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Items: 38

1.

Bayesian Estimation of Population Size Changes by Sampling Tajima's Trees.

Palacios JA, Véber A, Cappello L, Wang Z, Wakeley J, Ramachandran S.

Genetics. 2019 Sep 11. pii: genetics.302373.2019. doi: 10.1534/genetics.119.302373. [Epub ahead of print]

2.

Exact limits of inference in coalescent models.

Johndrow JE, Palacios JA.

Theor Popul Biol. 2019 Feb;125:75-93. doi: 10.1016/j.tpb.2018.11.004. Epub 2018 Dec 17.

3.

No Evidence for Recent Selection at FOXP2 among Diverse Human Populations.

Atkinson EG, Audesse AJ, Palacios JA, Bobo DM, Webb AE, Ramachandran S, Henn BM.

Cell. 2018 Sep 6;174(6):1424-1435.e15. doi: 10.1016/j.cell.2018.06.048. Epub 2018 Aug 2.

4.

Understanding heart rate alarm adjustment in the intensive care units through an analytical approach.

Fidler RL, Pelter MM, Drew BJ, Palacios JA, Bai Y, Stannard D, Aldrich JM, Hu X.

PLoS One. 2017 Nov 27;12(11):e0187855. doi: 10.1371/journal.pone.0187855. eCollection 2017.

5.

Short implants versus bone grafting and standard-length implants placement: a systematic review.

Palacios JAV, Garcia JJ, Caramês JMM, Quirynen M, da Silva Marques DN.

Clin Oral Investig. 2018 Jan;22(1):69-80. doi: 10.1007/s00784-017-2205-0. Epub 2017 Oct 6. Review.

PMID:
28986692
6.

phylodyn: an R package for phylodynamic simulation and inference.

Karcher MD, Palacios JA, Lan S, Minin VN.

Mol Ecol Resour. 2017 Jan;17(1):96-100. doi: 10.1111/1755-0998.12630. Epub 2016 Nov 21.

7.

Is the Sequence of SuperAlarm Triggers More Predictive Than Sequence of the Currently Utilized Patient Monitor Alarms?

Bai Y, Do D, Ding Q, Palacios JA, Shahriari Y, Pelter MM, Boyle N, Fidler R, Hu X.

IEEE Trans Biomed Eng. 2017 May;64(5):1023-1032. doi: 10.1109/TBME.2016.2586443. Epub 2016 Jun 30.

8.

Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference.

Karcher MD, Palacios JA, Bedford T, Suchard MA, Minin VN.

PLoS Comput Biol. 2016 Mar 3;12(3):e1004789. doi: 10.1371/journal.pcbi.1004789. eCollection 2016 Mar.

9.

Bayesian Nonparametric Inference of Population Size Changes from Sequential Genealogies.

Palacios JA, Wakeley J, Ramachandran S.

Genetics. 2015 Sep;201(1):281-304. doi: 10.1534/genetics.115.177980. Epub 2015 Jul 28.

10.

An efficient Bayesian inference framework for coalescent-based nonparametric phylodynamics.

Lan S, Palacios JA, Karcher M, Minin VN, Shahbaba B.

Bioinformatics. 2015 Oct 15;31(20):3282-9. doi: 10.1093/bioinformatics/btv378. Epub 2015 Jun 20.

11.

TopoIIα prevents telomere fragility and formation of ultra thin DNA bridges during mitosis through TRF1-dependent binding to telomeres.

d'Alcontres MS, Palacios JA, Mejias D, Blasco MA.

Cell Cycle. 2014;13(9):1463-81. doi: 10.4161/cc.28419. Epub 2014 Mar 10.

12.

TRF1 is a stem cell marker and is essential for the generation of induced pluripotent stem cells.

Schneider RP, Garrobo I, Foronda M, Palacios JA, Marión RM, Flores I, Ortega S, Blasco MA.

Nat Commun. 2013;4:1946. doi: 10.1038/ncomms2946. Erratum in: Nat Commun. 2013;4:2309.

PMID:
23735977
13.

Gaussian process-based Bayesian nonparametric inference of population size trajectories from gene genealogies.

Palacios JA, Minin VN.

Biometrics. 2013 Mar;69(1):8-18. doi: 10.1111/biom.12003. Epub 2013 Feb 14.

PMID:
23409705
14.

Heart to heart: grafting cardiosphere-derived cells augments cardiac self-repair by both myocytes and stem cells.

Palacios JA, Schneider MD.

EMBO Mol Med. 2013 Feb;5(2):177-9. doi: 10.1002/emmm.201202345. No abstract available.

15.

Long-term nonprogressor and elite controller patients who control viremia have a higher percentage of methylation in their HIV-1 proviral promoters than aviremic patients receiving highly active antiretroviral therapy.

Palacios JA, Pérez-Piñar T, Toro C, Sanz-Minguela B, Moreno V, Valencia E, Gómez-Hernando C, Rodés B.

J Virol. 2012 Dec;86(23):13081-4. doi: 10.1128/JVI.01741-12. Epub 2012 Sep 12.

16.

SIRT1 contributes to telomere maintenance and augments global homologous recombination.

Palacios JA, Herranz D, De Bonis ML, Velasco S, Serrano M, Blasco MA.

J Cell Biol. 2010 Dec 27;191(7):1299-313. doi: 10.1083/jcb.201005160.

17.

[Reproduction and growth of the fish Lutjanus guttatus (Pisces: Lutjanidae) in the Gulf of Nicoya, Costa Rica].

Rojas RL, Mejía-Arana F, Palacios JA, Hiramatsu K.

Rev Biol Trop. 2009 Mar-Jun;57(1-2):125-31. Spanish.

PMID:
19637694
18.

Processing of recombinant AAV genomes occurs in specific nuclear structures that overlap with foci of DNA-damage-response proteins.

Cervelli T, Palacios JA, Zentilin L, Mano M, Schwartz RA, Weitzman MD, Giacca M.

J Cell Sci. 2008 Feb 1;121(Pt 3):349-57. doi: 10.1242/jcs.003632.

19.

The Mre11/Rad50/Nbs1 complex limits adeno-associated virus transduction and replication.

Schwartz RA, Palacios JA, Cassell GD, Adam S, Giacca M, Weitzman MD.

J Virol. 2007 Dec;81(23):12936-45. Epub 2007 Sep 26.

20.

Enhancement of human immunodeficiency virus type 1 infectivity by replacing the region including Env derived from defective particles with an ability to form particle-mediated syncytia in CD4+T cells.

Kinomoto M, Mukai T, Li YG, Iwabu Y, Warachit J, Palacios JA, Ibrahim MS, Tsuji S, Goto T, Ikuta K.

Microbes Infect. 2004 Aug;6(10):911-8.

PMID:
15310467
21.

Effects of birthplace and individual genetic admixture on lung volume and exercise phenotypes of Peruvian Quechua.

Brutsaert TD, Parra E, Shriver M, Gamboa A, Palacios JA, Rivera M, Rodriguez I, León-Velarde F.

Am J Phys Anthropol. 2004 Apr;123(4):390-8.

PMID:
15022366
22.

Comparison of the performance of the Gea extracorporeal knot with the Roeder extracorporeal knot and the classical knot.

Moreno M, Magos FJ, Arcovedo R, Olachea P, Palacios JA, Salazar A, Ramírez ME, Herrera JJ.

Surg Endosc. 2004 Jan;18(1):157-60. Epub 2003 Nov 21.

PMID:
14625747
23.

Spanish genetic admixture is associated with larger V(O2) max decrement from sea level to 4338 m in Peruvian Quechua.

Brutsaert TD, Parra EJ, Shriver MD, Gamboa A, Palacios JA, Rivera M, Rodriguez I, León-Velarde F.

J Appl Physiol (1985). 2003 Aug;95(2):519-28. Epub 2003 Apr 11.

24.

Selected contribution: Ventilatory response to CO2 in high-altitude natives and patients with chronic mountain sickness.

Fatemian M, Gamboa A, Léon-Velarde F, Rivera-Ch M, Palacios JA, Robbins PA.

J Appl Physiol (1985). 2003 Mar;94(3):1279-87; discussion 1253-4. Epub 2002 Nov 27.

25.

Selected contribution: Peripheral chemoreflex function in high-altitude natives and patients with chronic mountain sickness.

Léon-Velarde F, Gamboa A, Rivera-Ch M, Palacios JA, Robbins PA.

J Appl Physiol (1985). 2003 Mar;94(3):1269-78; discussion 1253-4. Epub 2002 Nov 27.

26.

Selected contribution: High-altitude natives living at sea level acclimatize to high altitude like sea-level natives.

Rivera-Ch M, Gamboa A, Léon-Velarde F, Palacios JA, O'Connor DF, Robbins PA.

J Appl Physiol (1985). 2003 Mar;94(3):1263-8; discussion 1253-4. Epub 2002 Nov 27.

27.

Selected contribution: Acute and sustained ventilatory responses to hypoxia in high-altitude natives living at sea level.

Gamboa A, Léon-Velarde F, Rivera-Ch M, Palacios JA, Pragnell TR, O'Connor DF, Robbins PA.

J Appl Physiol (1985). 2003 Mar;94(3):1255-62; discussion 1253-4. Epub 2002 Nov 27.

28.

Construction and characterization of an infectious molecular clone derived from the CRF01_AE primary isolate of HIV type 1.

Mukai T, Komoto S, Kurosu T, Palacios JA, Li YG, Auwanit W, Tatsumi M, Ikuta K.

AIDS Res Hum Retroviruses. 2002 May 20;18(8):585-9.

PMID:
12036488
29.

Varied persistent life cycles of Borna disease virus in a human oligodendroglioma cell line.

Ibrahim MS, Watanabe M, Palacios JA, Kamitani W, Komoto S, Kobayashi T, Tomonaga K, Ikuta K.

J Virol. 2002 Apr;76(8):3873-80.

30.

Ventilatory and cardiovascular responses to hypoxia and exercise in Andean natives living at sea level.

Gamboa A, León-Velarde F, Rivera-Ch M, Vargas M, Palacios JA, Monge-C C.

High Alt Med Biol. 2001 Fall;2(3):341-7.

PMID:
11682013
31.

Arthroscopic extirpation of an osteoid osteoma of the acetabulum.

Alvarez MS, Moneo PR, Palacios JA.

Arthroscopy. 2001 Sep;17(7):768-71.

PMID:
11536099
32.

Inter and intra-species-related differences in the regulation of the cardiac autonomic system.

León-Velarde F, Richalet JP, Chavez JC, Kacimi R, Rivera-Chira M, Palacios JA, Clark D.

Comp Biochem Physiol B Biochem Mol Biol. 1998 Apr;119(4):819-23.

PMID:
9787772
33.

Similar hypoxic ventilatory responses in sea-level natives and high-altitude Andean natives living at sea level.

Vargas M, León-Velarde F, Monge-C C, Palacios JA, Robbins PA.

J Appl Physiol (1985). 1998 Mar;84(3):1024-9.

34.

Changes in whole blood oxygen affinity and eggshell permeability in high altitude chickens translocated to sea level.

León-Velarde F, Mejía O, Palacios JA, Monge C.

Comp Biochem Physiol B Biochem Mol Biol. 1997 Sep;118(1):53-7.

PMID:
9417992
35.

Hypoxia- and normoxia-induced reversibility of autonomic control in Andean guinea pig heart.

León-Velarde F, Richalet JP, Chavez JC, Kacimi R, Rivera-Chira M, Palacios JA, Clark D.

J Appl Physiol (1985). 1996 Nov;81(5):2229-34.

36.

Hemoglobin affinity and structure in high-altitude and sea-level carnivores from Peru.

León-Velarde F, de Muizon C, Palacios JA, Clark D, Monge C.

Comp Biochem Physiol A Physiol. 1996 Apr;113(4):407-11.

PMID:
8689525
37.

Mucocutaneous and soft tissue infections caused by Xanthomonas maltophilia. A new spectrum.

Vartivarian SE, Papadakis KA, Palacios JA, Manning JT Jr, Anaissie EJ.

Ann Intern Med. 1994 Dec 15;121(12):969-73.

PMID:
7978724
38.

[Endoscopic resolution of acute dilatation of the colon secondary to edema of colonic anastomosis].

Farca Belsaguy A, Presenda F, Palacios JA, Mundo Gallardo F, Rodríguez G, Ramírez-Varela A.

Rev Gastroenterol Mex. 1992 Oct-Dec;57(4):246-7. Spanish.

PMID:
1308307

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