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Items: 16

1.

Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk.

Reshef YA, Finucane HK, Kelley DR, Gusev A, Kotliar D, Ulirsch JC, Hormozdiari F, Nasser J, O'Connor L, van de Geijn B, Loh PR, Grossman SR, Bhatia G, Gazal S, Palamara PF, Pinello L, Patterson N, Adams RP, Price AL.

Nat Genet. 2018 Oct;50(10):1483-1493. doi: 10.1038/s41588-018-0196-7. Epub 2018 Sep 3.

PMID:
30177862
2.

High-throughput inference of pairwise coalescence times identifies signals of selection and enriched disease heritability.

Palamara PF, Terhorst J, Song YS, Price AL.

Nat Genet. 2018 Sep;50(9):1311-1317. doi: 10.1038/s41588-018-0177-x. Epub 2018 Aug 13.

PMID:
30104759
3.

Insights into clonal haematopoiesis from 8,342 mosaic chromosomal alterations.

Loh PR, Genovese G, Handsaker RE, Finucane HK, Reshef YA, Palamara PF, Birmann BM, Talkowski ME, Bakhoum SF, McCarroll SA, Price AL.

Nature. 2018 Jul;559(7714):350-355. doi: 10.1038/s41586-018-0321-x. Epub 2018 Jul 11.

PMID:
29995854
4.

Linkage disequilibrium-dependent architecture of human complex traits shows action of negative selection.

Gazal S, Finucane HK, Furlotte NA, Loh PR, Palamara PF, Liu X, Schoech A, Bulik-Sullivan B, Neale BM, Gusev A, Price AL.

Nat Genet. 2017 Oct;49(10):1421-1427. doi: 10.1038/ng.3954. Epub 2017 Sep 11.

5.

Reference-based phasing using the Haplotype Reference Consortium panel.

Loh PR, Danecek P, Palamara PF, Fuchsberger C, A Reshef Y, K Finucane H, Schoenherr S, Forer L, McCarthy S, Abecasis GR, Durbin R, L Price A.

Nat Genet. 2016 Nov;48(11):1443-1448. doi: 10.1038/ng.3679. Epub 2016 Oct 3.

6.

ARGON: fast, whole-genome simulation of the discrete time Wright-fisher process.

Palamara PF.

Bioinformatics. 2016 Oct 1;32(19):3032-4. doi: 10.1093/bioinformatics/btw355. Epub 2016 Jun 16.

7.

Fast and accurate long-range phasing in a UK Biobank cohort.

Loh PR, Palamara PF, Price AL.

Nat Genet. 2016 Jul;48(7):811-6. doi: 10.1038/ng.3571. Epub 2016 Jun 6.

8.

Leveraging Distant Relatedness to Quantify Human Mutation and Gene-Conversion Rates.

Palamara PF, Francioli LC, Wilton PR, Genovese G, Gusev A, Finucane HK, Sankararaman S; Genome of the Netherlands Consortium, Sunyaev SR, de Bakker PI, Wakeley J, Pe'er I, Price AL.

Am J Hum Genet. 2015 Dec 3;97(6):775-89. doi: 10.1016/j.ajhg.2015.10.006. Epub 2015 Nov 12.

9.

Inference of historical migration rates via haplotype sharing.

Palamara PF, Pe'er I.

Bioinformatics. 2013 Jul 1;29(13):i180-8. doi: 10.1093/bioinformatics/btt239.

10.

The variance of identity-by-descent sharing in the Wright-Fisher model.

Carmi S, Palamara PF, Vacic V, Lencz T, Darvasi A, Pe'er I.

Genetics. 2013 Mar;193(3):911-28. doi: 10.1534/genetics.112.147215. Epub 2012 Dec 24.

11.

Length distributions of identity by descent reveal fine-scale demographic history.

Palamara PF, Lencz T, Darvasi A, Pe'er I.

Am J Hum Genet. 2012 Nov 2;91(5):809-22. doi: 10.1016/j.ajhg.2012.08.030. Epub 2012 Oct 25. Erratum in: Am J Hum Genet. 2012 Dec 7;91(6):1150.

12.

North African Jewish and non-Jewish populations form distinctive, orthogonal clusters.

Campbell CL, Palamara PF, Dubrovsky M, Botigué LR, Fellous M, Atzmon G, Oddoux C, Pearlman A, Hao L, Henn BM, Burns E, Bustamante CD, Comas D, Friedman E, Pe'er I, Ostrer H.

Proc Natl Acad Sci U S A. 2012 Aug 21;109(34):13865-70. doi: 10.1073/pnas.1204840109. Epub 2012 Aug 6.

13.

The architecture of long-range haplotypes shared within and across populations.

Gusev A, Palamara PF, Aponte G, Zhuang Z, Darvasi A, Gregersen P, Pe'er I.

Mol Biol Evol. 2012 Feb;29(2):473-86. doi: 10.1093/molbev/msr133. Epub 2011 Oct 6.

14.

The impact of Converso Jews on the genomes of modern Latin Americans.

Velez C, Palamara PF, Guevara-Aguirre J, Hao L, Karafet T, Guevara-Aguirre M, Pearlman A, Oddoux C, Hammer M, Burns E, Pe'er I, Atzmon G, Ostrer H.

Hum Genet. 2012 Feb;131(2):251-63. doi: 10.1007/s00439-011-1072-z. Epub 2011 Jul 26.

PMID:
21789512
15.

A minimal descriptor of an ancestral recombinations graph.

Parida L, Palamara PF, Javed A.

BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S6. doi: 10.1186/1471-2105-12-S1-S6.

16.

Abraham's children in the genome era: major Jewish diaspora populations comprise distinct genetic clusters with shared Middle Eastern Ancestry.

Atzmon G, Hao L, Pe'er I, Velez C, Pearlman A, Palamara PF, Morrow B, Friedman E, Oddoux C, Burns E, Ostrer H.

Am J Hum Genet. 2010 Jun 11;86(6):850-9.

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