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Items: 1 to 50 of 51

1.

Selective coordination of three transition metal ions within a coiled-coil peptide scaffold.

Boyle AL, Rabe M, Crone NSA, Rhys GG, Soler N, Voskamp P, Pannu NS, Kros A.

Chem Sci. 2019 Jun 20;10(31):7456-7465. doi: 10.1039/c9sc01165j. eCollection 2019 Aug 21.

2.

New Conformations of Acylation Adducts of Inhibitors of β-Lactamase from Mycobacterium tuberculosis.

Tassoni R, Blok A, Pannu NS, Ubbink M.

Biochemistry. 2019 Feb 19;58(7):997-1009. doi: 10.1021/acs.biochem.8b01085. Epub 2019 Jan 30.

3.

Ab initio structure determination of nanocrystals of organic pharmaceutical compounds by electron diffraction at room temperature using a Timepix quantum area direct electron detector. Corrigendum.

van Genderen E, Clabbers MTB, Das PP, Stewart A, Nederlof I, Barentsen KC, Portillo Q, Pannu NS, Nicolopoulos S, Gruene T, Abrahams JP.

Acta Crystallogr A Found Adv. 2018 Nov 1;74(Pt 6):709. doi: 10.1107/S2053273318014079. Epub 2018 Oct 30.

4.

Structure of ScpC, a virulence protease from Streptococcus pyogenes, reveals the functional domains and maturation mechanism.

Jobichen C, Tan YC, Prabhakar MT, Nayak D, Biswas D, Pannu NS, Hanski E, Sivaraman J.

Biochem J. 2018 Sep 11;475(17):2847-2860. doi: 10.1042/BCJ20180145.

PMID:
30049896
5.

A new MR-SAD algorithm for the automatic building of protein models from low-resolution X-ray data and a poor starting model.

Skubák P, Araç D, Bowler MW, Correia AR, Hoelz A, Larsen S, Leonard GA, McCarthy AA, McSweeney S, Mueller-Dieckmann C, Otten H, Salzman G, Pannu NS.

IUCrJ. 2018 Jan 25;5(Pt 2):166-171. doi: 10.1107/S2052252517017961. eCollection 2018 Mar 1.

6.

CCP4i2: the new graphical user interface to the CCP4 program suite.

Potterton L, Agirre J, Ballard C, Cowtan K, Dodson E, Evans PR, Jenkins HT, Keegan R, Krissinel E, Stevenson K, Lebedev A, McNicholas SJ, Nicholls RA, Noble M, Pannu NS, Roth C, Sheldrick G, Skubak P, Turkenburg J, Uski V, von Delft F, Waterman D, Wilson K, Winn M, Wojdyr M.

Acta Crystallogr D Struct Biol. 2018 Feb 1;74(Pt 2):68-84. doi: 10.1107/S2059798317016035. Epub 2018 Feb 1.

7.

TRiC controls transcription resumption after UV damage by regulating Cockayne syndrome protein A.

Pines A, Dijk M, Makowski M, Meulenbroek EM, Vrouwe MG, van der Weegen Y, Baltissen M, French PJ, van Royen ME, Luijsterburg MS, Mullenders LH, Vermeulen M, Vermeulen W, Pannu NS, van Attikum H.

Nat Commun. 2018 Mar 12;9(1):1040. doi: 10.1038/s41467-018-03484-6.

8.

Ankyrin repeats as a dimerization module.

Kozlov G, Wong K, Wang W, Skubák P, Muñoz-Escobar J, Liu Y, Siddiqui N, Pannu NS, Gehring K.

Biochem Biophys Res Commun. 2018 Jan 1;495(1):1002-1007. doi: 10.1016/j.bbrc.2017.11.135. Epub 2017 Nov 21.

PMID:
29175332
9.

Phosphate Promotes the Recovery of Mycobacterium tuberculosis β-Lactamase from Clavulanic Acid Inhibition.

Elings W, Tassoni R, van der Schoot SA, Luu W, Kynast JP, Dai L, Blok AJ, Timmer M, Florea BI, Pannu NS, Ubbink M.

Biochemistry. 2017 Nov 28;56(47):6257-6267. doi: 10.1021/acs.biochem.7b00556. Epub 2017 Nov 14.

10.

Single-particle cryo-EM using alignment by classification (ABC): the structure of Lumbricus terrestris haemoglobin.

Afanasyev P, Seer-Linnemayr C, Ravelli RBG, Matadeen R, De Carlo S, Alewijnse B, Portugal RV, Pannu NS, Schatz M, van Heel M.

IUCrJ. 2017 Aug 31;4(Pt 5):678-694. doi: 10.1107/S2052252517010922. eCollection 2017 Sep 1.

11.

The Effect of Language on Hospital Inpatient Length of Stay.

Pannu NS, Hill-Mann A, Gill G.

Healthc Q. 2017;20(1):73-78.

PMID:
28550705
12.

Structural and functional characterization of the alanine racemase from Streptomyces coelicolor A3(2).

Tassoni R, van der Aart LT, Ubbink M, van Wezel GP, Pannu NS.

Biochem Biophys Res Commun. 2017 Jan 29;483(1):122-128. doi: 10.1016/j.bbrc.2016.12.183. Epub 2016 Dec 29.

PMID:
28042035
13.

How Dextran Sulfate Affects C1-inhibitor Activity: A Model for Polysaccharide Potentiation.

Dijk M, Holkers J, Voskamp P, Giannetti BM, Waterreus WJ, van Veen HA, Pannu NS.

Structure. 2016 Dec 6;24(12):2182-2189. doi: 10.1016/j.str.2016.09.013. Epub 2016 Nov 3.

14.

Diverse architectural properties of Sso10a proteins: Evidence for a role in chromatin compaction and organization.

Driessen RP, Lin SN, Waterreus WJ, van der Meulen AL, van der Valk RA, Laurens N, Moolenaar GF, Pannu NS, Wuite GJ, Goosen N, Dame RT.

Sci Rep. 2016 Jul 11;6:29422. doi: 10.1038/srep29422.

15.

Ab initio structure determination of nanocrystals of organic pharmaceutical compounds by electron diffraction at room temperature using a Timepix quantum area direct electron detector.

van Genderen E, Clabbers MT, Das PP, Stewart A, Nederlof I, Barentsen KC, Portillo Q, Pannu NS, Nicolopoulos S, Gruene T, Abrahams JP.

Acta Crystallogr A Found Adv. 2016 Mar;72(Pt 2):236-42. doi: 10.1107/S2053273315022500. Epub 2016 Feb 5. Erratum in: Acta Crystallogr A Found Adv. 2018 Nov 1;74(Pt 6):709.

16.

Glucosylated cholesterol in mammalian cells and tissues: formation and degradation by multiple cellular β-glucosidases.

Marques AR, Mirzaian M, Akiyama H, Wisse P, Ferraz MJ, Gaspar P, Ghauharali-van der Vlugt K, Meijer R, Giraldo P, Alfonso P, Irún P, Dahl M, Karlsson S, Pavlova EV, Cox TM, Scheij S, Verhoek M, Ottenhoff R, van Roomen CP, Pannu NS, van Eijk M, Dekker N, Boot RG, Overkleeft HS, Blommaart E, Hirabayashi Y, Aerts JM.

J Lipid Res. 2016 Mar;57(3):451-63. doi: 10.1194/jlr.M064923. Epub 2016 Jan 2.

17.

Engineering specificity in a dynamic protein complex with a single conserved mutation.

Bashir Q, Meulenbroek EM, Pannu NS, Ubbink M.

FEBS J. 2014 Nov;281(21):4892-905. doi: 10.1111/febs.13028. Epub 2014 Sep 26.

18.

The dynamic complex of cytochrome c6 and cytochrome f studied with paramagnetic NMR spectroscopy.

Díaz-Moreno I, Hulsker R, Skubak P, Foerster JM, Cavazzini D, Finiguerra MG, Díaz-Quintana A, Moreno-Beltrán B, Rossi GL, Ullmann GM, Pannu NS, De la Rosa MA, Ubbink M.

Biochim Biophys Acta. 2014 Aug;1837(8):1305-15. doi: 10.1016/j.bbabio.2014.03.009. Epub 2014 Mar 28.

19.

X-ray refinement significantly underestimates the level of microscopic heterogeneity in biomolecular crystals.

Kuzmanic A, Pannu NS, Zagrovic B.

Nat Commun. 2014;5:3220. doi: 10.1038/ncomms4220.

20.

Automatic protein structure solution from weak X-ray data.

Skubák P, Pannu NS.

Nat Commun. 2013;4:2777. doi: 10.1038/ncomms3777.

21.

UV damage endonuclease employs a novel dual-dinucleotide flipping mechanism to recognize different DNA lesions.

Meulenbroek EM, Peron Cane C, Jala I, Iwai S, Moolenaar GF, Goosen N, Pannu NS.

Nucleic Acids Res. 2013 Jan;41(2):1363-71. doi: 10.1093/nar/gks1127. Epub 2012 Dec 4.

22.

Structure of a post-translationally processed heterodimeric double-headed Kunitz-type serine protease inhibitor from potato.

Meulenbroek EM, Thomassen EA, Pouvreau L, Abrahams JP, Gruppen H, Pannu NS.

Acta Crystallogr D Biol Crystallogr. 2012 Jul;68(Pt 7):794-9. doi: 10.1107/S090744491201222X. Epub 2012 Jun 15.

PMID:
22751664
23.

Overproduction, purification, crystallization and preliminary X-ray diffraction analysis of Cockayne syndrome protein A in complex with DNA damage-binding protein 1.

Meulenbroek EM, Pannu NS.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Jan 1;68(Pt 1):45-8. doi: 10.1107/S1744309111045842. Epub 2011 Dec 24.

24.

Dynamics may significantly influence the estimation of interatomic distances in biomolecular X-ray structures.

Kuzmanic A, Kruschel D, van Gunsteren WF, Pannu NS, Zagrovic B.

J Mol Biol. 2011 Aug 5;411(1):286-97. doi: 10.1016/j.jmb.2011.05.033. Epub 2011 May 30.

25.

REFMAC5 for the refinement of macromolecular crystal structures.

Murshudov GN, Skubák P, Lebedev AA, Pannu NS, Steiner RA, Nicholls RA, Winn MD, Long F, Vagin AA.

Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):355-67. doi: 10.1107/S0907444911001314. Epub 2011 Mar 18.

26.

Reduction of density-modification bias by β correction.

Skubák P, Pannu NS.

Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):345-54. doi: 10.1107/S0907444911002083. Epub 2011 Mar 18.

27.

Recent advances in the CRANK software suite for experimental phasing.

Pannu NS, Waterreus WJ, Skubák P, Sikharulidze I, Abrahams JP, de Graaff RA.

Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):331-7. doi: 10.1107/S0907444910052224. Epub 2011 Mar 18.

28.

Overview of the CCP4 suite and current developments.

Winn MD, Ballard CC, Cowtan KD, Dodson EJ, Emsley P, Evans PR, Keegan RM, Krissinel EB, Leslie AG, McCoy A, McNicholas SJ, Murshudov GN, Pannu NS, Potterton EA, Powell HR, Read RJ, Vagin A, Wilson KS.

Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):235-42. doi: 10.1107/S0907444910045749. Epub 2011 Mar 18.

29.

Multivariate phase combination improves automated crystallographic model building.

Skubák P, Waterreus WJ, Pannu NS.

Acta Crystallogr D Biol Crystallogr. 2010 Jul;66(Pt 7):783-8. doi: 10.1107/S0907444910014642. Epub 2010 Jun 19.

PMID:
20606258
30.

A multivariate likelihood SIRAS function for phasing and model refinement.

Skubák P, Murshudov G, Pannu NS.

Acta Crystallogr D Biol Crystallogr. 2009 Oct;65(Pt 10):1051-61. doi: 10.1107/S0907444909028078. Epub 2009 Sep 16.

31.

The Max-Inf2/Lorentz Center workshop on New algorithms in macromolecular crystallography and electron microscopy.

Pannu NS, Ravelli RB, Abrahams JP.

Acta Crystallogr D Biol Crystallogr. 2009 Jul;65(Pt 7):623-4. doi: 10.1107/S0907444909020861. Epub 2009 Jun 20.

32.

Crystal structure of chlorite dismutase, a detoxifying enzyme producing molecular oxygen.

de Geus DC, Thomassen EA, Hagedoorn PL, Pannu NS, van Duijn E, Abrahams JP.

J Mol Biol. 2009 Mar 20;387(1):192-206. doi: 10.1016/j.jmb.2009.01.036. Epub 2009 Jan 27.

PMID:
19361444
33.

Involvement of a carboxylated lysine in UV damage endonuclease.

Meulenbroek EM, Paspaleva K, Thomassen EA, Abrahams JP, Goosen N, Pannu NS.

Protein Sci. 2009 Mar;18(3):549-58. doi: 10.1002/pro.54.

34.

Crystal structure of the DNA repair enzyme ultraviolet damage endonuclease.

Paspaleva K, Thomassen E, Pannu NS, Iwai S, Moolenaar GF, Goosen N, Abrahams JP.

Structure. 2007 Oct;15(10):1316-24.

35.

Extending the resolution and phase-quality limits in automated model building with iterative refinement.

Skubák P, Ness S, Pannu NS.

Acta Crystallogr D Biol Crystallogr. 2005 Dec;61(Pt 12):1626-35. Epub 2005 Nov 19.

PMID:
16301796
36.

Direct incorporation of experimental phase information in model refinement.

Skubák P, Murshudov GN, Pannu NS.

Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2196-201. Epub 2004 Nov 26.

PMID:
15572772
37.

CRANK: new methods for automated macromolecular crystal structure solution.

Ness SR, de Graaff RA, Abrahams JP, Pannu NS.

Structure. 2004 Oct;12(10):1753-61.

38.

Crystal structure of an empty capsid of turnip yellow mosaic virus.

van Roon AM, Bink HH, Plaisier JR, Pleij CW, Abrahams JP, Pannu NS.

J Mol Biol. 2004 Aug 27;341(5):1205-14.

PMID:
15321716
39.

Structure of an anti-Lewis X Fab fragment in complex with its Lewis X antigen.

van Roon AM, Pannu NS, de Vrind JP, van der Marel GA, van Boom JH, Hokke CH, Deelder AM, Abrahams JP.

Structure. 2004 Jul;12(7):1227-36.

40.

The application of multivariate statistical techniques improves single-wavelength anomalous diffraction phasing.

Pannu NS, Read RJ.

Acta Crystallogr D Biol Crystallogr. 2004 Jan;60(Pt 1):22-7. Epub 2003 Dec 18.

PMID:
14684888
41.

Application of the complex multivariate normal distribution to crystallographic methods with insights into multiple isomorphous replacement phasing.

Pannu NS, McCoy AJ, Read RJ.

Acta Crystallogr D Biol Crystallogr. 2003 Oct;59(Pt 10):1801-8. Epub 2003 Sep 19.

PMID:
14501121
42.

Crystallization and preliminary X-ray analysis of an anti-LewisX Fab fragment with and without its LewisX antigen.

van Roon AM, Pannu NS, Hokke CH, Deelder AM, Abrahams JP.

Acta Crystallogr D Biol Crystallogr. 2003 Jul;59(Pt 7):1306-9. Epub 2003 Jun 27.

PMID:
12832795
43.

How vitronectin binds PAI-1 to modulate fibrinolysis and cell migration.

Zhou A, Huntington JA, Pannu NS, Carrell RW, Read RJ.

Nat Struct Biol. 2003 Jul;10(7):541-4.

PMID:
12808446
44.

A mutant Shiga-like toxin IIe bound to its receptor Gb(3): structure of a group II Shiga-like toxin with altered binding specificity.

Ling H, Pannu NS, Boodhoo A, Armstrong GD, Clark CG, Brunton JL, Read RJ.

Structure. 2000 Mar 15;8(3):253-64.

45.

Shiga-like toxins are neutralized by tailored multivalent carbohydrate ligands.

Kitov PI, Sadowska JM, Mulvey G, Armstrong GD, Ling H, Pannu NS, Read RJ, Bundle DR.

Nature. 2000 Feb 10;403(6770):669-72.

PMID:
10688205
46.

A 2.6 A structure of a serpin polymer and implications for conformational disease.

Huntington JA, Pannu NS, Hazes B, Read RJ, Lomas DA, Carrell RW.

J Mol Biol. 1999 Oct 29;293(3):449-55.

PMID:
10543942
47.

The active conformation of plasminogen activator inhibitor 1, a target for drugs to control fibrinolysis and cell adhesion.

Sharp AM, Stein PE, Pannu NS, Carrell RW, Berkenpas MB, Ginsburg D, Lawrence DA, Read RJ.

Structure. 1999 Feb 15;7(2):111-8.

48.

Incorporation of prior phase information strengthens maximum-likelihood structure refinement.

Pannu NS, Murshudov GN, Dodson EJ, Read RJ.

Acta Crystallogr D Biol Crystallogr. 1998 Nov 1;54(Pt 6 Pt 2):1285-94.

PMID:
10089505
49.

Extending the limits of molecular replacement through combined simulated annealing and maximum-likelihood refinement.

Adams PD, Pannu NS, Read RJ, Brunger AT.

Acta Crystallogr D Biol Crystallogr. 1999 Jan;55(Pt 1):181-90. Epub 1999 Jan 1.

PMID:
10089409
50.

Crystallography & NMR system: A new software suite for macromolecular structure determination.

Brünger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL.

Acta Crystallogr D Biol Crystallogr. 1998 Sep 1;54(Pt 5):905-21.

PMID:
9757107

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