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Items: 26

1.

Gingival Exudatome Dynamics Implicate Inhibition of the Alternative Complement Pathway in the Protective Action of the C3 Inhibitor Cp40 in Nonhuman Primate Periodontitis.

Bostanci N, Bao K, Li X, Maekawa T, Grossmann J, Panse C, Briones RA, Resuello RRG, Tuplano JV, Garcia CAG, Reis ES, Lambris JD, Hajishengallis G.

J Proteome Res. 2018 Sep 7;17(9):3153-3175. doi: 10.1021/acs.jproteome.8b00263. Epub 2018 Aug 29.

PMID:
30111112
2.

rawDiag: An R Package Supporting Rational LC-MS Method Optimization for Bottom-up Proteomics.

Trachsel C, Panse C, Kockmann T, Wolski WE, Grossmann J, Schlapbach R.

J Proteome Res. 2018 Aug 3;17(8):2908-2914. doi: 10.1021/acs.jproteome.8b00173. Epub 2018 Jul 24.

PMID:
29978702
3.

In search of cerebrospinal fluid biomarkers of fatigue in multiple sclerosis: A proteomics study.

Valko PO, Roschitzki B, Faigle W, Grossmann J, Panse C, Biro P, Dambach M, Spahn DR, Weller M, Martin R, Baumann CR.

J Sleep Res. 2018 Jul 1:e12721. doi: 10.1111/jsr.12721. [Epub ahead of print]

PMID:
29961995
4.

Native Chemical Ligation Directed by Photocleavable Peptide Nucleic Acid (PNA) Templates.

Middel S, Panse CH, Nawratil S, Diederichsen U.

Chembiochem. 2017 Dec 5;18(23):2328-2332. doi: 10.1002/cbic.201700487. Epub 2017 Nov 2.

PMID:
28987009
5.

Probing Human Telomeric DNA and RNA Topology and Ligand Binding in a Cellular Model by Using Responsive Fluorescent Nucleoside Probes.

Manna S, Panse CH, Sontakke VA, Sangamesh S, Srivatsan SG.

Chembiochem. 2017 Aug 17;18(16):1604-1615. doi: 10.1002/cbic.201700283. Epub 2017 Jul 10.

6.

Combining Higher-Energy Collision Dissociation and Electron-Transfer/Higher-Energy Collision Dissociation Fragmentation in a Product-Dependent Manner Confidently Assigns Proteomewide ADP-Ribose Acceptor Sites.

Bilan V, Leutert M, Nanni P, Panse C, Hottiger MO.

Anal Chem. 2017 Feb 7;89(3):1523-1530. doi: 10.1021/acs.analchem.6b03365. Epub 2017 Jan 13.

PMID:
28035797
7.

Targeted proteomics coming of age - SRM, PRM and DIA performance evaluated from a core facility perspective.

Kockmann T, Trachsel C, Panse C, Wahlander A, Selevsek N, Grossmann J, Wolski WE, Schlapbach R.

Proteomics. 2016 Aug;16(15-16):2183-92. doi: 10.1002/pmic.201500502. Epub 2016 Jun 8.

PMID:
27130639
8.

specL--an R/Bioconductor package to prepare peptide spectrum matches for use in targeted proteomics.

Panse C, Trachsel C, Grossmann J, Schlapbach R.

Bioinformatics. 2015 Jul 1;31(13):2228-31. doi: 10.1093/bioinformatics/btv105. Epub 2015 Feb 23.

PMID:
25712692
9.

PTM MarkerFinder, a software tool to detect and validate spectra from peptides carrying post-translational modifications.

Nanni P, Panse C, Gehrig P, Mueller S, Grossmann J, Schlapbach R.

Proteomics. 2013 Aug;13(15):2251-5. doi: 10.1002/pmic.201300036. Epub 2013 Jul 1.

PMID:
23713006
10.

FCC - An automated rule-based processing tool for life science data.

Barkow-Oesterreicher S, Türker C, Panse C.

Source Code Biol Med. 2013 Jan 11;8(1):3. doi: 10.1186/1751-0473-8-3.

11.

Coiled-coil formation on lipid bilayers--implications for docking and fusion efficiency.

Pähler G, Panse C, Diederichsen U, Janshoff A.

Biophys J. 2012 Dec 5;103(11):2295-303. doi: 10.1016/j.bpj.2012.08.053.

12.

Identification of combinatorial patterns of post-translational modifications on individual histones in the mouse brain.

Tweedie-Cullen RY, Brunner AM, Grossmann J, Mohanna S, Sichau D, Nanni P, Panse C, Mansuy IM.

PLoS One. 2012;7(5):e36980. doi: 10.1371/journal.pone.0036980. Epub 2012 May 31.

13.

PPINGUIN: Peptide Profiling Guided Identification of Proteins improves quantitation of iTRAQ ratios.

Bauer C, Kleinjung F, Rutishauser D, Panse C, Chadt A, Dreja T, Al-Hasani H, Reinert K, Schlapbach R, Schuchhardt J.

BMC Bioinformatics. 2012 Feb 16;13:34. doi: 10.1186/1471-2105-13-34.

14.

Unit cell structure of crystal polytypes in InAs and InSb nanowires.

Kriegner D, Panse C, Mandl B, Dick KA, Keplinger M, Persson JM, Caroff P, Ercolani D, Sorba L, Bechstedt F, Stangl J, Bauer G.

Nano Lett. 2011 Apr 13;11(4):1483-9. doi: 10.1021/nl1041512. Epub 2011 Mar 24.

PMID:
21434674
15.

Implementation and evaluation of relative and absolute quantification in shotgun proteomics with label-free methods.

Grossmann J, Roschitzki B, Panse C, Fortes C, Barkow-Oesterreicher S, Rutishauser D, Schlapbach R.

J Proteomics. 2010 Aug 5;73(9):1740-6. doi: 10.1016/j.jprot.2010.05.011. Epub 2010 May 31.

PMID:
20576481
16.

Influence of Strong Electron Correlation on Magnetism in Transition-Metal Doped Si Nanocrystals.

Leitsmann R, Küwen F, Rödl C, Panse C, Bechstedt F.

J Chem Theory Comput. 2010 Feb 9;6(2):353-8. doi: 10.1021/ct9003993.

PMID:
26617294
17.

PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells.

Bodenmiller B, Malmstrom J, Gerrits B, Campbell D, Lam H, Schmidt A, Rinner O, Mueller LN, Shannon PT, Pedrioli PG, Panse C, Lee HK, Schlapbach R, Aebersold R.

Mol Syst Biol. 2007;3:139. Epub 2007 Oct 16. Review.

18.

A high-quality catalog of the Drosophila melanogaster proteome.

Brunner E, Ahrens CH, Mohanty S, Baetschmann H, Loevenich S, Potthast F, Deutsch EW, Panse C, de Lichtenberg U, Rinner O, Lee H, Pedrioli PG, Malmstrom J, Koehler K, Schrimpf S, Krijgsveld J, Kregenow F, Heck AJ, Hafen E, Schlapbach R, Aebersold R.

Nat Biotechnol. 2007 May;25(5):576-83. Epub 2007 Apr 22.

PMID:
17450130
19.

Ultrahigh mass resolution and accurate mass measurements as a tool to characterize oligomers in secondary organic aerosols.

Reinhardt A, Emmenegger C, Gerrits B, Panse C, Dommen J, Baltensperger U, Zenobi R, Kalberer M.

Anal Chem. 2007 Jun 1;79(11):4074-82. Epub 2007 Apr 6.

PMID:
17411016
20.

Comparing the lipid membrane affinity and permeation of drug-like acids: the intriguing effects of cholesterol and charged lipids.

Thomae AV, Koch T, Panse C, Wunderli-Allenspach H, Krämer SD.

Pharm Res. 2007 Aug;24(8):1457-72. Epub 2007 Mar 27.

PMID:
17387599
21.

Qualitative and quantitative analyses of protein phosphorylation in naive and stimulated mouse synaptosomal preparations.

Munton RP, Tweedie-Cullen R, Livingstone-Zatchej M, Weinandy F, Waidelich M, Longo D, Gehrig P, Potthast F, Rutishauser D, Gerrits B, Panse C, Schlapbach R, Mansuy IM.

Mol Cell Proteomics. 2007 Feb;6(2):283-93. Epub 2006 Nov 17.

22.

Visualization of geo-spatial point sets via global shape transformation and local pixel placement.

Panse C, Sips M, Keim DA, North SC.

IEEE Trans Vis Comput Graph. 2006 Sep-Oct;12(5):749-56.

PMID:
17080796
23.

Medial-axis-based cartograms.

Keim DA, Panse C, North SC.

IEEE Comput Graph Appl. 2005 May-Jun;25(3):60-8. No abstract available.

PMID:
15943089
24.

Visual data mining in large geospatial point sets.

Keim DA, Panse C, Sips M, North SC.

IEEE Comput Graph Appl. 2004 Sep-Oct;24(5):36-44. No abstract available.

PMID:
15628099
25.

CartoDraw: a fast algorithm for generating contiguous cartograms.

Keim DA, North SC, Panse C.

IEEE Trans Vis Comput Graph. 2004 Jan-Feb;10(1):95-110.

PMID:
15382701
26.

The endotheliochorial interhemal membrane of the Indian musk shrew, Suncus murinus: an ultrastructural study.

Bhiwgade DA, Panse CS, Taskar S, Uthaman D, Bhatnagar KP.

Ital J Anat Embryol. 1998 Apr-Jun;103(2):83-93.

PMID:
9719774

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