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Items: 1 to 50 of 209

1.

Nanomagnetic Logic Design Approach for Area and Speed Efficient Adder using Ferromagnetically Coupled Fixed-Input Majority Gate.

Sivasubramani S, Mattella V, Pal C, Acharyya A.

Nanotechnology. 2019 Jun 12. doi: 10.1088/1361-6528/ab295a. [Epub ahead of print]

PMID:
31189145
2.

Limited evolutionary conservation of the phenotypic effects of antibiotic resistance mutations.

Apjok G, Boross G, Nyerges Á, Fekete G, Lázár V, Papp B, Pál C, Csörgő B.

Mol Biol Evol. 2019 May 6. pii: msz109. doi: 10.1093/molbev/msz109. [Epub ahead of print]

PMID:
31058961
3.

CRISPR-interference-based modulation of mobile genetic elements in bacteria.

Nyerges Á, Bálint B, Cseklye J, Nagy I, Pál C, Fehér T.

Synth Biol (Oxf). 2019;4(1):ysz008. doi: 10.1093/synbio/ysz008. Epub 2019 Mar 15.

4.

Enzyme promiscuity shapes adaptation to novel growth substrates.

Guzmán GI, Sandberg TE, LaCroix RA, Nyerges Á, Papp H, de Raad M, King ZA, Hefner Y, Northen TR, Notebaart RA, Pál C, Palsson BO, Papp B, Feist AM.

Mol Syst Biol. 2019 Apr 8;15(4):e8462. doi: 10.15252/msb.20188462.

5.

Evolthon: A community endeavor to evolve lab evolution.

Kaminski Strauss S, Schirman D, Jona G, Brooks AN, Kunjapur AM, Nguyen Ba AN, Flint A, Solt A, Mershin A, Dixit A, Yona AH, Csörgő B, Busby BP, Hennig BP, Pál C, Schraivogel D, Schultz D, Wernick DG, Agashe D, Levi D, Zabezhinsky D, Russ D, Sass E, Tamar E, Herz E, Levy ED, Church GM, Yelin I, Nachman I, Gerst JE, Georgeson JM, Adamala KP, Steinmetz LM, Rübsam M, Ralser M, Klutstein M, Desai MM, Walunjkar N, Yin N, Aharon Hefetz N, Jakimo N, Snitser O, Adini O, Kumar P, Soo Hoo Smith R, Zeidan R, Hazan R, Rak R, Kishony R, Johnson S, Nouriel S, Vonesch SC, Foster S, Dagan T, Wein T, Karydis T, Wannier TM, Stiles T, Olin-Sandoval V, Mueller WF, Bar-On YM, Dahan O, Pilpel Y.

PLoS Biol. 2019 Mar 29;17(3):e3000182. doi: 10.1371/journal.pbio.3000182. eCollection 2019 Mar.

6.

An optimised series of substituted N-phenylpyrrolamides as DNA gyrase B inhibitors.

Tiz DB, Skok Ž, Durcik M, Tomašič T, Mašič LP, Ilaš J, Zega A, Draskovits G, Révész T, Nyerges Á, Pál C, Cruz CD, Tammela P, Žigon D, Kikelj D, Zidar N.

Eur J Med Chem. 2019 Apr 1;167:269-290. doi: 10.1016/j.ejmech.2019.02.004. Epub 2019 Feb 10.

PMID:
30776691
7.

Dual Action of the PN159/KLAL/MAP Peptide: Increase of Drug Penetration across Caco-2 Intestinal Barrier Model by Modulation of Tight Junctions and Plasma Membrane Permeability.

Bocsik A, Gróf I, Kiss L, Ötvös F, Zsíros O, Daruka L, Fülöp L, Vastag M, Kittel Á, Imre N, Martinek TA, Pál C, Szabó-Révész P, Deli MA.

Pharmaceutics. 2019 Feb 10;11(2). pii: E73. doi: 10.3390/pharmaceutics11020073.

8.

Pathogen diversity drives the evolution of generalist MHC-II alleles in human populations.

Manczinger M, Boross G, Kemény L, Müller V, Lenz TL, Papp B, Pál C.

PLoS Biol. 2019 Jan 31;17(1):e3000131. doi: 10.1371/journal.pbio.3000131. eCollection 2019 Jan.

9.

Phylogenetic barriers to horizontal transfer of antimicrobial peptide resistance genes in the human gut microbiota.

Kintses B, Méhi O, Ari E, Számel M, Györkei Á, Jangir PK, Nagy I, Pál F, Fekete G, Tengölics R, Nyerges Á, Likó I, Bálint A, Molnár T, Bálint B, Vásárhelyi BM, Bustamante M, Papp B, Pál C.

Nat Microbiol. 2019 Mar;4(3):447-458. doi: 10.1038/s41564-018-0313-5. Epub 2018 Dec 17.

10.

A Rare Culprit of Spontaneous Abortion, Latent Tuberculosis Complicated by Disseminated Peritoneal TB.

Sossou C, Pal C, Bustillo JR.

Case Rep Infect Dis. 2018 Oct 28;2018:2318539. doi: 10.1155/2018/2318539. eCollection 2018.

11.

Visible transparent white light emitting ink from a Ce3+ sensitized monodispersed Tb,Sm co-doped LaF3@C-dot nanocomposite.

Ghosh S, Pal C, Paul S, Saha M, Barman D, De SK.

Chem Commun (Camb). 2018 Dec 13;54(100):14124-14127. doi: 10.1039/c8cc07423b.

PMID:
30499998
12.

Deep eutectic solvent-based extraction of polyphenolic antioxidants from onion (Allium cepa L.) peel.

Pal CBT, Jadeja GC.

J Sci Food Agric. 2019 Mar 15;99(4):1969-1979. doi: 10.1002/jsfa.9395. Epub 2018 Nov 12.

PMID:
30270562
13.

Studies on sugar puckering and glycosidic stabilities of 3'-amino-5'-carboxymethyl-3',5'-dideoxy nucleoside mimics.

Pal C, Velusamy A, Sunkari YK, Chakraborty TK.

Org Biomol Chem. 2018 Sep 19;16(36):6735-6740. doi: 10.1039/c8ob01788c.

PMID:
30187064
14.

Data-driven approach to Early Warning Score-based alert management.

Capan M, Hoover S, Miller KE, Pal C, Glasgow JM, Jackson EV, Arnold RC.

BMJ Open Qual. 2018 Aug 10;7(3):e000088. doi: 10.1136/bmjoq-2017-000088. eCollection 2018.

15.

Selective in vitro inhibition of Leishmania donovani by a semi-purified fraction of wild mushroom Grifola frondosa.

Sultana SS, Ghosh J, Chakraborty S, Mukherjee D, Dey S, Mallick S, Dutta A, Paloi S, Khatua S, Dutta T, Bhattacharya S, Acharya K, Ghorai N, Pal C.

Exp Parasitol. 2018 Sep;192:73-84. doi: 10.1016/j.exppara.2018.07.006. Epub 2018 Jul 21.

PMID:
30040961
16.

Directed evolution of multiple genomic loci allows the prediction of antibiotic resistance.

Nyerges Á, Csörgő B, Draskovits G, Kintses B, Szili P, Ferenc G, Révész T, Ari E, Nagy I, Bálint B, Vásárhelyi BM, Bihari P, Számel M, Balogh D, Papp H, Kalapis D, Papp B, Pál C.

Proc Natl Acad Sci U S A. 2018 Jun 19;115(25):E5726-E5735. doi: 10.1073/pnas.1801646115. Epub 2018 Jun 5.

17.

Antibiotic-resistant bacteria show widespread collateral sensitivity to antimicrobial peptides.

Lázár V, Martins A, Spohn R, Daruka L, Grézal G, Fekete G, Számel M, Jangir PK, Kintses B, Csörgő B, Nyerges Á, Györkei Á, Kincses A, Dér A, Walter FR, Deli MA, Urbán E, Hegedűs Z, Olajos G, Méhi O, Bálint B, Nagy I, Martinek TA, Papp B, Pál C.

Nat Microbiol. 2018 Jun;3(6):718-731. doi: 10.1038/s41564-018-0164-0. Epub 2018 May 24.

18.

New N-phenylpyrrolamide DNA gyrase B inhibitors: Optimization of efficacy and antibacterial activity.

Durcik M, Lovison D, Skok Ž, Durante Cruz C, Tammela P, Tomašič T, Benedetto Tiz D, Draskovits G, Nyerges Á, Pál C, Ilaš J, Peterlin Mašič L, Kikelj D, Zidar N.

Eur J Med Chem. 2018 Jun 25;154:117-132. doi: 10.1016/j.ejmech.2018.05.011. Epub 2018 May 10.

19.

Improvement of injury severity prediction (ISP) of AACN during on-site triage using vehicle deformation pattern for car-to-car (C2C) side impacts.

Pal C, Hirayama S, Narahari S, Jeyabharath M, Prakash G, Kulothungan V, Combest J.

Traffic Inj Prev. 2018 Feb 28;19(sup1):S201-S204. doi: 10.1080/15389588.2018.1426933.

PMID:
29584509
20.

An insight of World Health Organization (WHO) accident database by cluster analysis with self-organizing map (SOM).

Pal C, Hirayama S, Narahari S, Jeyabharath M, Prakash G, Kulothungan V.

Traffic Inj Prev. 2018 Feb 28;19(sup1):S15-S20. doi: 10.1080/15389588.2017.1370089. Review.

PMID:
29584502
21.

Rate dependent anisotropic constitutive modeling of brain tissue undergoing large deformation.

Haldar K, Pal C.

J Mech Behav Biomed Mater. 2018 May;81:178-194. doi: 10.1016/j.jmbbm.2017.12.021. Epub 2017 Dec 24.

PMID:
29529589
22.

Synthesis and biological evaluation of polyhydroxylated oxindole derivatives as potential antileishmanial agent.

Yousuf M, Mukherjee D, Dey S, Chatterjee S, Pal A, Sarkar B, Pal C, Adhikari S.

Bioorg Med Chem Lett. 2018 Apr 1;28(6):1056-1062. doi: 10.1016/j.bmcl.2018.02.023. Epub 2018 Feb 12.

PMID:
29478704
23.

Cotranslational protein assembly imposes evolutionary constraints on homomeric proteins.

Natan E, Endoh T, Haim-Vilmovsky L, Flock T, Chalancon G, Hopper JTS, Kintses B, Horvath P, Daruka L, Fekete G, Pál C, Papp B, Oszi E, Magyar Z, Marsh JA, Elcock AH, Babu MM, Robinson CV, Sugimoto N, Teichmann SA.

Nat Struct Mol Biol. 2018 Mar;25(3):279-288. doi: 10.1038/s41594-018-0029-5. Epub 2018 Feb 12.

24.

Application of high-throughput pyrosequencing in the analysis of microbiota of food commodities procured from small and large retail outlets in a U.S. metropolitan area - A pilot study.

Higgins D, Pal C, Sulaiman IM, Jia C, Zerwekh T, Dowd SE, Banerjee P.

Food Res Int. 2018 Mar;105:29-40. doi: 10.1016/j.foodres.2017.10.057. Epub 2017 Oct 31.

PMID:
29433218
25.

Hsp70-associated chaperones have a critical role in buffering protein production costs.

Farkas Z, Kalapis D, Bódi Z, Szamecz B, Daraba A, Almási K, Kovács K, Boross G, Pál F, Horváth P, Balassa T, Molnár C, Pettkó-Szandtner A, Klement É, Rutkai E, Szvetnik A, Papp B, Pál C.

Elife. 2018 Jan 29;7. pii: e29845. doi: 10.7554/eLife.29845.

26.

Learning normalized inputs for iterative estimation in medical image segmentation.

Drozdzal M, Chartrand G, Vorontsov E, Shakeri M, Di Jorio L, Tang A, Romero A, Bengio Y, Pal C, Kadoury S.

Med Image Anal. 2018 Feb;44:1-13. doi: 10.1016/j.media.2017.11.005. Epub 2017 Nov 14.

PMID:
29169029
27.

Deep Learning: A Primer for Radiologists.

Chartrand G, Cheng PM, Vorontsov E, Drozdzal M, Turcotte S, Pal CJ, Kadoury S, Tang A.

Radiographics. 2017 Nov-Dec;37(7):2113-2131. doi: 10.1148/rg.2017170077. Review.

PMID:
29131760
28.

A standardized workflow for surveying recombinases expands bacterial genome-editing capabilities.

Ricaurte DE, Martínez-García E, Nyerges Á, Pál C, de Lorenzo V, Aparicio T.

Microb Biotechnol. 2018 Jan;11(1):176-188. doi: 10.1111/1751-7915.12846. Epub 2017 Nov 2.

29.

Evolution of complex adaptations in molecular systems.

Pál C, Papp B.

Nat Ecol Evol. 2017 Aug;1(8):1084-1092. doi: 10.1038/s41559-017-0228-1. Epub 2017 Jul 21.

30.

Untreated urban waste contaminates Indian river sediments with resistance genes to last resort antibiotics.

Marathe NP, Pal C, Gaikwad SS, Jonsson V, Kristiansson E, Larsson DGJ.

Water Res. 2017 Nov 1;124:388-397. doi: 10.1016/j.watres.2017.07.060. Epub 2017 Jul 25.

PMID:
28780361
31.

Correction: Phenotypic heterogeneity promotes adaptive evolution.

Bódi Z, Farkas Z, Nevozhay D, Kalapis D, Lázár V, Csörgő B, Nyerges Á, Szamecz B, Fekete G, Papp B, Araújo H, Oliveira JL, Moura G, Santos MAS, Székely T Jr, Balázsi G, Pál C.

PLoS Biol. 2017 Jun 20;15(6):e1002607. doi: 10.1371/journal.pbio.1002607. eCollection 2017 Jun.

32.

Metal Resistance and Its Association With Antibiotic Resistance.

Pal C, Asiani K, Arya S, Rensing C, Stekel DJ, Larsson DGJ, Hobman JL.

Adv Microb Physiol. 2017;70:261-313. doi: 10.1016/bs.ampbs.2017.02.001. Epub 2017 Apr 3. Review.

PMID:
28528649
33.

Phenotypic heterogeneity promotes adaptive evolution.

Bódi Z, Farkas Z, Nevozhay D, Kalapis D, Lázár V, Csörgő B, Nyerges Á, Szamecz B, Fekete G, Papp B, Araújo H, Oliveira JL, Moura G, Santos MAS, Székely T Jr, Balázsi G, Pál C.

PLoS Biol. 2017 May 9;15(5):e2000644. doi: 10.1371/journal.pbio.2000644. eCollection 2017 May. Erratum in: PLoS Biol. 2017 Jun 20;15(6):e1002607.

34.

Genome-Wide Abolishment of Mobile Genetic Elements Using Genome Shuffling and CRISPR/Cas-Assisted MAGE Allows the Efficient Stabilization of a Bacterial Chassis.

Umenhoffer K, Draskovits G, Nyerges Á, Karcagi I, Bogos B, Tímár E, Csörgő B, Herczeg R, Nagy I, Fehér T, Pál C, Pósfai G.

ACS Synth Biol. 2017 Aug 18;6(8):1471-1483. doi: 10.1021/acssynbio.6b00378. Epub 2017 Apr 26.

PMID:
28426191
35.

Does antifouling paint select for antibiotic resistance?

Flach CF, Pal C, Svensson CJ, Kristiansson E, Östman M, Bengtsson-Palme J, Tysklind M, Larsson DGJ.

Sci Total Environ. 2017 Jul 15;590-591:461-468. doi: 10.1016/j.scitotenv.2017.01.213. Epub 2017 Mar 8.

PMID:
28284638
36.

Single locus genotyping to track Leishmania donovani in the Indian subcontinent: Application in Nepal.

Rai K, Bhattarai NR, Vanaerschot M, Imamura H, Gebru G, Khanal B, Rijal S, Boelaert M, Pal C, Karki P, Dujardin JC, Van der Auwera G.

PLoS Negl Trop Dis. 2017 Mar 1;11(3):e0005420. doi: 10.1371/journal.pntd.0005420. eCollection 2017 Mar.

37.

Bacterial resistance to arsenic protects against protist killing.

Hao X, Li X, Pal C, Hobman J, Larsson DG, Saquib Q, Alwathnani HA, Rosen BP, Zhu YG, Rensing C.

Biometals. 2017 Apr;30(2):307-311. doi: 10.1007/s10534-017-0003-4. Epub 2017 Feb 16.

38.

In vitro screening of calli of mungbean to cercosporin, a photoactivated toxin.

Kumar P, Chand R, Singh V, Pal C.

Indian J Exp Biol. 2017 Feb;55(2):113-21.

PMID:
30184412
39.

Prevalence of vitamin D deficiency in orthopaedic patients - A single centre study.

Pal CP, Kumar H, Kumar D, Mittal V, Deshwar G, Altaf D, Verma S.

J Clin Orthop Trauma. 2016 Oct-Dec;7(Suppl 2):143-146. doi: 10.1016/j.jcot.2016.06.009. Epub 2016 Oct 15.

40.

Recombinant Leishmania Rab6 (rLdRab6) is recognized by sera from visceral leishmaniasis patients.

Chauhan IS, Shukla R, Krishna S, Sekhri S, Kaushik U, Baby S, Pal C, Siddiqi MI, Sundar S, Singh N.

Exp Parasitol. 2016 Nov;170:135-147. doi: 10.1016/j.exppara.2016.09.010. Epub 2016 Sep 22.

PMID:
27666959
41.

Epidemiology of knee osteoarthritis in India and related factors.

Pal CP, Singh P, Chaturvedi S, Pruthi KK, Vij A.

Indian J Orthop. 2016 Sep;50(5):518-522.

42.

The structure and diversity of human, animal and environmental resistomes.

Pal C, Bengtsson-Palme J, Kristiansson E, Larsson DG.

Microbiome. 2016 Oct 7;4(1):54.

43.

Antileishmanial ferrocenylquinoline derivatives: Synthesis and biological evaluation against Leishmania donovani.

Yousuf M, Mukherjee D, Dey S, Pal C, Adhikari S.

Eur J Med Chem. 2016 Nov 29;124:468-479. doi: 10.1016/j.ejmech.2016.08.049. Epub 2016 Aug 24.

PMID:
27598235
44.

Elucidating selection processes for antibiotic resistance in sewage treatment plants using metagenomics.

Bengtsson-Palme J, Hammarén R, Pal C, Östman M, Björlenius B, Flach CF, Fick J, Kristiansson E, Tysklind M, Larsson DGJ.

Sci Total Environ. 2016 Dec 1;572:697-712. doi: 10.1016/j.scitotenv.2016.06.228. Epub 2016 Aug 17.

PMID:
27542633
45.

Strategies to improve usability and preserve accuracy in biological sequence databases.

Bengtsson-Palme J, Boulund F, Edström R, Feizi A, Johnning A, Jonsson VA, Karlsson FH, Pal C, Pereira MB, Rehammar A, Sanchez J, Sanli K, Thorell K.

Proteomics. 2016 Sep;16(18):2454-60. doi: 10.1002/pmic.201600034.

PMID:
27528420
46.

FARAO: the flexible all-round annotation organizer.

Hammarén R, Pal C, Bengtsson-Palme J.

Bioinformatics. 2016 Dec 1;32(23):3664-3666. Epub 2016 Aug 4.

PMID:
27493193
47.

ISLES 2015 - A public evaluation benchmark for ischemic stroke lesion segmentation from multispectral MRI.

Maier O, Menze BH, von der Gablentz J, Ḧani L, Heinrich MP, Liebrand M, Winzeck S, Basit A, Bentley P, Chen L, Christiaens D, Dutil F, Egger K, Feng C, Glocker B, Götz M, Haeck T, Halme HL, Havaei M, Iftekharuddin KM, Jodoin PM, Kamnitsas K, Kellner E, Korvenoja A, Larochelle H, Ledig C, Lee JH, Maes F, Mahmood Q, Maier-Hein KH, McKinley R, Muschelli J, Pal C, Pei L, Rangarajan JR, Reza SMS, Robben D, Rueckert D, Salli E, Suetens P, Wang CW, Wilms M, Kirschke JS, Kr Amer UM, Münte TF, Schramm P, Wiest R, Handels H, Reyes M.

Med Image Anal. 2017 Jan;35:250-269. doi: 10.1016/j.media.2016.07.009. Epub 2016 Jul 21.

48.

Brain tumor segmentation with Deep Neural Networks.

Havaei M, Davy A, Warde-Farley D, Biard A, Courville A, Bengio Y, Pal C, Jodoin PM, Larochelle H.

Med Image Anal. 2017 Jan;35:18-31. doi: 10.1016/j.media.2016.05.004. Epub 2016 May 19.

PMID:
27310171
49.

Adaptive evolution of complex innovations through stepwise metabolic niche expansion.

Szappanos B, Fritzemeier J, Csörgő B, Lázár V, Lu X, Fekete G, Bálint B, Herczeg R, Nagy I, Notebaart RA, Lercher MJ, Pál C, Papp B.

Nat Commun. 2016 May 20;7:11607. doi: 10.1038/ncomms11607.

50.

Efflux Pump Control Alters Synthetic Gene Circuit Function.

Diao J, Charlebois DA, Nevozhay D, Bódi Z, Pál C, Balázsi G.

ACS Synth Biol. 2016 Jul 15;5(7):619-31. doi: 10.1021/acssynbio.5b00154. Epub 2016 May 4.

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