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Items: 25

1.

Allele-specific long-distance regulation dictates IL-32 isoform switching and mediates susceptibility to HIV-1.

Palstra RJ, de Crignis E, Röling MD, van Staveren T, Kan TW, van Ijcken W, Mueller YM, Katsikis PD, Mahmoudi T.

Sci Adv. 2018 Feb 21;4(2):e1701729. doi: 10.1126/sciadv.1701729. eCollection 2018 Feb.

2.

Allele-specific repression of Sox2 through the long non-coding RNA Sox2ot.

Messemaker TC, van Leeuwen SM, van den Berg PR, 't Jong AEJ, Palstra RJ, Hoeben RC, Semrau S, Mikkers HMM.

Sci Rep. 2018 Jan 10;8(1):386. doi: 10.1038/s41598-017-18649-4.

3.

Transcription: Insights From the HIV-1 Promoter.

Ne E, Palstra RJ, Mahmoudi T.

Int Rev Cell Mol Biol. 2018;335:191-243. doi: 10.1016/bs.ircmb.2017.07.011. Epub 2017 Oct 12. Review.

PMID:
29305013
4.

Small Molecule Inhibitors of BAF; A Promising Family of Compounds in HIV-1 Latency Reversal.

Stoszko M, De Crignis E, Rokx C, Khalid MM, Lungu C, Palstra RJ, Kan TW, Boucher C, Verbon A, Dykhuizen EC, Mahmoudi T.

EBioMedicine. 2015 Nov 27;3:108-121. doi: 10.1016/j.ebiom.2015.11.047. eCollection 2016 Jan.

5.

Nuclear positioning rather than contraction controls ordered rearrangements of immunoglobulin loci.

Rother MB, Palstra RJ, Jhunjhunwala S, van Kester KA, van IJcken WF, Hendriks RW, van Dongen JJ, Murre C, van Zelm MC.

Nucleic Acids Res. 2016 Jan 8;44(1):175-86. doi: 10.1093/nar/gkv928. Epub 2015 Sep 17.

6.

Genetics of skin color variation in Europeans: genome-wide association studies with functional follow-up.

Liu F, Visser M, Duffy DL, Hysi PG, Jacobs LC, Lao O, Zhong K, Walsh S, Chaitanya L, Wollstein A, Zhu G, Montgomery GW, Henders AK, Mangino M, Glass D, Bataille V, Sturm RA, Rivadeneira F, Hofman A, van IJcken WF, Uitterlinden AG, Palstra RJ, Spector TD, Martin NG, Nijsten TE, Kayser M.

Hum Genet. 2015 Aug;134(8):823-35. doi: 10.1007/s00439-015-1559-0. Epub 2015 May 12.

7.

Allele-specific transcriptional regulation of IRF4 in melanocytes is mediated by chromatin looping of the intronic rs12203592 enhancer to the IRF4 promoter.

Visser M, Palstra RJ, Kayser M.

Hum Mol Genet. 2015 May 1;24(9):2649-61. doi: 10.1093/hmg/ddv029. Epub 2015 Jan 27.

PMID:
25631878
8.

Human skin color is influenced by an intergenic DNA polymorphism regulating transcription of the nearby BNC2 pigmentation gene.

Visser M, Palstra RJ, Kayser M.

Hum Mol Genet. 2014 Nov 1;23(21):5750-62. doi: 10.1093/hmg/ddu289. Epub 2014 Jun 10.

PMID:
24916375
9.

Genetic variation in regulatory DNA elements: the case of OCA2 transcriptional regulation.

Visser M, Kayser M, Grosveld F, Palstra RJ.

Pigment Cell Melanoma Res. 2014 Mar;27(2):169-77. doi: 10.1111/pcmr.12210. Review.

PMID:
24387780
10.

Multiplexed chromosome conformation capture sequencing for rapid genome-scale high-resolution detection of long-range chromatin interactions.

Stadhouders R, Kolovos P, Brouwer R, Zuin J, van den Heuvel A, Kockx C, Palstra RJ, Wendt KS, Grosveld F, van Ijcken W, Soler E.

Nat Protoc. 2013 Mar;8(3):509-24. doi: 10.1038/nprot.2013.018. Epub 2013 Feb 14.

PMID:
23411633
11.

Transcription factor binding at enhancers: shaping a genomic regulatory landscape in flux.

Palstra RJ, Grosveld F.

Front Genet. 2012 Sep 28;3:195. doi: 10.3389/fgene.2012.00195. eCollection 2012.

12.

HERC2 rs12913832 modulates human pigmentation by attenuating chromatin-loop formation between a long-range enhancer and the OCA2 promoter.

Visser M, Kayser M, Palstra RJ.

Genome Res. 2012 Mar;22(3):446-55. doi: 10.1101/gr.128652.111. Epub 2012 Jan 10.

13.

Dynamic long-range chromatin interactions control Myb proto-oncogene transcription during erythroid development.

Stadhouders R, Thongjuea S, Andrieu-Soler C, Palstra RJ, Bryne JC, van den Heuvel A, Stevens M, de Boer E, Kockx C, van der Sloot A, van den Hout M, van Ijcken W, Eick D, Lenhard B, Grosveld F, Soler E.

EMBO J. 2012 Feb 15;31(4):986-99. doi: 10.1038/emboj.2011.450. Epub 2011 Dec 13.

14.

The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation.

Soler E, Andrieu-Soler C, de Boer E, Bryne JC, Thongjuea S, Stadhouders R, Palstra RJ, Stevens M, Kockx C, van Ijcken W, Hou J, Steinhoff C, Rijkers E, Lenhard B, Grosveld F.

Genes Dev. 2010 Feb 1;24(3):277-89. doi: 10.1101/gad.551810. Erratum in: Genes Dev. 2010 Mar 15;24(6):623.

15.

Close encounters of the 3C kind: long-range chromatin interactions and transcriptional regulation.

Palstra RJ.

Brief Funct Genomic Proteomic. 2009 Jul;8(4):297-309. doi: 10.1093/bfgp/elp016. Epub 2009 Jun 17. Review.

PMID:
19535505
16.

Maintenance of long-range DNA interactions after inhibition of ongoing RNA polymerase II transcription.

Palstra RJ, Simonis M, Klous P, Brasset E, Eijkelkamp B, de Laat W.

PLoS One. 2008 Feb 20;3(2):e1661. doi: 10.1371/journal.pone.0001661.

17.

Three-dimensional organization of gene expression in erythroid cells.

de Laat W, Klous P, Kooren J, Noordermeer D, Palstra RJ, Simonis M, Splinter E, Grosveld F.

Curr Top Dev Biol. 2008;82:117-39. doi: 10.1016/S0070-2153(07)00005-1. Review.

PMID:
18282519
18.

Beta-globin regulation and long-range interactions.

Palstra RJ, de Laat W, Grosveld F.

Adv Genet. 2008;61:107-42. doi: 10.1016/S0065-2660(07)00004-1. Review.

PMID:
18282504
19.

Beta-globin active chromatin Hub formation in differentiating erythroid cells and in p45 NF-E2 knock-out mice.

Kooren J, Palstra RJ, Klous P, Splinter E, von Lindern M, Grosveld F, de Laat W.

J Biol Chem. 2007 Jun 1;282(22):16544-52. Epub 2007 Apr 11.

20.

Elongation factor Tu3 (EF-Tu3) from the kirromycin producer Streptomyces ramocissimus Is resistant to three classes of EF-Tu-specific inhibitors.

Olsthoorn-Tieleman LN, Palstra RJ, van Wezel GP, Bibb MJ, Pleij CW.

J Bacteriol. 2007 May;189(9):3581-90. Epub 2007 Mar 2.

21.

CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus.

Splinter E, Heath H, Kooren J, Palstra RJ, Klous P, Grosveld F, Galjart N, de Laat W.

Genes Dev. 2006 Sep 1;20(17):2349-54.

22.

The active spatial organization of the beta-globin locus requires the transcription factor EKLF.

Drissen R, Palstra RJ, Gillemans N, Splinter E, Grosveld F, Philipsen S, de Laat W.

Genes Dev. 2004 Oct 15;18(20):2485-90.

23.

The beta-globin nuclear compartment in development and erythroid differentiation.

Palstra RJ, Tolhuis B, Splinter E, Nijmeijer R, Grosveld F, de Laat W.

Nat Genet. 2003 Oct;35(2):190-4. Epub 2003 Sep 21.

PMID:
14517543
24.

Looping and interaction between hypersensitive sites in the active beta-globin locus.

Tolhuis B, Palstra RJ, Splinter E, Grosveld F, de Laat W.

Mol Cell. 2002 Dec;10(6):1453-65.

25.

Annexin VI participates in the formation of a reversible, membrane-cytoskeleton complex in smooth muscle cells.

Babiychuk EB, Palstra RJ, Schaller J, Kämpfer U, Draeger A.

J Biol Chem. 1999 Dec 3;274(49):35191-5.

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