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Items: 10

1.

Regulatory Divergence in Wound-Responsive Gene Expression between Domesticated and Wild Tomato.

Liu MJ, Sugimoto K, Uygun S, Panchy N, Campbell MS, Yandell M, Howe GA, Shiu SH.

Plant Cell. 2018 May 9. pii: tpc.00194.2018. doi: 10.1105/tpc.18.00194. [Epub ahead of print]

2.

A Model-Based Approach for Identifying Functional Intergenic Transcribed Regions and Noncoding RNAs.

Lloyd JP, Tsai ZT, Sowers RP, Panchy NL, Shiu SH.

Mol Biol Evol. 2018 Jun 1;35(6):1422-1436. doi: 10.1093/molbev/msy035.

PMID:
29554332
3.

Diversity, expansion, and evolutionary novelty of plant DNA-binding transcription factor families.

Lehti-Shiu MD, Panchy N, Wang P, Uygun S, Shiu SH.

Biochim Biophys Acta. 2017 Jan;1860(1):3-20. doi: 10.1016/j.bbagrm.2016.08.005. Epub 2016 Aug 10. Review.

PMID:
27522016
4.

Evolution of Gene Duplication in Plants.

Panchy N, Lehti-Shiu M, Shiu SH.

Plant Physiol. 2016 Aug;171(4):2294-316. doi: 10.1104/pp.16.00523. Epub 2016 Jun 10. Review.

5.

Transcriptional coordination of physiological responses in Nannochloropsis oceanica CCMP1779 under light/dark cycles.

Poliner E, Panchy N, Newton L, Wu G, Lapinsky A, Bullard B, Zienkiewicz A, Benning C, Shiu SH, Farré EM.

Plant J. 2015 Sep;83(6):1097-113. doi: 10.1111/tpj.12944. Epub 2015 Aug 20.

6.

Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana.

Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH.

Plant Physiol. 2015 Aug;168(4):1717-34. doi: 10.1104/pp.15.00689. Epub 2015 Jun 23.

7.

Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes.

Law M, Childs KL, Campbell MS, Stein JC, Olson AJ, Holt C, Panchy N, Lei J, Jiao D, Andorf CM, Lawrence CJ, Ware D, Shiu SH, Sun Y, Jiang N, Yandell M.

Plant Physiol. 2015 Jan;167(1):25-39. doi: 10.1104/pp.114.245027. Epub 2014 Nov 10.

8.

Prevalence, evolution, and cis-regulation of diel transcription in Chlamydomonas reinhardtii.

Panchy N, Wu G, Newton L, Tsai CH, Chen J, Benning C, Farré EM, Shiu SH.

G3 (Bethesda). 2014 Oct 28;4(12):2461-71. doi: 10.1534/g3.114.015032.

9.

Changes in the daily rhythm of lipid metabolism in the diabetic retina.

Wang Q, Tikhonenko M, Bozack SN, Lydic TA, Yan L, Panchy NL, McSorley KM, Faber MS, Yan Y, Boulton ME, Grant MB, Busik JV.

PLoS One. 2014 Apr 15;9(4):e95028. doi: 10.1371/journal.pone.0095028. eCollection 2014.

10.

Inferring the regulatory interaction models of transcription factors in transcriptional regulatory networks.

Awad S, Panchy N, Ng SK, Chen J.

J Bioinform Comput Biol. 2012 Oct;10(5):1250012. doi: 10.1142/S0219720012500126. Epub 2012 Jun 26.

PMID:
22849367

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