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Items: 31

1.

Effect of in vitro digestion-fermentation on green and roasted coffee bioactivity: The role of the gut microbiota.

Pérez-Burillo S, Mehta T, Esteban-Muñoz A, Pastoriza S, Paliy O, Ángel Rufián-Henares J.

Food Chem. 2019 May 1;279:252-259. doi: 10.1016/j.foodchem.2018.11.137. Epub 2018 Dec 5.

PMID:
30611488
2.

Dietary Fatty Acids Sustain the Growth of the Human Gut Microbiota.

Agans R, Gordon A, Kramer DL, Perez-Burillo S, Rufián-Henares JA, Paliy O.

Appl Environ Microbiol. 2018 Oct 17;84(21). pii: e01525-18. doi: 10.1128/AEM.01525-18. Print 2018 Nov 1.

PMID:
30242004
3.

Intestinal Epithelial Cells Regulate Gut Eotaxin Responses and Severity of Allergy.

Kim E, Lembert M, Fallata GM, Rowe JC, Martin TL, Satoskar AR, Reo NV, Paliy O, Cormet-Boyaka E, Boyaka PN.

Front Immunol. 2018 Aug 3;9:1692. doi: 10.3389/fimmu.2018.01692. eCollection 2018.

4.

Effects of oral Akkermansia muciniphila supplementation in healthy dogs following antimicrobial administration.

Jugan MC, Rudinsky AJ, Gordon A, Kramer DL, Daniels JB, Paliy O, Boyaka P, Gilor C.

Am J Vet Res. 2018 Aug;79(8):884-892. doi: 10.2460/ajvr.79.8.884.

PMID:
30058857
5.

Identification of novel ΔNp63α-regulated miRNAs using an optimized small RNA-Seq analysis pipeline.

Sakaram S, Craig MP, Hill NT, Aljagthmi A, Garrido C, Paliy O, Bottomley M, Raymer M, Kadakia MP.

Sci Rep. 2018 Jul 3;8(1):10069. doi: 10.1038/s41598-018-28168-5.

6.

Advantages of phylogenetic distance based constrained ordination analyses for the examination of microbial communities.

Shankar V, Agans R, Paliy O.

Sci Rep. 2017 Jul 25;7(1):6481. doi: 10.1038/s41598-017-06693-z.

7.

Differences in Gut Metabolites and Microbial Composition and Functions between Egyptian and U.S. Children Are Consistent with Their Diets.

Shankar V, Gouda M, Moncivaiz J, Gordon A, Reo NV, Hussein L, Paliy O.

mSystems. 2017 Feb 7;2(1). pii: e00169-16. doi: 10.1128/mSystems.00169-16. eCollection 2017 Jan-Feb.

8.

Application of multivariate statistical techniques in microbial ecology.

Paliy O, Shankar V.

Mol Ecol. 2016 Mar;25(5):1032-57. doi: 10.1111/mec.13536. Review.

9.
10.

Altered gut microbial energy and metabolism in children with non-alcoholic fatty liver disease.

Michail S, Lin M, Frey MR, Fanter R, Paliy O, Hilbush B, Reo NV.

FEMS Microbiol Ecol. 2015 Feb;91(2):1-9. doi: 10.1093/femsec/fiu002. Epub 2014 Dec 5.

11.

The networks of human gut microbe-metabolite associations are different between health and irritable bowel syndrome.

Shankar V, Homer D, Rigsbee L, Khamis HJ, Michail S, Raymer M, Reo NV, Paliy O.

ISME J. 2015 Aug;9(8):1899-903. doi: 10.1038/ismej.2014.258. Epub 2015 Jan 30.

12.

Species and genus level resolution analysis of gut microbiota in Clostridium difficile patients following fecal microbiota transplantation.

Shankar V, Hamilton MJ, Khoruts A, Kilburn A, Unno T, Paliy O, Sadowsky MJ.

Microbiome. 2014 Apr 21;2:13. doi: 10.1186/2049-2618-2-13. eCollection 2014.

13.

Excess body weight during pregnancy and offspring obesity: potential mechanisms.

Paliy O, Piyathilake CJ, Kozyrskyj A, Celep G, Marotta F, Rastmanesh R.

Nutrition. 2014 Mar;30(3):245-51. doi: 10.1016/j.nut.2013.05.011. Epub 2013 Oct 6. Review.

PMID:
24103493
14.

Do gut microbial communities differ in pediatric IBS and health?

Shankar V, Agans R, Holmes B, Raymer M, Paliy O.

Gut Microbes. 2013 Jul-Aug;4(4):347-52. doi: 10.4161/gmic.24827. Epub 2013 May 2.

15.

Transcriptional responses of uropathogenic Escherichia coli to increased environmental osmolality caused by salt or urea.

Withman B, Gunasekera TS, Beesetty P, Agans R, Paliy O.

Infect Immun. 2013 Jan;81(1):80-9. doi: 10.1128/IAI.01049-12. Epub 2012 Oct 22.

16.

Quantitative profiling of gut microbiota of children with diarrhea-predominant irritable bowel syndrome.

Rigsbee L, Agans R, Shankar V, Kenche H, Khamis HJ, Michail S, Paliy O.

Am J Gastroenterol. 2012 Nov;107(11):1740-51.

PMID:
22986438
17.

Application of phylogenetic microarrays to interrogation of human microbiota.

Paliy O, Agans R.

FEMS Microbiol Ecol. 2012 Jan;79(1):2-11. doi: 10.1111/j.1574-6941.2011.01222.x. Epub 2011 Nov 9. Review.

18.
19.

Distal gut microbiota of adolescent children is different from that of adults.

Agans R, Rigsbee L, Kenche H, Michail S, Khamis HJ, Paliy O.

FEMS Microbiol Ecol. 2011 Aug;77(2):404-12. doi: 10.1111/j.1574-6941.2011.01120.x. Epub 2011 Jun 1.

20.

Expression and functional roles of Bradyrhizobium japonicum genes involved in the utilization of inorganic and organic sulfur compounds in free-living and symbiotic conditions.

Sugawara M, Shah GR, Sadowsky MJ, Paliy O, Speck J, Vail AW, Gyaneshwar P.

Mol Plant Microbe Interact. 2011 Apr;24(4):451-7. doi: 10.1094/MPMI-08-10-0184.

21.

Optimizing the analysis of human intestinal microbiota with phylogenetic microarray.

Rigsbee L, Agans R, Foy BD, Paliy O.

FEMS Microbiol Ecol. 2011 Feb;75(2):332-42. doi: 10.1111/j.1574-6941.2010.01009.x. Epub 2010 Dec 13.

22.

High-throughput quantitative analysis of the human intestinal microbiota with a phylogenetic microarray.

Paliy O, Kenche H, Abernathy F, Michail S.

Appl Environ Microbiol. 2009 Jun;75(11):3572-9. doi: 10.1128/AEM.02764-08. Epub 2009 Apr 10.

23.

Protein disorder is positively correlated with gene expression in Escherichia coli.

Paliy O, Gargac SM, Cheng Y, Uversky VN, Dunker AK.

J Proteome Res. 2008 Jun;7(6):2234-45. doi: 10.1021/pr800055r. Epub 2008 May 9.

24.

Genome-wide transcriptional responses of Escherichia coli K-12 to continuous osmotic and heat stresses.

Gunasekera TS, Csonka LN, Paliy O.

J Bacteriol. 2008 May;190(10):3712-20. doi: 10.1128/JB.01990-07. Epub 2008 Mar 21.

25.

Growth of E. coli BL21 in minimal media with different gluconeogenic carbon sources and salt contents.

Paliy O, Gunasekera TS.

Appl Microbiol Biotechnol. 2007 Jan;73(5):1169-72. Epub 2006 Aug 30. Erratum in: Appl Microbiol Biotechnol. 2006 Dec;73(4):968.

PMID:
16944129
26.

Lessons from Escherichia coli genes similarly regulated in response to nitrogen and sulfur limitation.

Gyaneshwar P, Paliy O, McAuliffe J, Jones A, Jordan MI, Kustu S.

Proc Natl Acad Sci U S A. 2005 Mar 1;102(9):3453-8. Epub 2005 Feb 16.

27.

Sulfur and nitrogen limitation in Escherichia coli K-12: specific homeostatic responses.

Gyaneshwar P, Paliy O, McAuliffe J, Popham DL, Jordan MI, Kustu S.

J Bacteriol. 2005 Feb;187(3):1074-90.

28.

Genome image programs: visualization and interpretation of Escherichia coli microarray experiments.

Zimmer DP, Paliy O, Thomas B, Gyaneshwar P, Kustu S.

Genetics. 2004 Aug;167(4):2111-9.

29.

Physiological studies of Escherichia coli strain MG1655: growth defects and apparent cross-regulation of gene expression.

Soupene E, van Heeswijk WC, Plumbridge J, Stewart V, Bertenthal D, Lee H, Prasad G, Paliy O, Charernnoppakul P, Kustu S.

J Bacteriol. 2003 Sep;185(18):5611-26.

30.

Toward a protein profile of Escherichia coli: comparison to its transcription profile.

Corbin RW, Paliy O, Yang F, Shabanowitz J, Platt M, Lyons CE Jr, Root K, McAuliffe J, Jordan MI, Kustu S, Soupene E, Hunt DF.

Proc Natl Acad Sci U S A. 2003 Aug 5;100(16):9232-7. Epub 2003 Jul 23.

31.

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