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Items: 30

1.

A Guide to Regulation of the Formation of Biomolecular Condensates.

Bratek-Skicki A, Pancsa R, Meszaros B, Van Lindt J, Tompa P.

FEBS J. 2020 Feb 20. doi: 10.1111/febs.15254. [Epub ahead of print] Review.

PMID:
32080961
2.

An intrinsically disordered proteins community for ELIXIR.

Davey NE, Babu MM, Blackledge M, Bridge A, Capella-Gutierrez S, Dosztanyi Z, Drysdale R, Edwards RJ, Elofsson A, Felli IC, Gibson TJ, Gutmanas A, Hancock JM, Harrow J, Higgins D, Jeffries CM, Le Mercier P, Mészáros B, Necci M, Notredame C, Orchard S, Ouzounis CA, Pancsa R, Papaleo E, Pierattelli R, Piovesan D, Promponas VJ, Ruch P, Rustici G, Romero P, Sarntivijai S, Saunders G, Schuler B, Sharan M, Shields DC, Sussman JL, Tedds JA, Tompa P, Turewicz M, Vondrasek J, Vranken WF, Wallace BA, Wichapong K, Tosatto SCE.

F1000Res. 2019 Oct 15;8. pii: ELIXIR-1753. doi: 10.12688/f1000research.20136.1. eCollection 2019.

3.

DisProt: intrinsic protein disorder annotation in 2020.

Hatos A, Hajdu-Soltész B, Monzon AM, Palopoli N, Álvarez L, Aykac-Fas B, Bassot C, Benítez GI, Bevilacqua M, Chasapi A, Chemes L, Davey NE, Davidović R, Dunker AK, Elofsson A, Gobeill J, Foutel NSG, Sudha G, Guharoy M, Horvath T, Iglesias V, Kajava AV, Kovacs OP, Lamb J, Lambrughi M, Lazar T, Leclercq JY, Leonardi E, Macedo-Ribeiro S, Macossay-Castillo M, Maiani E, Manso JA, Marino-Buslje C, Martínez-Pérez E, Mészáros B, Mičetić I, Minervini G, Murvai N, Necci M, Ouzounis CA, Pajkos M, Paladin L, Pancsa R, Papaleo E, Parisi G, Pasche E, Barbosa Pereira PJ, Promponas VJ, Pujols J, Quaglia F, Ruch P, Salvatore M, Schad E, Szabo B, Szaniszló T, Tamana S, Tantos A, Veljkovic N, Ventura S, Vranken W, Dosztányi Z, Tompa P, Tosatto SCE, Piovesan D.

Nucleic Acids Res. 2020 Jan 8;48(D1):D269-D276. doi: 10.1093/nar/gkz975.

PMID:
31713636
4.

ELM-the eukaryotic linear motif resource in 2020.

Kumar M, Gouw M, Michael S, Sámano-Sánchez H, Pancsa R, Glavina J, Diakogianni A, Valverde JA, Bukirova D, Čalyševa J, Palopoli N, Davey NE, Chemes LB, Gibson TJ.

Nucleic Acids Res. 2020 Jan 8;48(D1):D296-D306. doi: 10.1093/nar/gkz1030.

PMID:
31680160
5.

Disorder-to-order transition in PE-PPE proteins of Mycobacterium tuberculosis augments the pro-pathogen immune response.

Ahmad J, Khubaib M, Sheikh JA, Pancsa R, Kumar S, Srinivasan A, Babu MM, Hasnain SE, Ehtesham NZ.

FEBS Open Bio. 2020 Jan;10(1):70-85. doi: 10.1002/2211-5463.12749. Epub 2019 Dec 17.

6.

PhaSePro: the database of proteins driving liquid-liquid phase separation.

Mészáros B, Erdős G, Szabó B, Schád É, Tantos Á, Abukhairan R, Horváth T, Murvai N, Kovács OP, Kovács M, Tosatto SCE, Tompa P, Dosztányi Z, Pancsa R.

Nucleic Acids Res. 2020 Jan 8;48(D1):D360-D367. doi: 10.1093/nar/gkz848.

PMID:
31612960
7.

Author Correction: Exploring the Sequence-based Prediction of Folding Initiation Sites in Proteins.

Raimondi D, Orlando G, Pancsa R, Khan T, Vranken WF.

Sci Rep. 2019 Aug 15;9(1):12140. doi: 10.1038/s41598-019-48219-9.

8.

Emergent functions of proteins in non-stoichiometric supramolecular assemblies.

Pancsa R, Schad E, Tantos A, Tompa P.

Biochim Biophys Acta Proteins Proteom. 2019 Oct;1867(10):970-979. doi: 10.1016/j.bbapap.2019.02.007. Epub 2019 Feb 28. Review.

PMID:
30826453
9.

Misprediction of Structural Disorder in Halophiles.

Pancsa R, Kovacs D, Tompa P.

Molecules. 2019 Jan 29;24(3). pii: E479. doi: 10.3390/molecules24030479.

10.

Co-Evolution of Intrinsically Disordered Proteins with Folded Partners Witnessed by Evolutionary Couplings.

Pancsa R, Zsolyomi F, Tompa P.

Int J Mol Sci. 2018 Oct 25;19(11). pii: E3315. doi: 10.3390/ijms19113315.

11.

MERIT: Systematic Analysis and Characterization of Mutational Effect on RNA Interactome Topology.

Li Y, McGrail DJ, Xu J, Li J, Liu NN, Sun M, Lin R, Pancsa R, Zhang J, Lee JS, Wang H, Mills GB, Li X, Yi S, Sahni N.

Hepatology. 2019 Aug;70(2):532-546. doi: 10.1002/hep.30242. Epub 2019 Jan 19.

12.

Function and Regulation of Phase-Separated Biological Condensates.

Li XH, Chavali PL, Pancsa R, Chavali S, Babu MM.

Biochemistry. 2018 May 1;57(17):2452-2461. doi: 10.1021/acs.biochem.7b01228. Epub 2018 Feb 12.

PMID:
29392932
13.

DIBS: a repository of disordered binding sites mediating interactions with ordered proteins.

Schad E, Fichó E, Pancsa R, Simon I, Dosztányi Z, Mészáros B.

Bioinformatics. 2018 Feb 1;34(3):535-537. doi: 10.1093/bioinformatics/btx640.

14.

Contrasting Function of Structured N-Terminal and Unstructured C-Terminal Segments of Mycobacterium tuberculosis PPE37 Protein.

Ahmad J, Farhana A, Pancsa R, Arora SK, Srinivasan A, Tyagi AK, Babu MM, Ehtesham NZ, Hasnain SE.

mBio. 2018 Jan 23;9(1). pii: e01712-17. doi: 10.1128/mBio.01712-17.

15.

Revealing the Determinants of Widespread Alternative Splicing Perturbation in Cancer.

Li Y, Sahni N, Pancsa R, McGrail DJ, Xu J, Hua X, Coulombe-Huntington J, Ryan M, Tychhon B, Sudhakar D, Hu L, Tyers M, Jiang X, Lin SY, Babu MM, Yi S.

Cell Rep. 2017 Oct 17;21(3):798-812. doi: 10.1016/j.celrep.2017.09.071.

16.

AmyPro: a database of proteins with validated amyloidogenic regions.

Varadi M, De Baets G, Vranken WF, Tompa P, Pancsa R.

Nucleic Acids Res. 2018 Jan 4;46(D1):D387-D392. doi: 10.1093/nar/gkx950.

17.

Exploring the Sequence-based Prediction of Folding Initiation Sites in Proteins.

Raimondi D, Orlando G, Pancsa R, Khan T, Vranken WF.

Sci Rep. 2017 Aug 18;7(1):8826. doi: 10.1038/s41598-017-08366-3. Erratum in: Sci Rep. 2019 Aug 15;9(1):12140.

18.

Coding Regions of Intrinsic Disorder Accommodate Parallel Functions.

Pancsa R, Tompa P.

Trends Biochem Sci. 2016 Nov;41(11):898-906. doi: 10.1016/j.tibs.2016.08.009. Epub 2016 Sep 16. Review.

PMID:
27647212
19.

Essential functions linked with structural disorder in organisms of minimal genome.

Pancsa R, Tompa P.

Biol Direct. 2016 Sep 8;11:45. doi: 10.1186/s13062-016-0149-y.

20.

Computational analysis of translational readthrough proteins in Drosophila and yeast reveals parallels to alternative splicing.

Pancsa R, Macossay-Castillo M, Kosol S, Tompa P.

Sci Rep. 2016 Aug 26;6:32142. doi: 10.1038/srep32142.

21.

Early Folding Events, Local Interactions, and Conservation of Protein Backbone Rigidity.

Pancsa R, Raimondi D, Cilia E, Vranken WF.

Biophys J. 2016 Feb 2;110(3):572-583. doi: 10.1016/j.bpj.2015.12.028.

22.

Start2Fold: a database of hydrogen/deuterium exchange data on protein folding and stability.

Pancsa R, Varadi M, Tompa P, Vranken WF.

Nucleic Acids Res. 2016 Jan 4;44(D1):D429-34. doi: 10.1093/nar/gkv1185. Epub 2015 Nov 17.

23.

Synonymous constraint elements show a tendency to encode intrinsically disordered protein segments.

Macossay-Castillo M, Kosol S, Tompa P, Pancsa R.

PLoS Comput Biol. 2014 May 8;10(5):e1003607. doi: 10.1371/journal.pcbi.1003607. eCollection 2014 May.

24.

The DynaMine webserver: predicting protein dynamics from sequence.

Cilia E, Pancsa R, Tompa P, Lenaerts T, Vranken WF.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W264-70. doi: 10.1093/nar/gku270. Epub 2014 Apr 11.

25.

From protein sequence to dynamics and disorder with DynaMine.

Cilia E, Pancsa R, Tompa P, Lenaerts T, Vranken WF.

Nat Commun. 2013;4:2741. doi: 10.1038/ncomms3741.

PMID:
24225580
26.

Structural disorder provides increased adaptability for vesicle trafficking pathways.

Pietrosemoli N, Pancsa R, Tompa P.

PLoS Comput Biol. 2013;9(7):e1003144. doi: 10.1371/journal.pcbi.1003144. Epub 2013 Jul 18.

27.

Functional diversity and structural disorder in the human ubiquitination pathway.

Bhowmick P, Pancsa R, Guharoy M, Tompa P.

PLoS One. 2013 May 29;8(5):e65443. doi: 10.1371/journal.pone.0065443. Print 2013.

28.

Intrinsically disordered proteins undergo and assist folding transitions in the proteome.

Kovacs D, Szabo B, Pancsa R, Tompa P.

Arch Biochem Biophys. 2013 Mar;531(1-2):80-9. doi: 10.1016/j.abb.2012.09.010. Epub 2012 Nov 7. Review.

PMID:
23142500
29.

Interactions via intrinsically disordered regions: what kind of motifs?

Pancsa R, Fuxreiter M.

IUBMB Life. 2012 Jun;64(6):513-20. doi: 10.1002/iub.1034. Epub 2012 Apr 25. Review.

30.

Structural disorder in eukaryotes.

Pancsa R, Tompa P.

PLoS One. 2012;7(4):e34687. doi: 10.1371/journal.pone.0034687. Epub 2012 Apr 5.

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