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Items: 19


Symbiotic organs shaped by distinct modes of genome evolution in cephalopods.

Belcaid M, Casaburi G, McAnulty SJ, Schmidbaur H, Suria AM, Moriano-Gutierrez S, Pankey MS, Oakley TH, Kremer N, Koch EJ, Collins AJ, Nguyen H, Lek S, Goncharenko-Foster I, Minx P, Sodergren E, Weinstock G, Rokhsar DS, McFall-Ngai M, Simakov O, Foster JS, Nyholm SV.

Proc Natl Acad Sci U S A. 2019 Feb 19;116(8):3030-3035. doi: 10.1073/pnas.1817322116. Epub 2019 Jan 11.


Sequences of Circadian Clock Proteins in the Nudibranch Molluscs Hermissenda crassicornis, Melibe leonina, and Tritonia diomedea.

Cook GM, Gruen AE, Morris J, Pankey MS, Senatore A, Katz PS, Watson WH 3rd, Newcomb JM.

Biol Bull. 2018 Jun;234(3):207-218. doi: 10.1086/698467. Epub 2018 Jun 5.


A member of the Roseobacter clade, Octadecabacter sp., is the dominant symbiont in the brittle star Amphipholis squamata.

Morrow KM, Tedford AR, Pankey MS, Lesser MP.

FEMS Microbiol Ecol. 2018 Apr 1;94(4). doi: 10.1093/femsec/fiy030.


Comparative Genomics of Color Morphs In the Coral Montastraea cavernosa.

Jarett JK, MacManes MD, Morrow KM, Pankey MS, Lesser MP.

Sci Rep. 2017 Nov 22;7(1):16039. doi: 10.1038/s41598-017-16371-9.


Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution.

Tanner AR, Fuchs D, Winkelmann IE, Gilbert MT, Pankey MS, Ribeiro ÂM, Kocot KM, Halanych KM, Oakley TH, da Fonseca RR, Pisani D, Vinther J.

Proc Biol Sci. 2017 Mar 15;284(1850). pii: 20162818. doi: 10.1098/rspb.2016.2818.


The Last Common Ancestor of Most Bilaterian Animals Possessed at Least Nine Opsins.

Ramirez MD, Pairett AN, Pankey MS, Serb JM, Speiser DI, Swafford AJ, Oakley TH.

Genome Biol Evol. 2016 Dec 1;8(12):3640-3652. doi: 10.1093/gbe/evw248.


Cheaters must prosper: reconciling theoretical and empirical perspectives on cheating in mutualism.

Jones EI, Afkhami ME, Akçay E, Bronstein JL, Bshary R, Frederickson ME, Heath KD, Hoeksema JD, Ness JH, Pankey MS, Porter SS, Sachs JL, Scharnagl K, Friesen ML.

Ecol Lett. 2015 Nov;18(11):1270-1284. doi: 10.1111/ele.12507. Epub 2015 Sep 21. Review.


Evolutionary relatedness does not predict competition and co-occurrence in natural or experimental communities of green algae.

Alexandrou MA, Cardinale BJ, Hall JD, Delwiche CF, Fritschie K, Narwani A, Venail PA, Bentlage B, Pankey MS, Oakley TH.

Proc Biol Sci. 2015 Jan 22;282(1799):20141745. doi: 10.1098/rspb.2014.1745.


Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.

Speiser DI, Pankey MS, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR, Patel NH, Porter ML, Protas ME, Rivera AS, Serb JM, Zigler KS, Crandall KA, Oakley TH.

BMC Bioinformatics. 2014 Nov 19;15:350. doi: 10.1186/s12859-014-0350-x.


Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid.

Pankey MS, Minin VN, Imholte GC, Suchard MA, Oakley TH.

Proc Natl Acad Sci U S A. 2014 Nov 4;111(44):E4736-42. doi: 10.1073/pnas.1416574111. Epub 2014 Oct 21.


Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system.

Oakley TH, Alexandrou MA, Ngo R, Pankey MS, Churchill CK, Chen W, Lopker KB.

BMC Bioinformatics. 2014 Jul 2;15:230. doi: 10.1186/1471-2105-15-230.


Eye-specification genes in the bacterial light organ of the bobtail squid Euprymna scolopes, and their expression in response to symbiont cues.

Peyer SM, Pankey MS, Oakley TH, McFall-Ngai MJ.

Mech Dev. 2014 Feb;131:111-26. doi: 10.1016/j.mod.2013.09.004. Epub 2013 Oct 21.


Understanding the dermal light sense in the context of integrative photoreceptor cell biology.

Ramirez MD, Speiser DI, Pankey MS, Oakley TH.

Vis Neurosci. 2011 Jul;28(4):265-79. doi: 10.1017/S0952523811000150. Epub 2011 Jul 8. Review.


Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach.

Rivera AS, Pankey MS, Plachetzki DC, Villacorta C, Syme AE, Serb JM, Omilian AR, Oakley TH.

BMC Evol Biol. 2010 Apr 30;10:123. doi: 10.1186/1471-2148-10-123.


A "shallow phylogeny" of shallow barnacles (chthamalus).

Wares JP, Pankey MS, Pitombo F, Daglio LG, Achituv Y.

PLoS One. 2009;4(5):e5567. doi: 10.1371/journal.pone.0005567. Epub 2009 May 15.


Overdominant maintenance of diversity in the sea star Pisaster ochraceus.

Pankey MS, Wares JP.

J Evol Biol. 2009 Jan;22(1):80-7. doi: 10.1111/j.1420-9101.2008.01623.x.


Color polymorphism and genetic structure in the sea star Pisaster ochraceus.

Harley CD, Pankey MS, Wares JP, Grosberg RK, Wonham MJ.

Biol Bull. 2006 Dec;211(3):248-62.


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