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Items: 1 to 50 of 139

1.

Genomic models predict successful coral adaptation if future ocean warming rates are reduced.

Bay RA, Rose NH, Logan CA, Palumbi SR.

Sci Adv. 2017 Nov 1;3(11):e1701413. doi: 10.1126/sciadv.1701413. eCollection 2017 Nov.

2.

Polygenic evolution drives species divergence and climate adaptation in corals.

Rose NH, Bay RA, Morikawa MK, Palumbi SR.

Evolution. 2018 Jan;72(1):82-94. doi: 10.1111/evo.13385. Epub 2017 Nov 24.

PMID:
29098686
3.

The genomics of recovery from coral bleaching.

Thomas L, Palumbi SR.

Proc Biol Sci. 2017 Oct 25;284(1865). pii: 20171790. doi: 10.1098/rspb.2017.1790.

PMID:
29070726
4.

Calcifying algae maintain settlement cues to larval abalone following algal exposure to extreme ocean acidification.

O'Leary JK, Barry JP, Gabrielson PW, Rogers-Bennett L, Potts DC, Palumbi SR, Micheli F.

Sci Rep. 2017 Jul 18;7(1):5774. doi: 10.1038/s41598-017-05502-x.

5.

Transcriptome predictors of coral survival and growth in a highly variable environment.

Bay RA, Palumbi SR.

Ecol Evol. 2017 May 25;7(13):4794-4803. doi: 10.1002/ece3.2685. eCollection 2017 Jul.

6.

Early Transcriptional Responses during Heat Stress in the Coral Acropora hyacinthus.

Traylor-Knowles N, Rose NH, Sheets EA, Palumbi SR.

Biol Bull. 2017 Apr;232(2):91-100. doi: 10.1086/692717. Epub 2017 May 31.

PMID:
28654330
7.

Robert Treat Paine III (1933-2016).

Palumbi SR, Estes JA, Kareiva P, Levin SA, Lubchenco J, Power ME.

Proc Natl Acad Sci U S A. 2017 Jul 3;114(27):6881-6882. doi: 10.1073/pnas.1706692114. Epub 2017 Jun 19. No abstract available.

8.

Coral reefs in the Anthropocene.

Hughes TP, Barnes ML, Bellwood DR, Cinner JE, Cumming GS, Jackson JBC, Kleypas J, van de Leemput IA, Lough JM, Morrison TH, Palumbi SR, van Nes EH, Scheffer M.

Nature. 2017 May 31;546(7656):82-90. doi: 10.1038/nature22901. Review.

PMID:
28569801
9.

Predicting Responses to Contemporary Environmental Change Using Evolutionary Response Architectures.

Bay RA, Rose N, Barrett R, Bernatchez L, Ghalambor CK, Lasky JR, Brem RB, Palumbi SR, Ralph P.

Am Nat. 2017 May;189(5):463-473. doi: 10.1086/691233. Epub 2017 Mar 17. Review.

PMID:
28410032
10.

Highly localized divergence within supergenes in Atlantic cod (Gadus morhua) within the Gulf of Maine.

Barney BT, Munkholm C, Walt DR, Palumbi SR.

BMC Genomics. 2017 Mar 31;18(1):271. doi: 10.1186/s12864-017-3660-3.

11.

Tidal heat pulses on a reef trigger a fine-tuned transcriptional response in corals to maintain homeostasis.

Ruiz-Jones LJ, Palumbi SR.

Sci Adv. 2017 Mar 8;3(3):e1601298. doi: 10.1126/sciadv.1601298. eCollection 2017 Mar.

12.

The cell specificity of gene expression in the response to heat stress in corals.

Traylor-Knowles N, Rose NH, Palumbi SR.

J Exp Biol. 2017 May 15;220(Pt 10):1837-1845. doi: 10.1242/jeb.155275. Epub 2017 Mar 2.

13.

Bacterial community dynamics are linked to patterns of coral heat tolerance.

Ziegler M, Seneca FO, Yum LK, Palumbi SR, Voolstra CR.

Nat Commun. 2017 Feb 10;8:14213. doi: 10.1038/ncomms14213.

14.

Transcriptomic responses to seawater acidification among sea urchin populations inhabiting a natural pH mosaic.

Evans TG, Pespeni MH, Hofmann GE, Palumbi SR, Sanford E.

Mol Ecol. 2017 Apr;26(8):2257-2275. doi: 10.1111/mec.14038. Epub 2017 Mar 8.

PMID:
28141889
15.

A keystone ecologist: Robert Treat Paine, 1933-2016.

Estes JA, Dayton PK, Kareiva P, Levin SA, Lubchenco J, Menge BA, Palumbi SR, Power ME, Terborgh J.

Ecology. 2016 Nov;97(11):2905-2909. doi: 10.1002/ecy.1572.

PMID:
27870047
16.

Practical low-coverage genomewide sequencing of hundreds of individually barcoded samples for population and evolutionary genomics in nonmodel species.

Therkildsen NO, Palumbi SR.

Mol Ecol Resour. 2017 Mar;17(2):194-208. doi: 10.1111/1755-0998.12593. Epub 2016 Aug 29.

PMID:
27496322
17.

Gene Networks in the Wild: Identifying Transcriptional Modules that Mediate Coral Resistance to Experimental Heat Stress.

Rose NH, Seneca FO, Palumbi SR.

Genome Biol Evol. 2015 Dec 28;8(1):243-52. doi: 10.1093/gbe/evv258.

18.

Transcriptome-wide Changes in Coral Gene Expression at Noon and Midnight Under Field Conditions.

Ruiz-Jones LJ, Palumbi SR.

Biol Bull. 2015 Jun;228(3):227-41.

PMID:
26124449
19.

Transcriptome sequencing reveals both neutral and adaptive genome dynamics in a marine invader.

Tepolt CK, Palumbi SR.

Mol Ecol. 2015 Aug;24(16):4145-58. doi: 10.1111/mec.13294. Epub 2015 Jul 27.

PMID:
26118396
20.

Marine biology. Uncovering hidden worlds of ocean biodiversity.

Armbrust EV, Palumbi SR.

Science. 2015 May 22;348(6237):865-7. doi: 10.1126/science.aaa7378. No abstract available.

PMID:
25999494
21.

Rapid Acclimation Ability Mediated by Transcriptome Changes in Reef-Building Corals.

Bay RA, Palumbi SR.

Genome Biol Evol. 2015 May 15;7(6):1602-12. doi: 10.1093/gbe/evv085.

22.

SNP genotyping and population genomics from expressed sequences - current advances and future possibilities.

De Wit P, Pespeni MH, Palumbi SR.

Mol Ecol. 2015 May;24(10):2310-23. doi: 10.1111/mec.13165. Epub 2015 Apr 20. Review.

PMID:
25808983
23.

Ocean acidification research in the 'post-genomic' era: Roadmaps from the purple sea urchin Strongylocentrotus purpuratus.

Evans TG, Padilla-Gamiño JL, Kelly MW, Pespeni MH, Chan F, Menge BA, Gaylord B, Hill TM, Russell AD, Palumbi SR, Sanford E, Hofmann GE.

Comp Biochem Physiol A Mol Integr Physiol. 2015 Jul;185:33-42. doi: 10.1016/j.cbpa.2015.03.007. Epub 2015 Mar 13. Review.

PMID:
25773301
24.

The role of transcriptome resilience in resistance of corals to bleaching.

Seneca FO, Palumbi SR.

Mol Ecol. 2015 Apr;24(7):1467-84. doi: 10.1111/mec.13125. Epub 2015 Mar 20.

PMID:
25728233
25.

Marine defaunation: animal loss in the global ocean.

McCauley DJ, Pinsky ML, Palumbi SR, Estes JA, Joyce FH, Warner RR.

Science. 2015 Jan 16;347(6219):1255641. doi: 10.1126/science.1255641. Review.

26.

Multilocus adaptation associated with heat resistance in reef-building corals.

Bay RA, Palumbi SR.

Curr Biol. 2014 Dec 15;24(24):2952-6. doi: 10.1016/j.cub.2014.10.044. Epub 2014 Nov 26.

27.

Translational environmental biology: cell biology informing conservation.

Traylor-Knowles N, Palumbi SR.

Trends Cell Biol. 2014 May;24(5):265-7. doi: 10.1016/j.tcb.2014.03.001.

PMID:
24766840
28.

Mechanisms of reef coral resistance to future climate change.

Palumbi SR, Barshis DJ, Traylor-Knowles N, Bay RA.

Science. 2014 May 23;344(6186):895-8. doi: 10.1126/science.1251336. Epub 2014 Apr 24.

29.

Forensic genomics as a novel tool for identifying the causes of mass mortality events.

De Wit P, Rogers-Bennett L, Kudela RM, Palumbi SR.

Nat Commun. 2014 Apr 16;5:3652. doi: 10.1038/ncomms4652.

PMID:
24736548
30.

Lineage-specific transcriptional profiles of Symbiodinium spp. unaltered by heat stress in a coral host.

Barshis DJ, Ladner JT, Oliver TA, Palumbi SR.

Mol Biol Evol. 2014 Jun;31(6):1343-52. doi: 10.1093/molbev/msu107. Epub 2014 Mar 20.

PMID:
24651035
31.

Meta-analysis reveals lower genetic diversity in overfished populations.

Pinsky ML, Palumbi SR.

Mol Ecol. 2014 Jan;23(1):29-39. doi: 10.1111/mec.12509. Epub 2013 Oct 25.

PMID:
24372754
32.

Coral bleaching independent of photosynthetic activity.

Tolleter D, Seneca FO, DeNofrio JC, Krediet CJ, Palumbi SR, Pringle JR, Grossman AR.

Curr Biol. 2013 Sep 23;23(18):1782-6. doi: 10.1016/j.cub.2013.07.041. Epub 2013 Sep 5.

33.

Signs of adaptation to local pH conditions across an environmental mosaic in the California Current Ecosystem.

Pespeni MH, Chan F, Menge BA, Palumbi SR.

Integr Comp Biol. 2013 Nov;53(5):857-70. doi: 10.1093/icb/ict094. Epub 2013 Aug 26. Review.

PMID:
23980118
34.

The Ecology of Microbial Communities Associated with Macrocystis pyrifera.

Michelou VK, Caporaso JG, Knight R, Palumbi SR.

PLoS One. 2013 Jun 19;8(6):e67480. doi: 10.1371/journal.pone.0067480. Print 2013.

35.

Differences in the regulation of growth and biomineralization genes revealed through long-term common-garden acclimation and experimental genomics in the purple sea urchin.

Pespeni MH, Barney BT, Palumbi SR.

Evolution. 2013 Jul;67(7):1901-14. doi: 10.1111/evo.12036. Epub 2013 Jan 23.

PMID:
23815648
36.

Signals of selection in outlier loci in a widely dispersing species across an environmental mosaic.

Pespeni MH, Palumbi SR.

Mol Ecol. 2013 Jul;22(13):3580-97. doi: 10.1111/mec.12337.

PMID:
23802552
37.

Evolutionary change during experimental ocean acidification.

Pespeni MH, Sanford E, Gaylord B, Hill TM, Hosfelt JD, Jaris HK, LaVigne M, Lenz EA, Russell AD, Young MK, Palumbi SR.

Proc Natl Acad Sci U S A. 2013 Apr 23;110(17):6937-42. doi: 10.1073/pnas.1220673110. Epub 2013 Apr 8.

38.

Microevolution in time and space: SNP analysis of historical DNA reveals dynamic signatures of selection in Atlantic cod.

Therkildsen NO, Hemmer-Hansen J, Als TD, Swain DP, Morgan MJ, Trippel EA, Palumbi SR, Meldrup D, Nielsen EE.

Mol Ecol. 2013 May;22(9):2424-40. doi: 10.1111/mec.12260. Epub 2013 Mar 28.

PMID:
23551301
39.

Dispersal at a snail's pace: historical processes affect contemporary genetic structure in the exploited wavy top snail (Megastraea undosa).

Haupt AJ, Micheli F, Palumbi SR.

J Hered. 2013 May-Jun;104(3):327-40. doi: 10.1093/jhered/est002. Epub 2013 Feb 28.

PMID:
23450089
40.

Genomic basis for coral resilience to climate change.

Barshis DJ, Ladner JT, Oliver TA, Seneca FO, Traylor-Knowles N, Palumbi SR.

Proc Natl Acad Sci U S A. 2013 Jan 22;110(4):1387-92. doi: 10.1073/pnas.1210224110. Epub 2013 Jan 7.

41.
42.

Transcriptome-wide polymorphisms of red abalone (Haliotis rufescens) reveal patterns of gene flow and local adaptation.

De Wit P, Palumbi SR.

Mol Ecol. 2013 Jun;22(11):2884-97. doi: 10.1111/mec.12081. Epub 2012 Oct 29.

PMID:
23106543
43.

The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis.

De Wit P, Pespeni MH, Ladner JT, Barshis DJ, Seneca F, Jaris H, Therkildsen NO, Morikawa M, Palumbi SR.

Mol Ecol Resour. 2012 Nov;12(6):1058-67. doi: 10.1111/1755-0998.12003. Epub 2012 Aug 29.

PMID:
22931062
44.

Open and closed seascapes: where does habitat patchiness create populations with high fractions of self-recruitment?

Pinsky ML, Palumbi SR, Andréfouët S, Purkis SJ.

Ecol Appl. 2012 Jun;22(4):1257-67.

PMID:
22827133
45.

Pre-whaling genetic diversity and population ecology in eastern Pacific gray whales: insights from ancient DNA and stable isotopes.

Alter SE, Newsome SD, Palumbi SR.

PLoS One. 2012;7(5):e35039. doi: 10.1371/journal.pone.0035039. Epub 2012 May 9.

46.

Extensive sympatry, cryptic diversity and introgression throughout the geographic distribution of two coral species complexes.

Ladner JT, Palumbi SR.

Mol Ecol. 2012 May;21(9):2224-38. doi: 10.1111/j.1365-294X.2012.05528.x. Epub 2012 Mar 22.

PMID:
22439812
47.

Genome-wide polymorphisms show unexpected targets of natural selection.

Pespeni MH, Garfield DA, Manier MK, Palumbi SR.

Proc Biol Sci. 2012 Apr 7;279(1732):1412-20. doi: 10.1098/rspb.2011.1823. Epub 2011 Oct 12.

48.
49.

Unexpected patterns of fisheries collapse in the world's oceans.

Pinsky ML, Jensen OP, Ricard D, Palumbi SR.

Proc Natl Acad Sci U S A. 2011 May 17;108(20):8317-22. doi: 10.1073/pnas.1015313108. Epub 2011 May 2.

50.

Whole-genome positive selection and habitat-driven evolution in a shallow and a deep-sea urchin.

Oliver TA, Garfield DA, Manier MK, Haygood R, Wray GA, Palumbi SR.

Genome Biol Evol. 2010;2:800-14. doi: 10.1093/gbe/evq063. Epub 2010 Oct 8.

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