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Items: 1 to 50 of 57

1.

Design and screening of syringic acid analogues as BAX activators-An in silico approach to discover "BH3 mimetics".

Cheemanapalli S, C M A, Pakala SB, Chitta SK.

Comput Biol Chem. 2018 Jun;74:49-62. doi: 10.1016/j.compbiolchem.2018.03.003. Epub 2018 Mar 10.

PMID:
29529398
2.

Combined drug therapeutic strategies for the effective treatment of Triple Negative Breast Cancer.

Chalakur-Ramireddy NKR, Pakala SB.

Biosci Rep. 2018 Jan 30;38(1). pii: BSR20171357. doi: 10.1042/BSR20171357. Print 2018 Feb 28. Review.

3.

Correction to: Integrative analysis associates monocytes with insufficient erythropoiesis during acute Plasmodium cynomolgi malaria in rhesus macaques.

Tang Y, Joyner CJ, Cabrera-Mora M, Saney CL, Lapp SA, Nural MV, Pakala SB, DeBarry JD, Soderberg S; MaHPIC Consortium, Kissinger JC, Lamb TJ, Galinski MR, Styczynski MP.

Malar J. 2017 Dec 4;16(1):486. doi: 10.1186/s12936-017-2134-z.

4.

Integrative analysis associates monocytes with insufficient erythropoiesis during acute Plasmodium cynomolgi malaria in rhesus macaques.

Tang Y, Joyner CJ, Cabrera-Mora M, Saney CL, Lapp SA, Nural MV, Pakala SB, DeBarry JD, Soderberg S; MaHPIC Consortium, Kissinger JC, Lamb TJ, Galinski MR, Styczynski MP.

Malar J. 2017 Sep 22;16(1):384. doi: 10.1186/s12936-017-2029-z. Erratum in: Malar J. 2017 Dec 4;16(1):486.

5.

Cross-reaction between Formosan termite (Coptotermes formosanus) proteins and cockroach allergens.

Mattison CP, Khurana T, Tarver MR, Florane CB, Grimm CC, Pakala SB, Cottone CB, Riegel C, Bren-Mattison Y, Slater JE.

PLoS One. 2017 Aug 2;12(8):e0182260. doi: 10.1371/journal.pone.0182260. eCollection 2017.

6.

PacBio assembly of a Plasmodium knowlesi genome sequence with Hi-C correction and manual annotation of the SICAvar gene family.

Lapp SA, Geraldo JA, Chien JT, Ay F, Pakala SB, Batugedara G, Humphrey J; MaHPIC consortium, DeBARRY JD, Le Roch KG, Galinski MR, Kissinger JC.

Parasitology. 2018 Jan;145(1):71-84. doi: 10.1017/S0031182017001329. Epub 2017 Jul 19.

7.

Stimulation of inducible nitric oxide by hepatitis B virus transactivator protein-HBx requires MTA1 coregulator.

Bui-Nguyen TM, Pakala SB, Sirigiri DR, Martin E, Murad F, Kumar R.

J Biol Chem. 2017 Mar 17;292(11):4765. doi: 10.1074/jbc.A117.065987. No abstract available.

8.

Regulation of NF-κB circuitry by a component of the nucleosome remodeling and deacetylase complex controls inflammatory response homeostasis.

Pakala SB, Bui-Nguyen TM, Reddy SD, Li DQ, Peng S, Rayala SK, Behringer RR, Kumar R.

J Biol Chem. 2017 Mar 17;292(11):4764. doi: 10.1074/jbc.A117.139469. No abstract available.

9.

Novel Glycopyrrolidine Compounds Inhibit Human Cancer Cell Proliferation and Induce Apoptotic Mode of Cell Death.

Bhoopalan H, Tentu S, R P, S P, Venu A, Raghunathan R, Pakala SB, Rayala SK, Venkatraman G.

Cancer Invest. 2017 Apr 21;35(4):215-224. doi: 10.1080/07357907.2016.1260139. Epub 2017 Mar 16.

PMID:
28301214
10.

Effective Strategies and Applications of Dendrimers in the Treatment of Ovarian Cancer.

Kesavan A, Pakala SB, Rayala SK, Venkatraman G.

Curr Pharm Des. 2017 Aug 30;23(21):3099-3104. doi: 10.2174/1381612823666170223165541. Review.

PMID:
28240171
11.

High-Quality Genome Assembly and Annotation for Plasmodium coatneyi, Generated Using Single-Molecule Real-Time PacBio Technology.

Chien JT, Pakala SB, Geraldo JA, Lapp SA, Humphrey JC, Barnwell JW, Kissinger JC, Galinski MR.

Genome Announc. 2016 Sep 1;4(5). pii: e00883-16. doi: 10.1128/genomeA.00883-16.

12.

Bioinformatics exploration of PAK1 (P21-activated kinase-1) revealed potential network gene elements in breast invasive carcinoma.

Yellapu NK, Pulaganti M, Pakala SB.

J Biomol Struct Dyn. 2017 Aug;35(10):2269-2279. doi: 10.1080/07391102.2016.1216894. Epub 2016 Aug 10.

PMID:
27456030
13.

Stimulation of inducible nitric oxide by hepatitis B virus transactivator protein HBx requires MTA1 coregulator.

Bui-Nguyen TM, Pakala SB, Sirigiri DR, Martin E, Murad F, Kumar R.

J Biol Chem. 2016 Jan 15;291(3):1198. doi: 10.1074/jbc.A109.065987. No abstract available.

14.

Regulation of NF-κB circuitry by a component of the nucleosome remodeling and deacetylase complex controls inflammatory response homeostasis.

Pakala SB, Bui-Nguyen TM, Reddy SD, Li DQ, Peng S, Rayala SK, Behringer RR, Kumar R.

J Biol Chem. 2016 Jan 15;291(3):1198. doi: 10.1074/jbc.A110.139469. No abstract available.

15.

Genetic Analysis Using an Isogenic Mating Pair of Aspergillus fumigatus Identifies Azole Resistance Genes and Lack of MAT Locus's Role in Virulence.

Losada L, Sugui JA, Eckhaus MA, Chang YC, Mounaud S, Figat A, Joardar V, Pakala SB, Pakala S, Venepally P, Fedorova N, Nierman WC, Kwon-Chung KJ.

PLoS Pathog. 2015 Apr 24;11(4):e1004834. doi: 10.1371/journal.ppat.1004834. eCollection 2015 Apr.

16.

Suppression subtractive hybridization and comparative expression of a pore-forming toxin and glycosyl hydrolase genes in Rhizoctonia solani during potato sprout infection.

Chamoun R, Samsatly J, Pakala SB, Cubeta MA, Jabaji S.

Mol Genet Genomics. 2015 Jun;290(3):877-900. doi: 10.1007/s00438-014-0962-x. Epub 2014 Dec 4.

PMID:
25472038
17.

Draft Genome Sequence of the Plant-Pathogenic Soil Fungus Rhizoctonia solani Anastomosis Group 3 Strain Rhs1AP.

Cubeta MA, Thomas E, Dean RA, Jabaji S, Neate SM, Tavantzis S, Toda T, Vilgalys R, Bharathan N, Fedorova-Abrams N, Pakala SB, Pakala SM, Zafar N, Joardar V, Losada L, Nierman WC.

Genome Announc. 2014 Oct 30;2(5). pii: e01072-14. doi: 10.1128/genomeA.01072-14.

18.

Cytochrome P450 monooxygenase CYP53 family in fungi: comparative structural and evolutionary analysis and its role as a common alternative anti-fungal drug target.

Jawallapersand P, Mashele SS, Kovačič L, Stojan J, Komel R, Pakala SB, Kraševec N, Syed K.

PLoS One. 2014 Sep 15;9(9):e107209. doi: 10.1371/journal.pone.0107209. eCollection 2014.

19.

The binary protein-protein interaction landscape of Escherichia coli.

Rajagopala SV, Sikorski P, Kumar A, Mosca R, Vlasblom J, Arnold R, Franca-Koh J, Pakala SB, Phanse S, Ceol A, Häuser R, Siszler G, Wuchty S, Emili A, Babu M, Aloy P, Pieper R, Uetz P.

Nat Biotechnol. 2014 Mar;32(3):285-290. doi: 10.1038/nbt.2831. Epub 2014 Feb 23.

20.

Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogen Rhizoctonia solani AG-3.

Losada L, Pakala SB, Fedorova ND, Joardar V, Shabalina SA, Hostetler J, Pakala SM, Zafar N, Thomas E, Rodriguez-Carres M, Dean R, Vilgalys R, Nierman WC, Cubeta MA.

FEMS Microbiol Lett. 2014 Mar;352(2):165-73. doi: 10.1111/1574-6968.12387. Epub 2014 Feb 17.

21.

Metastasis-associated protein 1 is an integral component of the circadian molecular machinery.

Li DQ, Pakala SB, Reddy SD, Peng S, Balasenthil S, Deng CX, Lee CC, Rea MA, Kumar R.

Nat Commun. 2013;4:2545. doi: 10.1038/ncomms3545.

PMID:
24089055
22.

Novel insights into breast cancer genetic variance through RNA sequencing.

Horvath A, Pakala SB, Mudvari P, Reddy SD, Ohshiro K, Casimiro S, Pires R, Fuqua SA, Toi M, Costa L, Nair SS, Sukumar S, Kumar R.

Sci Rep. 2013;3:2256. doi: 10.1038/srep02256.

23.

MTA1 promotes STAT3 transcription and pulmonary metastasis in breast cancer.

Pakala SB, Rayala SK, Wang RA, Ohshiro K, Mudvari P, Reddy SD, Zheng Y, Pires R, Casimiro S, Pillai MR, Costa L, Kumar R.

Cancer Res. 2013 Jun 15;73(12):3761-70. doi: 10.1158/0008-5472.CAN-12-3998. Epub 2013 Apr 11.

24.

MORC2 signaling integrates phosphorylation-dependent, ATPase-coupled chromatin remodeling during the DNA damage response.

Li DQ, Nair SS, Ohshiro K, Kumar A, Nair VS, Pakala SB, Reddy SD, Gajula RP, Eswaran J, Aravind L, Kumar R.

Cell Rep. 2012 Dec 27;2(6):1657-69. doi: 10.1016/j.celrep.2012.11.018.

25.

Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability.

Joardar V, Abrams NF, Hostetler J, Paukstelis PJ, Pakala S, Pakala SB, Zafar N, Abolude OO, Payne G, Andrianopoulos A, Denning DW, Nierman WC.

BMC Genomics. 2012 Dec 12;13:698. doi: 10.1186/1471-2164-13-698.

26.

Signaling-dependent phosphorylation of mitotic centromere-associated kinesin regulates microtubule depolymerization and its centrosomal localization.

Pakala SB, Nair VS, Reddy SD, Kumar R.

J Biol Chem. 2012 Nov 23;287(48):40560-9. doi: 10.1074/jbc.M112.399576. Epub 2012 Oct 10.

27.

Metastasis-associated protein 1/histone deacetylase 4-nucleosome remodeling and deacetylase complex regulates phosphatase and tensin homolog gene expression and function.

Reddy SD, Pakala SB, Molli PR, Sahni N, Karanam NK, Mudvari P, Kumar R.

J Biol Chem. 2012 Aug 10;287(33):27843-50. doi: 10.1074/jbc.M112.348474. Epub 2012 Jun 14.

28.

Transcriptomic landscape of breast cancers through mRNA sequencing.

Eswaran J, Cyanam D, Mudvari P, Reddy SD, Pakala SB, Nair SS, Florea L, Fuqua SA, Godbole S, Kumar R.

Sci Rep. 2012;2:264. doi: 10.1038/srep00264. Epub 2012 Feb 14.

29.

Metastasis-associated protein 1/nucleosome remodeling and histone deacetylase complex in cancer.

Li DQ, Pakala SB, Nair SS, Eswaran J, Kumar R.

Cancer Res. 2012 Jan 15;72(2):387-94. doi: 10.1158/0008-5472.CAN-11-2345. Review.

30.

Mechanism of MTA1 protein overexpression-linked invasion: MTA1 regulation of hyaluronan-mediated motility receptor (HMMR) expression and function.

Sankaran D, Pakala SB, Nair VS, Sirigiri DN, Cyanam D, Ha NH, Li DQ, Santhoshkumar TR, Pillai MR, Kumar R.

J Biol Chem. 2012 Feb 17;287(8):5483-91. doi: 10.1074/jbc.M111.324632. Epub 2011 Dec 27. Retraction in: J Biol Chem. 2013 Sep 6;288(36):26177.

31.

Metastasis-associated protein 1 drives tumor cell migration and invasion through transcriptional repression of RING finger protein 144A.

Marzook H, Li DQ, Nair VS, Mudvari P, Reddy SD, Pakala SB, Santhoshkumar TR, Pillai MR, Kumar R.

J Biol Chem. 2012 Feb 17;287(8):5615-26. doi: 10.1074/jbc.M111.314088. Epub 2011 Dec 19. Erratum in: J Biol Chem. 2012 Apr 6;287(15):12158. Retraction in: J Biol Chem. 2015 Mar 13;290(11):6751.

32.

Lactoferrin-endothelin-1 axis contributes to the development and invasiveness of triple-negative breast cancer phenotypes.

Ha NH, Nair VS, Reddy DN, Mudvari P, Ohshiro K, Ghanta KS, Pakala SB, Li DQ, Costa L, Lipton A, Badwe RA, Fuqua S, Wallon M, Prendergast GC, Kumar R.

Cancer Res. 2011 Dec 1;71(23):7259-69. doi: 10.1158/0008-5472.CAN-11-1143. Epub 2011 Oct 17.

33.

SUMOylation and SUMO-interacting motif (SIM) of metastasis tumor antigen 1 (MTA1) synergistically regulate its transcriptional repressor function.

Cong L, Pakala SB, Ohshiro K, Li DQ, Kumar R.

J Biol Chem. 2011 Dec 23;286(51):43793-808. doi: 10.1074/jbc.M111.267237. Epub 2011 Sep 29.

34.

Inflammatory response to liver fluke Opisthorchis viverrini in mice depends on host master coregulator MTA1, a marker for parasite-induced cholangiocarcinoma in humans.

Nair SS, Bommana A, Pakala SB, Ohshiro K, Lyon AJ, Suttiprapa S, Periago MV, Laha T, Hotez PJ, Bethony JM, Sripa B, Brindley PJ, Kumar R.

Hepatology. 2011 Oct;54(4):1388-97. doi: 10.1002/hep.24518. Epub 2011 Sep 6.

35.

Bidirectional autoregulatory mechanism of metastasis-associated protein 1-alternative reading frame pathway in oncogenesis.

Li DQ, Pakala SB, Reddy SD, Ohshiro K, Zhang JX, Wang L, Zhang Y, Moreno de Alborán I, Pillai MR, Eswaran J, Kumar R.

Proc Natl Acad Sci U S A. 2011 May 24;108(21):8791-6. doi: 10.1073/pnas.1018389108. Epub 2011 May 9.

36.

The metastasis-associated protein-1 gene encodes a host permissive factor for schistosomiasis, a leading global cause of inflammation and cancer.

Nair SS, Bommana A, Bethony JM, Lyon AJ, Ohshiro K, Pakala SB, Rinaldi G, Keegan B, Suttiprapa S, Periago MV, Hotez PJ, Brindley PJ, Kumar R.

Hepatology. 2011 Jul;54(1):285-95. doi: 10.1002/hep.24354. Epub 2011 Jun 8.

37.

Multiple coregulatory control of tyrosine hydroxylase gene transcription.

Reddy SD, Rayala SK, Ohshiro K, Pakala SB, Kobori N, Dash P, Yun S, Qin J, O'Malley BW, Kumar R.

Proc Natl Acad Sci U S A. 2011 Mar 8;108(10):4200-5. doi: 10.1073/pnas.1101193108. Epub 2011 Feb 22.

38.

TGF-β1 signaling targets metastasis-associated protein 1, a new effector in epithelial cells.

Pakala SB, Singh K, Reddy SD, Ohshiro K, Li DQ, Mishra L, Kumar R.

Oncogene. 2011 May 12;30(19):2230-41. doi: 10.1038/onc.2010.608. Epub 2011 Jan 24.

39.

MTA1 coregulation of transglutaminase 2 expression and function during inflammatory response.

Ghanta KS, Pakala SB, Reddy SD, Li DQ, Nair SS, Kumar R.

J Biol Chem. 2011 Mar 4;286(9):7132-8. doi: 10.1074/jbc.M110.199273. Epub 2010 Dec 14.

40.

Carcinoembryonic antigen interacts with TGF-{beta} receptor and inhibits TGF-{beta} signaling in colorectal cancers.

Li Y, Cao H, Jiao Z, Pakala SB, Sirigiri DN, Li W, Kumar R, Mishra L.

Cancer Res. 2010 Oct 15;70(20):8159-68. doi: 10.1158/0008-5472.CAN-10-1073. Epub 2010 Oct 1.

41.

Metastasis-associated protein 1 short form stimulates Wnt1 pathway in mammary epithelial and cancer cells.

Kumar R, Balasenthil S, Pakala SB, Rayala SK, Sahin AA, Ohshiro K.

Cancer Res. 2010 Aug 15;70(16):6598-608. doi: 10.1158/0008-5472.CAN-10-0907.

42.

MTA1 coregulator regulates LPS response via MyD88-dependent signaling.

Pakala SB, Reddy SD, Bui-Nguyen TM, Rangparia SS, Bommana A, Kumar R.

J Biol Chem. 2010 Oct 22;285(43):32787-92. doi: 10.1074/jbc.M110.151340. Epub 2010 Aug 11.

43.

Metastasis-associated protein 1 and its short form variant stimulates Wnt1 transcription through promoting its derepression from Six3 corepressor.

Kumar R, Balasenthil S, Manavathi B, Rayala SK, Pakala SB.

Cancer Res. 2010 Aug 15;70(16):6649-58. doi: 10.1158/0008-5472.CAN-10-0909. Epub 2010 Aug 3.

44.

Acetylation-dependent oncogenic activity of metastasis-associated protein 1 co-regulator.

Ohshiro K, Rayala SK, Wigerup C, Pakala SB, Natha RS, Gururaj AE, Molli PR, Månsson SS, Ramezani A, Hawley RG, Landberg G, Lee NH, Kumar R.

EMBO Rep. 2010 Sep;11(9):691-7. doi: 10.1038/embor.2010.99. Epub 2010 Jul 23.

45.

Arpc1b, a centrosomal protein, is both an activator and substrate of Aurora A.

Molli PR, Li DQ, Bagheri-Yarmand R, Pakala SB, Katayama H, Sen S, Iyer J, Chernoff J, Tsai MY, Nair SS, Kumar R.

J Cell Biol. 2010 Jul 12;190(1):101-14. doi: 10.1083/jcb.200908050. Epub 2010 Jul 5.

46.

Regulation of NF-kappaB circuitry by a component of the nucleosome remodeling and deacetylase complex controls inflammatory response homeostasis.

Pakala SB, Bui-Nguyen TM, Reddy SD, Li DQ, Peng S, Rayala SK, Behringer RR, Kumar R.

J Biol Chem. 2010 Jul 30;285(31):23590-7. doi: 10.1074/jbc.M110.139469. Epub 2010 Jun 2. Retraction in: J Biol Chem. 2017 Mar 17;292(11):4764.

47.

MicroRNAs and cancer therapy: the next wave or here to stay?

Reddy SD, Gajula RP, Pakala SB, Kumar R.

Cancer Biol Ther. 2010 Apr 1;9(7):479-82. Epub 2010 Apr 1. Review.

48.

Revelation of p53-independent function of MTA1 in DNA damage response via modulation of the p21 WAF1-proliferating cell nuclear antigen pathway.

Li DQ, Pakala SB, Reddy SD, Ohshiro K, Peng SH, Lian Y, Fu SW, Kumar R.

J Biol Chem. 2010 Mar 26;285(13):10044-52. doi: 10.1074/jbc.M109.079095. Epub 2010 Jan 13.

49.

Stimulation of inducible nitric oxide by hepatitis B virus transactivator protein HBx requires MTA1 coregulator.

Bui-Nguyen TM, Pakala SB, Sirigiri DR, Martin E, Murad F, Kumar R.

J Biol Chem. 2010 Mar 5;285(10):6980-6. doi: 10.1074/jbc.M109.065987. Epub 2009 Dec 18. Retraction in: J Biol Chem. 2017 Mar 17;292(11):4765.

50.

NF-kappaB signaling mediates the induction of MTA1 by hepatitis B virus transactivator protein HBx.

Bui-Nguyen TM, Pakala SB, Sirigiri RD, Xia W, Hung MC, Sarin SK, Kumar V, Slagle BL, Kumar R.

Oncogene. 2010 Feb 25;29(8):1179-89. doi: 10.1038/onc.2009.404. Epub 2009 Dec 14.

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