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Items: 39

1.

Return to the sea, get huge, beat cancer: an analysis of cetacean genomes including an assembly for the humpback whale (Megaptera novaeangliae).

Tollis M, Robbins J, Webb AE, Kuderna LFK, Caulin AF, Garcia JD, Bèrubè M, Pourmand N, Marques-Bonet T, O'Connell MJ, Palsbøll PJ, Maley CC.

Mol Biol Evol. 2019 May 9. pii: msz099. doi: 10.1093/molbev/msz099. [Epub ahead of print]

PMID:
31070747
2.

Decline in abundance and apparent survival rates of fin whales (Balaenoptera physalus) in the northern Gulf of St. Lawrence.

Schleimer A, Ramp C, Delarue J, Carpentier A, Bérubé M, Palsbøll PJ, Sears R, Hammond PS.

Ecol Evol. 2019 Mar 15;9(7):4231-4244. doi: 10.1002/ece3.5055. eCollection 2019 Apr.

3.

Fin whale (Balaenoptera physalus) mitogenomics: A cautionary tale of defining sub-species from mitochondrial sequence monophyly.

Cabrera AA, Hoekendijk JPA, Aguilar A, Barco SG, Berrow S, Bloch D, Borrell A, Cunha HA, Dalla Rosa L, Dias CP, Gauffier P, Hao W, Landry S, Larsen F, Martín V, Mizroch S, Oosting T, Øien N, Pampoulie C, Panigada S, Prieto R, Ramp C, Rivera-Léon V, Robbins J, Ryan C, Schall E, Sears R, Silva MA, Urbán J, Wenzel FW, Palsbøll PJ, Bérubé M.

Mol Phylogenet Evol. 2019 Jun;135:86-97. doi: 10.1016/j.ympev.2019.02.003. Epub 2019 Feb 13.

4.

Incorporating non-equilibrium dynamics into demographic history inferences of a migratory marine species.

Carroll EL, Alderman R, Bannister JL, Bérubé M, Best PB, Boren L, Baker CS, Constantine R, Findlay K, Harcourt R, Lemaire L, Palsbøll PJ, Patenaude NJ, Rowntree VJ, Seger J, Steel D, Valenzuela LO, Watson M, Gaggiotti OE.

Heredity (Edinb). 2019 Jan;122(1):53-68. doi: 10.1038/s41437-018-0077-y. Epub 2018 May 3.

PMID:
29720718
5.

Mind the gut: genomic insights to population divergence and gut microbial composition of two marine keystone species.

Fietz K, Rye Hintze CO, Skovrind M, Kjærgaard Nielsen T, Limborg MT, Krag MA, Palsbøll PJ, Hestbjerg Hansen L, Rask Møller P, Gilbert MTP.

Microbiome. 2018 May 2;6(1):82. doi: 10.1186/s40168-018-0467-7.

6.

Genomics meets applied ecology: Characterizing habitat quality for sloths in a tropical agroecosystem.

Fountain ED, Kang JK, Tempel DJ, Palsbøll PJ, Pauli JN, Zachariah Peery M.

Mol Ecol. 2018 Jan;27(1):41-53. doi: 10.1111/mec.14388. Epub 2017 Dec 6.

PMID:
29080363
7.

Inferring past demographic changes from contemporary genetic data: A simulation-based evaluation of the ABC methods implemented in diyabc.

Cabrera AA, Palsbøll PJ.

Mol Ecol Resour. 2017 Nov;17(6):e94-e110. doi: 10.1111/1755-0998.12696. Epub 2017 Jul 25.

PMID:
28654208
8.

Shift of grey seal subspecies boundaries in response to climate, culling and conservation.

Fietz K, Galatius A, Teilmann J, Dietz R, Frie AK, Klimova A, Palsbøll PJ, Jensen LF, Graves JA, Hoffman JI, Olsen MT.

Mol Ecol. 2016 Sep;25(17):4097-112. doi: 10.1111/mec.13748.

PMID:
27616353
9.

Linking Genetic Kinship and Demographic Analyses to Characterize Dispersal: Methods and Application to Blanding's Turtle.

Reid BN, Thiel RP, Palsbøll PJ, Peery MZ.

J Hered. 2016;107(7):603-614. Epub 2016 Aug 23.

PMID:
27552818
10.

Finding the right coverage: the impact of coverage and sequence quality on single nucleotide polymorphism genotyping error rates.

Fountain ED, Pauli JN, Reid BN, Palsbøll PJ, Peery MZ.

Mol Ecol Resour. 2016 Jul;16(4):966-78. doi: 10.1111/1755-0998.12519. Epub 2016 Mar 25.

PMID:
26946083
11.
12.

Adapting to a warmer ocean--seasonal shift of baleen whale movements over three decades.

Ramp C, Delarue J, Palsbøll PJ, Sears R, Hammond PS.

PLoS One. 2015 Mar 18;10(3):e0121374. doi: 10.1371/journal.pone.0121374. eCollection 2015.

13.

Fin whale MDH-1 and MPI allozyme variation is not reflected in the corresponding DNA sequences.

Olsen MT, Pampoulie C, Daníelsdóttir AK, Lidh E, Bérubé M, Víkingsson GA, Palsbøll PJ.

Ecol Evol. 2014 May;4(10):1787-803. doi: 10.1002/ece3.1046. Epub 2014 Apr 16.

14.

Inferring recent historic abundance from current genetic diversity.

Palsbøll PJ, Zachariah Peery M, Olsen MT, Beissinger SR, Bérubé M.

Mol Ecol. 2013 Jan;22(1):22-40. doi: 10.1111/mec.12094. Epub 2012 Nov 26. Review.

PMID:
23181682
15.
16.

Reliability of genetic bottleneck tests for detecting recent population declines.

Peery MZ, Kirby R, Reid BN, Stoelting R, Doucet-Bëer E, Robinson S, Vásquez-Carrillo C, Pauli JN, Palsbøll PJ.

Mol Ecol. 2012 Jul;21(14):3403-18. doi: 10.1111/j.1365-294X.2012.05635.x. Epub 2012 May 30. Review.

PMID:
22646281
17.

How many genetic markers to tag an individual? An empirical assessment of false matching rates among close relatives.

Rew MB, Robbins J, Mattila D, Palsbøll PJ, Bérube M.

Ecol Appl. 2011 Apr;21(3):877-87.

PMID:
21639051
18.

Detecting populations in the 'ambiguous' zone: kinship-based estimation of population structure at low genetic divergence.

Palsbøll PJ, Zachariah Peery M, Bérubé M.

Mol Ecol Resour. 2010 Sep;10(5):797-805. doi: 10.1111/j.1755-0998.2010.02887.x. Epub 2010 Jun 7.

PMID:
21565091
19.

Detecting dyads of related individuals in large collections of DNA-profiles by controlling the false discovery rate.

Skaug HJ, Bérubé M, Palsbøll PJ.

Mol Ecol Resour. 2010 Jul;10(4):693-700. doi: 10.1111/j.1755-0998.2010.02833.x. Epub 2010 Feb 23.

PMID:
21565074
20.

A simple route to single-nucleotide polymorphisms in a nonmodel species: identification and characterization of SNPs in the Artic ringed seal (Pusa hispida hispida).

Olsen MT, Volny VH, Bérubé M, Dietz R, Lydersen C, Kovacs KM, Dodd RS, Palsbøll PJ.

Mol Ecol Resour. 2011 Mar;11 Suppl 1:9-19. doi: 10.1111/j.1755-0998.2010.02941.x. Epub 2011 Jan 10.

PMID:
21429159
21.

Characterizing dispersal patterns in a threatened seabird with limited genetic structure.

Hall LA, Palsbøll PJ, Beissinger SR, Harvey JT, Bérubé M, Raphael MG, Nelson SK, Golightly RT, McFarlane-Tranquilla L, Newman SH, Peery MZ.

Mol Ecol. 2009 Dec;18(24):5074-85. doi: 10.1111/j.1365-294X.2009.04416.x. Epub 2009 Nov 13.

PMID:
19912540
22.

Genetic analyses of historic and modern marbled murrelets suggest decoupling of migration and gene flow after habitat fragmentation.

Peery MZ, Hall LA, Sellas A, Beissinger SR, Moritz C, Bérubé M, Raphael MG, Nelson SK, Golightly RT, McFarlane-Tranquilla L, Newman S, Palsbøll PJ.

Proc Biol Sci. 2010 Mar 7;277(1682):697-706. doi: 10.1098/rspb.2009.1666. Epub 2009 Nov 11.

23.

Characterizing source-sink dynamics with genetic parentage assignments.

Peery MZ, Beissinger SR, House RF, Bérubé M, Hall LA, Sellas A, Palsbøll PJ.

Ecology. 2008 Oct;89(10):2746-59.

PMID:
18959312
24.

Could genetic diversity in eastern North Pacific gray whales reflect global historic abundance?

Palsbøll PJ, Bérubé M, Larsen F.

Proc Natl Acad Sci U S A. 2007 Dec 26;104(52):E2; author reply E3. Epub 2007 Dec 18. No abstract available.

25.

Radiation and speciation of pelagic organisms during periods of global warming: the case of the common minke whale, Balaenoptera acutorostrata.

Pastene LA, Goto M, Kanda N, Zerbini AN, Kerem D, Watanabe K, Bessho Y, Hasegawa M, Nielsen R, Larsen F, Palsbøll PJ.

Mol Ecol. 2007 Apr;16(7):1481-95.

PMID:
17391271
26.

Elevation and connectivity define genetic refugia for mountain sheep as climate warms.

Epps CW, Palsbøll PJ, Wehausen JD, Roderick GK, McCullough DR.

Mol Ecol. 2006 Dec;15(14):4295-302.

PMID:
17107466
27.

Identification of management units using population genetic data.

Palsbøll PJ, Bérubé M, Allendorf FW.

Trends Ecol Evol. 2007 Jan;22(1):11-6. Epub 2006 Sep 18.

PMID:
16982114
28.

DNA registers of legally obtained wildlife and derived products as means to identify illegal takes.

Palsbøll PJ, Bérubé M, Skaug HJ, Raymakers C.

Conserv Biol. 2006 Aug;20(4):1284-93.

PMID:
16922244
29.
30.

Conflicts around a study of Mexican crops.

Suarez AV, Bernard M, Tsutsui ND, Blackledge TA, Copren K, Sarnat EM, Wild AL, Getz WM, Starks PT, Will K, Palsbøll PJ, Hauber ME, Moritz C, Richman AD.

Nature. 2002 Jun 27;417(6892):897; author reply 897-8. No abstract available.

PMID:
12087376
31.
32.

Polymorphic di-nucleotide microsatellite loci isolated from the humpback whale, Megaptera novaeangliae.

Bérubé M, Jørgensen H, McEwing R, Palsbøll PJ.

Mol Ecol. 2000 Dec;9(12):2181-3. No abstract available.

PMID:
11123643
33.

Single-locus tests of microsatellite evolution: multi-step mutations and constraints on allele size.

Nielsen R, Palsbøll PJ.

Mol Phylogenet Evol. 1999 Apr;11(3):477-84.

PMID:
10196086
34.
35.

Population genetic structure of North Atlantic, Mediterranean Sea and Sea of Cortez fin whales, Balaenoptera physalus (Linnaeus 1758): analysis of mitochondrial and nuclear loci.

Bérubé M, Aguilar A, Dendanto D, Larsen F, Notarbartolo di Sciara G, Sears R, Sigurjónsson J, Urban-R J, Palsbøll PJ.

Mol Ecol. 1998 May;7(5):585-99.

PMID:
9633102
36.

Primers for the amplification of tri- and tetramer microsatellite loci in baleen whales.

Palsbøll PJ, Bérubé M, Larsen AH, Jørgensen H.

Mol Ecol. 1997 Sep;6(9):893-5. No abstract available.

PMID:
9301078
37.

Genetic tagging of humpback whales.

Palsbøll PJ, Allen J, Bérubé M, Clapham PJ, Feddersen TP, Hammond PS, Hudson RR, Jørgensen H, Katona S, Larsen AH, Larsen F, Lien J, Mattila DK, Sigurjónsson J, Sears R, Smith T, Sponer R, Stevick P, Oien N.

Nature. 1997 Aug 21;388(6644):767-9.

PMID:
9285587
38.

Population structure and seasonal movements of narwhals, Monodon monoceros, determined from mtDNA analysis.

Palsbøll PJ, Heide-Jørgensen MP, Dietz R.

Heredity (Edinb). 1997 Mar;78 ( Pt 3):284-92.

39.

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