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Items: 50

1.

Detection of MicroRNA Processing Intermediates Through RNA Ligation Approaches.

Moro B, Rojas AML, Palatnik JF.

Methods Mol Biol. 2019;1932:261-283. doi: 10.1007/978-1-4939-9042-9_20.

PMID:
30701507
2.

Analysis of Expression Gradients of Developmental Regulators in Arabidopsis thaliana Roots.

Ercoli MF, Vena R, Goldy C, Palatnik JF, Rodríguez RE.

Methods Mol Biol. 2018;1863:3-17. doi: 10.1007/978-1-4939-8772-6_1. Erratum in: Methods Mol Biol. 2018;1863:E1.

PMID:
30324589
3.

Efficiency and precision of microRNA biogenesis modes in plants.

Moro B, Chorostecki U, Arikit S, Suarez IP, Höbartner C, Rasia RM, Meyers BC, Palatnik JF.

Nucleic Acids Res. 2018 Nov 16;46(20):10709-10723. doi: 10.1093/nar/gky853.

4.

Editorial overview: Cell signalling and gene regulation: Something new, something old, something borrowed, something blue.

Palatnik JF, Casal JJ.

Curr Opin Plant Biol. 2018 Oct;45(Pt A):185-187. doi: 10.1016/j.pbi.2018.09.007. Epub 2018 Sep 28. No abstract available.

PMID:
30273925
5.

Robust increase of leaf size by Arabidopsis thaliana GRF3-like transcription factors under different growth conditions.

Beltramino M, Ercoli MF, Debernardi JM, Goldy C, Rojas AML, Nota F, Alvarez ME, Vercruyssen L, Inzé D, Palatnik JF, Rodriguez RE.

Sci Rep. 2018 Sep 7;8(1):13447. doi: 10.1038/s41598-018-29859-9.

6.

GIF Transcriptional Coregulators Control Root Meristem Homeostasis.

Ercoli MF, Ferela A, Debernardi JM, Perrone AP, Rodriguez RE, Palatnik JF.

Plant Cell. 2018 Feb;30(2):347-359. doi: 10.1105/tpc.17.00856. Epub 2018 Jan 18.

7.

Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.

Bresso EG, Chorostecki U, Rodriguez RE, Palatnik JF, Schommer C.

Plant Physiol. 2018 Feb;176(2):1694-1708. doi: 10.1104/pp.17.00823. Epub 2017 Nov 13.

8.

Evolutionary Footprints Reveal Insights into Plant MicroRNA Biogenesis.

Chorostecki U, Moro B, Rojas AML, Debernardi JM, Schapire AL, Notredame C, Palatnik JF.

Plant Cell. 2017 Jun;29(6):1248-1261. doi: 10.1105/tpc.17.00272. Epub 2017 May 26.

9.

Control of cell proliferation by microRNAs in plants.

Rodriguez RE, Schommer C, Palatnik JF.

Curr Opin Plant Biol. 2016 Dec;34:68-76. doi: 10.1016/j.pbi.2016.10.003. Epub 2016 Oct 26. Review.

PMID:
27794260
10.

Control of cell proliferation and elongation by miR396.

Ercoli MF, Rojas AM, Debernardi JM, Palatnik JF, Rodriguez RE.

Plant Signal Behav. 2016 Jun 2;11(6):e1184809. doi: 10.1080/15592324.2016.1184809.

11.

MicroRNA miR396 Regulates the Switch between Stem Cells and Transit-Amplifying Cells in Arabidopsis Roots.

Rodriguez RE, Ercoli MF, Debernardi JM, Breakfield NW, Mecchia MA, Sabatini M, Cools T, De Veylder L, Benfey PN, Palatnik JF.

Plant Cell. 2015 Dec;27(12):3354-66. doi: 10.1105/tpc.15.00452. Epub 2015 Dec 8.

12.

Structural determinants of Arabidopsis thaliana Hyponastic leaves 1 function in vivo.

Burdisso P, Milia F, Schapire AL, Bologna NG, Palatnik JF, Rasia RM.

PLoS One. 2014 Nov 19;9(11):e113243. doi: 10.1371/journal.pone.0113243. eCollection 2014.

13.

Repression of cell proliferation by miR319-regulated TCP4.

Schommer C, Debernardi JM, Bresso EG, Rodriguez RE, Palatnik JF.

Mol Plant. 2014 Oct;7(10):1533-44. doi: 10.1093/mp/ssu084. Epub 2014 Jul 22.

14.

Morphogenesis of simple leaves: regulation of leaf size and shape.

Rodriguez RE, Debernardi JM, Palatnik JF.

Wiley Interdiscip Rev Dev Biol. 2014 Jan-Feb;3(1):41-57. doi: 10.1002/wdev.115. Epub 2013 Apr 18. Review.

PMID:
24902833
15.

Post-transcriptional control of GRF transcription factors by microRNA miR396 and GIF co-activator affects leaf size and longevity.

Debernardi JM, Mecchia MA, Vercruyssen L, Smaczniak C, Kaufmann K, Inze D, Rodriguez RE, Palatnik JF.

Plant J. 2014 Aug;79(3):413-26. doi: 10.1111/tpj.12567. Epub 2014 Jul 2.

16.

Reprint of: construction of Specific Parallel Amplification of RNA Ends (SPARE) libraries for the systematic identification of plant microRNA processing intermediates.

Schapire AL, Bologna NG, Moro B, Zhai J, Meyers BC, Palatnik JF.

Methods. 2014 May 1;67(1):36-44. doi: 10.1016/j.ymeth.2014.04.001. Epub 2014 Apr 13.

PMID:
24731939
17.

comTAR: a web tool for the prediction and characterization of conserved microRNA targets in plants.

Chorostecki U, Palatnik JF.

Bioinformatics. 2014 Jul 15;30(14):2066-7. doi: 10.1093/bioinformatics/btu147. Epub 2014 Mar 14.

PMID:
24632500
18.

Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development.

Pajoro A, Madrigal P, Muiño JM, Matus JT, Jin J, Mecchia MA, Debernardi JM, Palatnik JF, Balazadeh S, Arif M, Ó'Maoiléidigh DS, Wellmer F, Krajewski P, Riechmann JL, Angenent GC, Kaufmann K.

Genome Biol. 2014 Mar 3;15(3):R41. doi: 10.1186/gb-2014-15-3-r41.

19.

Alteration of the microRNA-122 regulatory network in rat models of hepatotoxicity.

Lardizábal MN, Rodríguez RE, Nocito AL, Daniele SM, Palatnik JF, Veggi LM.

Environ Toxicol Pharmacol. 2014 Jan;37(1):354-64. doi: 10.1016/j.etap.2013.12.008. Epub 2013 Dec 22.

PMID:
24388909
20.

Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.

Casadevall R, Rodriguez RE, Debernardi JM, Palatnik JF, Casati P.

Plant Cell. 2013 Sep;25(9):3570-83. doi: 10.1105/tpc.113.117473. Epub 2013 Sep 27.

21.

Construction of Specific Parallel Amplification of RNA Ends (SPARE) libraries for the systematic identification of plant microRNA processing intermediates.

Schapire AL, Bologna NG, Moro B, Zhai J, Meyers BC, Palatnik JF.

Methods. 2013 Dec 15;64(3):283-91. doi: 10.1016/j.ymeth.2013.08.032. Epub 2013 Sep 7.

PMID:
24018204
22.

Multiple RNA recognition patterns during microRNA biogenesis in plants.

Bologna NG, Schapire AL, Zhai J, Chorostecki U, Boisbouvier J, Meyers BC, Palatnik JF.

Genome Res. 2013 Oct;23(10):1675-89. doi: 10.1101/gr.153387.112. Epub 2013 Aug 29.

23.

Second double-stranded RNA binding domain of dicer-like ribonuclease 1: structural and biochemical characterization.

Burdisso P, Suarez IP, Bologna NG, Palatnik JF, Bersch B, Rasia RM.

Biochemistry. 2012 Dec 21;51(51):10159-66. doi: 10.1021/bi301247r. Epub 2012 Dec 12.

PMID:
23194006
24.

Processing of plant microRNA precursors.

Bologna NG, Schapire AL, Palatnik JF.

Brief Funct Genomics. 2013 Jan;12(1):37-45. doi: 10.1093/bfgp/els050. Epub 2012 Nov 11. Review.

PMID:
23148323
25.

MicroRNA miR396 and RDR6 synergistically regulate leaf development.

Mecchia MA, Debernardi JM, Rodriguez RE, Schommer C, Palatnik JF.

Mech Dev. 2013 Jan;130(1):2-13. doi: 10.1016/j.mod.2012.07.005. Epub 2012 Aug 4.

26.

Identification of new microRNA-regulated genes by conserved targeting in plant species.

Chorostecki U, Crosa VA, Lodeyro AF, Bologna NG, Martin AP, Carrillo N, Schommer C, Palatnik JF.

Nucleic Acids Res. 2012 Oct;40(18):8893-904. doi: 10.1093/nar/gks625. Epub 2012 Jul 5.

27.

Reference genes for real-time PCR quantification of microRNAs and messenger RNAs in rat models of hepatotoxicity.

Lardizábal MN, Nocito AL, Daniele SM, Ornella LA, Palatnik JF, Veggi LM.

PLoS One. 2012;7(5):e36323. doi: 10.1371/journal.pone.0036323. Epub 2012 May 1.

28.

Functional specialization of the plant miR396 regulatory network through distinct microRNA-target interactions.

Debernardi JM, Rodriguez RE, Mecchia MA, Palatnik JF.

PLoS Genet. 2012 Jan;8(1):e1002419. doi: 10.1371/journal.pgen.1002419. Epub 2012 Jan 5.

29.

Rapid measurement of residual dipolar couplings for fast fold elucidation of proteins.

Rasia RM, Lescop E, Palatnik JF, Boisbouvier J, Brutscher B.

J Biomol NMR. 2011 Nov;51(3):369-78. doi: 10.1007/s10858-011-9567-4. Epub 2011 Sep 14.

PMID:
21915680
30.

A mechanistic link between STM and CUC1 during Arabidopsis development.

Spinelli SV, Martin AP, Viola IL, Gonzalez DH, Palatnik JF.

Plant Physiol. 2011 Aug;156(4):1894-904. doi: 10.1104/pp.111.177709. Epub 2011 Jun 17.

31.

Plants contain two SCO proteins that are differentially involved in cytochrome c oxidase function and copper and redox homeostasis.

Attallah CV, Welchen E, Martin AP, Spinelli SV, Bonnard G, Palatnik JF, Gonzalez DH.

J Exp Bot. 2011 Aug;62(12):4281-94. doi: 10.1093/jxb/err138. Epub 2011 May 4.

PMID:
21543521
32.

Structure and RNA interactions of the plant MicroRNA processing-associated protein HYL1.

Rasia RM, Mateos J, Bologna NG, Burdisso P, Imbert L, Palatnik JF, Boisbouvier J.

Biochemistry. 2010 Sep 28;49(38):8237-9. doi: 10.1021/bi100672x.

PMID:
20735118
33.

Control of cell proliferation in Arabidopsis thaliana by microRNA miR396.

Rodriguez RE, Mecchia MA, Debernardi JM, Schommer C, Weigel D, Palatnik JF.

Development. 2010 Jan;137(1):103-12. doi: 10.1242/dev.043067.

34.

Identification of microRNA processing determinants by random mutagenesis of Arabidopsis MIR172a precursor.

Mateos JL, Bologna NG, Chorostecki U, Palatnik JF.

Curr Biol. 2010 Jan 12;20(1):49-54. doi: 10.1016/j.cub.2009.10.072. Epub 2009 Dec 10.

35.

A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159.

Bologna NG, Mateos JL, Bresso EG, Palatnik JF.

EMBO J. 2009 Dec 2;28(23):3646-56. doi: 10.1038/emboj.2009.292. Epub 2009 Oct 8.

36.

Parallel screening and optimization of protein constructs for structural studies.

Rasia RM, Noirclerc-Savoye M, Bologna NG, Gallet B, Plevin MJ, Blanchard L, Palatnik JF, Brutscher B, Vernet T, Boisbouvier J.

Protein Sci. 2009 Feb;18(2):434-9. doi: 10.1002/pro.46.

37.

Control of jasmonate biosynthesis and senescence by miR319 targets.

Schommer C, Palatnik JF, Aggarwal P, Chételat A, Cubas P, Farmer EE, Nath U, Weigel D.

PLoS Biol. 2008 Sep 23;6(9):e230. doi: 10.1371/journal.pbio.0060230.

38.

Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319.

Palatnik JF, Wollmann H, Schommer C, Schwab R, Boisbouvier J, Rodriguez R, Warthmann N, Allen E, Dezulian T, Huson D, Carrington JC, Weigel D.

Dev Cell. 2007 Jul;13(1):115-25.

39.

Transgenic tobacco plants overexpressing chloroplastic ferredoxin-NADP(H) reductase display normal rates of photosynthesis and increased tolerance to oxidative stress.

Rodriguez RE, Lodeyro A, Poli HO, Zurbriggen M, Peisker M, Palatnik JF, Tognetti VB, Tschiersch H, Hajirezaei MR, Valle EM, Carrillo N.

Plant Physiol. 2007 Feb;143(2):639-49. Epub 2006 Dec 22.

40.

Functional replacement of ferredoxin by a cyanobacterial flavodoxin in tobacco confers broad-range stress tolerance.

Tognetti VB, Palatnik JF, Fillat MF, Melzer M, Hajirezaei MR, Valle EM, Carrillo N.

Plant Cell. 2006 Aug;18(8):2035-50. Epub 2006 Jul 7.

41.

Identification of plant microRNA homologs.

Dezulian T, Remmert M, Palatnik JF, Weigel D, Huson DH.

Bioinformatics. 2006 Feb 1;22(3):359-60. Epub 2005 Nov 29.

PMID:
16317073
42.

Specific effects of microRNAs on the plant transcriptome.

Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M, Weigel D.

Dev Cell. 2005 Apr;8(4):517-27.

43.

Control of leaf morphogenesis by microRNAs.

Palatnik JF, Allen E, Wu X, Schommer C, Schwab R, Carrington JC, Weigel D.

Nature. 2003 Sep 18;425(6955):257-63. Epub 2003 Aug 20.

44.

Transgenic tobacco plants expressing antisense ferredoxin-NADP(H) reductase transcripts display increased susceptibility to photo-oxidative damage.

Palatnik JF, Tognetti VB, Poli HO, Rodríguez RE, Blanco N, Gattuso M, Hajirezaei MR, Sonnewald U, Valle EM, Carrillo N.

Plant J. 2003 Aug;35(3):332-41.

45.

The flavoenzyme ferredoxin (flavodoxin)-NADP(H) reductase modulates NADP(H) homeostasis during the soxRS response of Escherichia coli.

Krapp AR, Rodriguez RE, Poli HO, Paladini DH, Palatnik JF, Carrillo N.

J Bacteriol. 2002 Mar;184(5):1474-80.

46.

Small changes in the activity of chloroplastic NADP(+)-dependent ferredoxin oxidoreductase lead to impaired plant growth and restrict photosynthetic activity of transgenic tobacco plants.

Hajirezaei MR, Peisker M, Tschiersch H, Palatnik JF, Valle EM, Carrillo N, Sonnewald U.

Plant J. 2002 Feb;29(3):281-93. Erratum in: Plant J 2002 Apr;30(2):259.

47.

Changes in amino acid composition and nitrogen metabolizing enzymes in ripening fruits of Lycopersicon esculentum Mill.

Boggio SB, Palatnik JF, Heldt HW, Valle EM.

Plant Sci. 2000 Oct 16;159(1):125-133.

PMID:
11011100
48.
49.

Identification of mRNA-binding proteins during development: characterization of Bufo arenarum cellular nucleic acid binding protein.

Calcaterra NB, Palatnik JF, Bustos DM, Arranz SE, Cabada MO.

Dev Growth Differ. 1999 Apr;41(2):183-91.

PMID:
10223714
50.

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