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Items: 20

1.

A TetR-Family Protein (CAETHG_0459) Activates Transcription From a New Promoter Motif Associated With Essential Genes for Autotrophic Growth in Acetogens.

de Souza Pinto Lemgruber R, Valgepea K, Gonzalez Garcia RA, de Bakker C, Palfreyman RW, Tappel R, Köpke M, Simpson SD, Nielsen LK, Marcellin E.

Front Microbiol. 2019 Nov 15;10:2549. doi: 10.3389/fmicb.2019.02549. eCollection 2019.

2.

Systems-level engineering and characterisation of Clostridium autoethanogenum through heterologous production of poly-3-hydroxybutyrate (PHB).

de Souza Pinto Lemgruber R, Valgepea K, Tappel R, Behrendorff JB, Palfreyman RW, Plan M, Hodson MP, Simpson SD, Nielsen LK, Köpke M, Marcellin E.

Metab Eng. 2019 May;53:14-23. doi: 10.1016/j.ymben.2019.01.003. Epub 2019 Jan 11.

PMID:
30641139
3.

Effect of Plasmid Design and Type of Integration Event on Recombinant Protein Expression in Pichia pastoris.

Vogl T, Gebbie L, Palfreyman RW, Speight R.

Appl Environ Microbiol. 2018 Mar 1;84(6). pii: e02712-17. doi: 10.1128/AEM.02712-17. Print 2018 Mar 15.

4.

RNA-Seq Highlights High Clonal Variation in Monoclonal Antibody Producing CHO Cells.

Orellana CA, Marcellin E, Palfreyman RW, Munro TP, Gray PP, Nielsen LK.

Biotechnol J. 2018 Mar;13(3):e1700231. doi: 10.1002/biot.201700231. Epub 2018 Feb 1.

PMID:
29316330
5.

Maintenance of ATP Homeostasis Triggers Metabolic Shifts in Gas-Fermenting Acetogens.

Valgepea K, de Souza Pinto Lemgruber R, Meaghan K, Palfreyman RW, Abdalla T, Heijstra BD, Behrendorff JB, Tappel R, Köpke M, Simpson SD, Nielsen LK, Marcellin E.

Cell Syst. 2017 May 24;4(5):505-515.e5. doi: 10.1016/j.cels.2017.04.008. Epub 2017 May 17.

6.

Improved production of propionic acid using genome shuffling.

Luna-Flores CH, Palfreyman RW, Krömer JO, Nielsen LK, Marcellin E.

Biotechnol J. 2017 Feb;12(2). doi: 10.1002/biot.201600120. Epub 2016 Oct 20.

PMID:
27676587
7.

Metabolic Reconstruction of Setaria italica: A Systems Biology Approach for Integrating Tissue-Specific Omics and Pathway Analysis of Bioenergy Grasses.

de Oliveira Dal'Molin CG, Orellana C, Gebbie L, Steen J, Hodson MP, Chrysanthopoulos P, Plan MR, McQualter R, Palfreyman RW, Nielsen LK.

Front Plant Sci. 2016 Aug 10;7:1138. doi: 10.3389/fpls.2016.01138. eCollection 2016.

8.

Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals.

Ormerod KL, Wood DL, Lachner N, Gellatly SL, Daly JN, Parsons JD, Dal'Molin CG, Palfreyman RW, Nielsen LK, Cooper MA, Morrison M, Hansbro PM, Hugenholtz P.

Microbiome. 2016 Jul 7;4(1):36. doi: 10.1186/s40168-016-0181-2.

9.

Systems biology and metabolic modelling unveils limitations to polyhydroxybutyrate accumulation in sugarcane leaves; lessons for C4 engineering.

McQualter RB, Bellasio C, Gebbie LK, Petrasovits LA, Palfreyman RW, Hodson MP, Plan MR, Blackman DM, Brumbley SM, Nielsen LK.

Plant Biotechnol J. 2016 Feb;14(2):567-80. doi: 10.1111/pbi.12399. Epub 2015 May 25.

10.

Evolutionary Engineering Improves Tolerance for Replacement Jet Fuels in Saccharomyces cerevisiae.

Brennan TC, Williams TC, Schulz BL, Palfreyman RW, Krömer JO, Nielsen LK.

Appl Environ Microbiol. 2015 May 15;81(10):3316-25. doi: 10.1128/AEM.04144-14. Epub 2015 Mar 6.

11.

Plant genome-scale modeling and implementation.

Dal'molin CG, Quek LE, Palfreyman RW, Nielsen LK.

Methods Mol Biol. 2014;1090:317-32. doi: 10.1007/978-1-62703-688-7_19.

PMID:
24222424
12.

Re-annotation of the Saccharopolyspora erythraea genome using a systems biology approach.

Marcellin E, Licona-Cassani C, Mercer TR, Palfreyman RW, Nielsen LK.

BMC Genomics. 2013 Oct 11;14:699. doi: 10.1186/1471-2164-14-699.

13.

Saccharopolyspora erythraea's genome is organised in high-order transcriptional regions mediated by targeted degradation at the metabolic switch.

Marcellin E, Mercer TR, Licona-Cassani C, Palfreyman RW, Dinger ME, Steen JA, Mattick JS, Nielsen LK.

BMC Genomics. 2013 Jan 16;14:15. doi: 10.1186/1471-2164-14-15.

14.

Transcriptome sequencing of and microarray development for a Helicoverpa zea cell line to investigate in vitro insect cell-baculovirus interactions.

Nguyen Q, Palfreyman RW, Chan LC, Reid S, Nielsen LK.

PLoS One. 2012;7(5):e36324. doi: 10.1371/journal.pone.0036324. Epub 2012 May 18.

15.

AlgaGEM--a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genome.

Dal'Molin CG, Quek LE, Palfreyman RW, Nielsen LK.

BMC Genomics. 2011 Dec 22;12 Suppl 4:S5. doi: 10.1186/1471-2164-12-S4-S5. Epub 2011 Dec 22.

16.

Deep sequencing-based transcriptome analysis of Plutella xylostella larvae parasitized by Diadegma semiclausum.

Etebari K, Palfreyman RW, Schlipalius D, Nielsen LK, Glatz RV, Asgari S.

BMC Genomics. 2011 Sep 9;12:446. doi: 10.1186/1471-2164-12-446.

17.

C4GEM, a genome-scale metabolic model to study C4 plant metabolism.

Dal'Molin CG, Quek LE, Palfreyman RW, Brumbley SM, Nielsen LK.

Plant Physiol. 2010 Dec;154(4):1871-85. doi: 10.1104/pp.110.166488. Epub 2010 Oct 25.

18.

AraGEM, a genome-scale reconstruction of the primary metabolic network in Arabidopsis.

de Oliveira Dal'Molin CG, Quek LE, Palfreyman RW, Brumbley SM, Nielsen LK.

Plant Physiol. 2010 Feb;152(2):579-89. doi: 10.1104/pp.109.148817. Epub 2009 Dec 31.

19.
20.

Kinetic resolution of the separate GLUT1 and GLUT4 glucose transport activities in 3T3-L1 cells.

Palfreyman RW, Clark AE, Denton RM, Holman GD, Kozka IJ.

Biochem J. 1992 May 15;284 ( Pt 1):275-82.

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