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Items: 1 to 50 of 203

1.

Whole genome sequencing of amplified Plasmodium knowlesi DNA from unprocessed blood reveals genetic exchange events between Malaysian Peninsular and Borneo subpopulations.

Benavente ED, Gomes AR, De Silva JR, Grigg M, Walker H, Barber BE, William T, Yeo TW, de Sessions PF, Ramaprasad A, Ibrahim A, Charleston J, Hibberd ML, Pain A, Moon RW, Auburn S, Ling LY, Anstey NM, Clark TG, Campino S.

Sci Rep. 2019 Jul 8;9(1):9873. doi: 10.1038/s41598-019-46398-z.

2.

Whole genome sequencing provides additional insights into recurrent tuberculosis classified as endogenous reactivation by IS6110 DNA fingerprinting.

Dippenaar A, De Vos M, Marx FM, Adroub SA, van Helden PD, Pain A, Sampson SL, Warren RM.

Infect Genet Evol. 2019 Jul 2;75:103948. doi: 10.1016/j.meegid.2019.103948. [Epub ahead of print]

PMID:
31276801
3.
4.

Discovering, Characterizing, and Applying Acyl Homoserine Lactone-Quenching Enzymes to Mitigate Microbe-Associated Problems Under Saline Conditions.

Wang TN, Guan QT, Pain A, Kaksonen AH, Hong PY.

Front Microbiol. 2019 Apr 17;10:823. doi: 10.3389/fmicb.2019.00823. eCollection 2019.

5.

Correction: Highly diverged novel subunit composition of apicomplexan F-type ATP synthase identified from Toxoplasma gondii.

Salunke R, Mourier T, Banerjee M, Pain A, Shanmugam D.

PLoS Biol. 2019 Mar 6;17(3):e3000176. doi: 10.1371/journal.pbio.3000176. eCollection 2019 Mar.

6.

Dual role of the Anopheles coluzzii Venus Kinase Receptor in both larval growth and immunity.

Gouignard N, Cherrier F, Brito-Fravallo E, Pain A, Zmarlak NM, Cailliau K, Genève C, Vernick KD, Dissous C, Mitri C.

Sci Rep. 2019 Mar 5;9(1):3615. doi: 10.1038/s41598-019-40407-x.

7.

A fast and cost-effective microsampling protocol incorporating reduced animal usage for time-series transcriptomics in rodent malaria parasites.

Ramaprasad A, Subudhi AK, Culleton R, Pain A.

Malar J. 2019 Jan 25;18(1):26. doi: 10.1186/s12936-019-2659-4.

8.

Integrated transcriptomic and proteomic analysis of pathogenic mycobacteria and their esx-1 mutants reveal secretion-dependent regulation of ESX-1 substrates and WhiB6 as a transcriptional regulator.

Abdallah AM, Weerdenburg EM, Guan Q, Ummels R, Borggreve S, Adroub SA, Malas TB, Naeem R, Zhang H, Otto TD, Bitter W, Pain A.

PLoS One. 2019 Jan 23;14(1):e0211003. doi: 10.1371/journal.pone.0211003. eCollection 2019.

9.

Theileria highjacks JNK2 into a complex with the macroschizont GPI (GlycosylPhosphatidylInositol)-anchored surface protein p104.

Latré De Laté P, Haidar M, Ansari H, Tajeri S, Szarka E, Alexa A, Woods K, Reményi A, Pain A, Langsley G.

Cell Microbiol. 2019 Mar;21(3):e12973. doi: 10.1111/cmi.12973. Epub 2018 Dec 5.

PMID:
30412643
10.

Experimental Adaptation of the Yellow Fever Virus to the Mosquito Aedes albopictus and Potential risk of urban epidemics in Brazil, South America.

Amraoui F, Pain A, Piorkowski G, Vazeille M, Couto-Lima D, de Lamballerie X, Lourenço-de-Oliveira R, Failloux AB.

Sci Rep. 2018 Sep 25;8(1):14337. doi: 10.1038/s41598-018-32198-4.

11.

Proteomic profiling of the plasma of Gambian children with cerebral malaria.

Moussa EM, Huang H, Thézénas ML, Fischer R, Ramaprasad A, Sisay-Joof F, Jallow M, Pain A, Kwiatkowski D, Kessler BM, Casals-Pascual C.

Malar J. 2018 Sep 24;17(1):337. doi: 10.1186/s12936-018-2487-y.

12.

Arbuscular mycorrhizal fungi and sewage sludge enhance growth and adaptation of Metrosideros laurifolia on ultramafic soil in New Caledonia: A field experiment.

Amir H, Cavaloc Y, Laurent A, Pagand P, Gunkel P, Lemestre M, Médevielle V, Pain A, McCoy S.

Sci Total Environ. 2019 Feb 15;651(Pt 1):334-343. doi: 10.1016/j.scitotenv.2018.09.153. Epub 2018 Sep 13.

PMID:
30240917
13.

Highly diverged novel subunit composition of apicomplexan F-type ATP synthase identified from Toxoplasma gondii.

Salunke R, Mourier T, Banerjee M, Pain A, Shanmugam D.

PLoS Biol. 2018 Jul 13;16(7):e2006128. doi: 10.1371/journal.pbio.2006128. eCollection 2018 Jul. Erratum in: PLoS Biol. 2019 Mar 6;17(3):e3000176.

14.

Highly focused transcriptional response of Anopheles coluzzii to O'nyong nyong arbovirus during the primary midgut infection.

Carissimo G, Pain A, Belda E, Vernick KD.

BMC Genomics. 2018 Jul 9;19(1):526. doi: 10.1186/s12864-018-4918-0.

15.

The conserved regulatory RNA RsaE down-regulates the arginine degradation pathway in Staphylococcus aureus.

Rochat T, Bohn C, Morvan C, Le Lam TN, Razvi F, Pain A, Toffano-Nioche C, Ponien P, Jacq A, Jacquet E, Fey PD, Gautheret D, Bouloc P.

Nucleic Acids Res. 2018 Sep 28;46(17):8803-8816. doi: 10.1093/nar/gky584.

16.

Genetic Determinants Associated With in Vivo Survival of Burkholderia cenocepacia in the Caenorhabditis elegans Model.

Wong YC, Abd El Ghany M, Ghazzali RNM, Yap SJ, Hoh CC, Pain A, Nathan S.

Front Microbiol. 2018 May 29;9:1118. doi: 10.3389/fmicb.2018.01118. eCollection 2018.

17.

Quantifying the Effects of 16p11.2 Copy Number Variants on Brain Structure: A Multisite Genetic-First Study.

Martin-Brevet S, Rodríguez-Herreros B, Nielsen JA, Moreau C, Modenato C, Maillard AM, Pain A, Richetin S, Jønch AE, Qureshi AY, Zürcher NR, Conus P; 16p11.2 European Consortium; Simons Variation in Individuals Project (VIP) Consortium, Chung WK, Sherr EH, Spiro JE, Kherif F, Beckmann JS, Hadjikhani N, Reymond A, Buckner RL, Draganski B, Jacquemont S.

Biol Psychiatry. 2018 Aug 15;84(4):253-264. doi: 10.1016/j.biopsych.2018.02.1176. Epub 2018 Mar 27.

18.

Author Correction: Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis.

Coll F, Phelan J, Hill-Cawthorne GA, Nair MB, Mallard K, Ali S, Abdallah AM, Alghamdi S, Alsomali M, Ahmed AO, Portelli S, Oppong Y, Alves A, Bessa TB, Campino S, Caws M, Chatterjee A, Crampin AC, Dheda K, Furnham N, Glynn JR, Grandjean L, Ha DM, Hasan R, Hasan Z, Hibberd ML, Joloba M, Jones-López EC, Matsumoto T, Miranda A, Moore DJ, Mocillo N, Panaiotov S, Parkhill J, Penha C, Perdigão J, Portugal I, Rchiad Z, Robledo J, Sheen P, Shesha NT, Sirgel FA, Sola C, Sousa EO, Streicher EM, Van Helden P, Viveiros M, Warren RM, McNerney R, Pain A, Clark TG.

Nat Genet. 2018 May;50(5):764. doi: 10.1038/s41588-018-0074-3.

PMID:
29674744
19.

Accelerating Early Antituberculosis Drug Discovery by Creating Mycobacterial Indicator Strains That Predict Mode of Action.

Boot M, Commandeur S, Subudhi AK, Bahira M, Smith TC 2nd, Abdallah AM, van Gemert M, Lelièvre J, Ballell L, Aldridge BB, Pain A, Speer A, Bitter W.

Antimicrob Agents Chemother. 2018 Jun 26;62(7). pii: e00083-18. doi: 10.1128/AAC.00083-18. Print 2018 Jul.

20.

miR-126-5p by direct targeting of JNK-interacting protein-2 (JIP-2) plays a key role in Theileria-infected macrophage virulence.

Haidar M, Rchiad Z, Ansari HR, Ben-Rached F, Tajeri S, Latre De Late P, Langsley G, Pain A.

PLoS Pathog. 2018 Mar 23;14(3):e1006942. doi: 10.1371/journal.ppat.1006942. eCollection 2018 Mar.

21.

Clonal expansion across the seas as seen through CPLP-TB database: A joint effort in cataloguing Mycobacterium tuberculosis genetic diversity in Portuguese-speaking countries.

Perdigão J, Silva C, Diniz J, Pereira C, Machado D, Ramos J, Silva H, Abilleira F, Brum C, Reis AJ, Macedo M, Scaini JL, Silva AB, Esteves L, Macedo R, Maltez F, Clemente S, Coelho E, Viegas S, Rabna P, Rodrigues A, Taveira N, Jordao L, Kritski A, Lapa E Silva JR, Mokrousov I, Couvin D, Rastogi N, Couto I, Pain A, McNerney R, Clark TG, von Groll A, Dalla-Costa ER, Rossetti ML, Silva PEA, Viveiros M, Portugal I.

Infect Genet Evol. 2019 Aug;72:44-58. doi: 10.1016/j.meegid.2018.03.011. Epub 2018 Mar 17.

22.

Timing of host feeding drives rhythms in parasite replication.

Prior KF, van der Veen DR, O'Donnell AJ, Cumnock K, Schneider D, Pain A, Subudhi A, Ramaprasad A, Rund SSC, Savill NJ, Reece SE.

PLoS Pathog. 2018 Feb 26;14(2):e1006900. doi: 10.1371/journal.ppat.1006900. eCollection 2018 Feb.

23.

Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis.

Coll F, Phelan J, Hill-Cawthorne GA, Nair MB, Mallard K, Ali S, Abdallah AM, Alghamdi S, Alsomali M, Ahmed AO, Portelli S, Oppong Y, Alves A, Bessa TB, Campino S, Caws M, Chatterjee A, Crampin AC, Dheda K, Furnham N, Glynn JR, Grandjean L, Minh Ha D, Hasan R, Hasan Z, Hibberd ML, Joloba M, Jones-López EC, Matsumoto T, Miranda A, Moore DJ, Mocillo N, Panaiotov S, Parkhill J, Penha C, Perdigão J, Portugal I, Rchiad Z, Robledo J, Sheen P, Shesha NT, Sirgel FA, Sola C, Oliveira Sousa E, Streicher EM, Helden PV, Viveiros M, Warren RM, McNerney R, Pain A, Clark TG.

Nat Genet. 2018 Feb;50(2):307-316. doi: 10.1038/s41588-017-0029-0. Epub 2018 Jan 22. Erratum in: Nat Genet. 2018 Apr 19;:.

24.

Mutations in ppe38 block PE_PGRS secretion and increase virulence of Mycobacterium tuberculosis.

Ates LS, Dippenaar A, Ummels R, Piersma SR, van der Woude AD, van der Kuij K, Le Chevalier F, Mata-Espinosa D, Barrios-Payán J, Marquina-Castillo B, Guapillo C, Jiménez CR, Pain A, Houben ENG, Warren RM, Brosch R, Hernández-Pando R, Bitter W.

Nat Microbiol. 2018 Feb;3(2):181-188. doi: 10.1038/s41564-017-0090-6. Epub 2018 Jan 15.

PMID:
29335553
25.

A reference genome and methylome for the Plasmodium knowlesi A1-H.1 line.

Benavente ED, de Sessions PF, Moon RW, Grainger M, Holder AA, Blackman MJ, Roper C, Drakeley CJ, Pain A, Sutherland CJ, Hibberd ML, Campino S, Clark TG.

Int J Parasitol. 2018 Mar;48(3-4):191-196. doi: 10.1016/j.ijpara.2017.09.008. Epub 2017 Dec 16.

26.

Hamman's syndrome in diabetic ketoacidosis.

Pain AR, Pomroy J, Benjamin A.

Endocrinol Diabetes Metab Case Rep. 2017 Nov 30;2017. pii: 17-0135. doi: 10.1530/EDM-17-0135. eCollection 2017.

27.

Genome-wide mutagenesis and multi-drug resistance in American trypanosomes induced by the front-line drug benznidazole.

Campos MC, Phelan J, Francisco AF, Taylor MC, Lewis MD, Pain A, Clark TG, Kelly JM.

Sci Rep. 2017 Oct 31;7(1):14407. doi: 10.1038/s41598-017-14986-6.

28.

A multiple genome analysis of Mycobacterium tuberculosis reveals specific novel genes and mutations associated with pyrazinamide resistance.

Sheen P, Requena D, Gushiken E, Gilman RH, Antiparra R, Lucero B, Lizárraga P, Cieza B, Roncal E, Grandjean L, Pain A, McNerney R, Clark TG, Moore D, Zimic M.

BMC Genomics. 2017 Oct 11;18(1):769. doi: 10.1186/s12864-017-4146-z.

29.

Enteric Infections Circulating during Hajj Seasons, 2011-2013.

Abd El Ghany M, Alsomali M, Almasri M, Padron Regalado E, Naeem R, Tukestani A, Asiri A, Hill-Cawthorne GA, Pain A, Memish ZA.

Emerg Infect Dis. 2017 Oct;23(10). doi: 10.3201/eid2310.161642.

30.

Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations.

Diez Benavente E, Florez de Sessions P, Moon RW, Holder AA, Blackman MJ, Roper C, Drakeley CJ, Pain A, Sutherland CJ, Hibberd ML, Campino S, Clark TG.

PLoS Genet. 2017 Sep 18;13(9):e1007008. doi: 10.1371/journal.pgen.1007008. eCollection 2017 Sep.

31.

Proteogenomic Investigation of Strain Variation in Clinical Mycobacterium tuberculosis Isolates.

Heunis T, Dippenaar A, Warren RM, van Helden PD, van der Merwe RG, Gey van Pittius NC, Pain A, Sampson SL, Tabb DL.

J Proteome Res. 2017 Oct 6;16(10):3841-3851. doi: 10.1021/acs.jproteome.7b00483. Epub 2017 Sep 11.

PMID:
28820946
32.

Rapid identification of genes controlling virulence and immunity in malaria parasites.

Abkallo HM, Martinelli A, Inoue M, Ramaprasad A, Xangsayarath P, Gitaka J, Tang J, Yahata K, Zoungrana A, Mitaka H, Acharjee A, Datta PP, Hunt P, Carter R, Kaneko O, Mustonen V, Illingworth CJR, Pain A, Culleton R.

PLoS Pathog. 2017 Jul 12;13(7):e1006447. doi: 10.1371/journal.ppat.1006447. eCollection 2017 Jul.

33.

The Anopheles gambiae 2La chromosome inversion is associated with susceptibility to Plasmodium falciparum in Africa.

Riehle MM, Bukhari T, Gneme A, Guelbeogo WM, Coulibaly B, Fofana A, Pain A, Bischoff E, Renaud F, Beavogui AH, Traore SF, Sagnon N, Vernick KD.

Elife. 2017 Jun 23;6. pii: e25813. doi: 10.7554/eLife.25813.

34.

Proteomic profiling of the brain of mice with experimental cerebral malaria.

Moussa E, Huang H, Ahras M, Lall A, Thezenas ML, Fischer R, Kessler BM, Pain A, Billker O, Casals-Pascual C.

J Proteomics. 2018 May 30;180:61-69. doi: 10.1016/j.jprot.2017.06.002. Epub 2017 Jun 5.

PMID:
28602553
35.

Progenitor strain introduction of Mycobacterium bovis at the wildlife-livestock interface can lead to clonal expansion of the disease in a single ecosystem.

Dippenaar A, Parsons SDC, Miller MA, Hlokwe T, Gey van Pittius NC, Adroub SA, Abdallah AM, Pain A, Warren RM, Michel AL, van Helden PD.

Infect Genet Evol. 2017 Jul;51:235-238. doi: 10.1016/j.meegid.2017.04.012. Epub 2017 Apr 13.

PMID:
28412523
36.

Population genomics reveals that an anthropophilic population of Aedes aegypti mosquitoes in West Africa recently gave rise to American and Asian populations of this major disease vector.

Crawford JE, Alves JM, Palmer WJ, Day JP, Sylla M, Ramasamy R, Surendran SN, Black WC 4th, Pain A, Jiggins FM.

BMC Biol. 2017 Feb 28;15(1):16. doi: 10.1186/s12915-017-0351-0.

37.

Emergence of Indigenous Artemisinin-Resistant Plasmodium falciparum in Africa.

Lu F, Culleton R, Zhang M, Ramaprasad A, von Seidlein L, Zhou H, Zhu G, Tang J, Liu Y, Wang W, Cao Y, Xu S, Gu Y, Li J, Zhang C, Gao Q, Menard D, Pain A, Yang H, Zhang Q, Cao J.

N Engl J Med. 2017 Mar 9;376(10):991-3. doi: 10.1056/NEJMc1612765. Epub 2017 Feb 22. No abstract available.

38.

Outcomes, infectiousness, and transmission dynamics of patients with extensively drug-resistant tuberculosis and home-discharged patients with programmatically incurable tuberculosis: a prospective cohort study.

Dheda K, Limberis JD, Pietersen E, Phelan J, Esmail A, Lesosky M, Fennelly KP, Te Riele J, Mastrapa B, Streicher EM, Dolby T, Abdallah AM, Ben-Rached F, Simpson J, Smith L, Gumbo T, van Helden P, Sirgel FA, McNerney R, Theron G, Pain A, Clark TG, Warren RM.

Lancet Respir Med. 2017 Apr;5(4):269-281. doi: 10.1016/S2213-2600(16)30433-7. Epub 2017 Jan 19.

PMID:
28109869
39.

Turkish and Japanese Mycobacterium tuberculosis sublineages share a remote common ancestor.

Refrégier G, Abadia E, Matsumoto T, Ano H, Takashima T, Tsuyuguchi I, Aktas E, Cömert F, Gomgnimbou MK, Panaiotov S, Phelan J, Coll F, McNerney R, Pain A, Clark TG, Sola C.

Infect Genet Evol. 2016 Nov;45:461-473. doi: 10.1016/j.meegid.2016.10.009. Epub 2016 Oct 14.

40.

The draft genome of Mycobacterium aurum, a potential model organism for investigating drugs against Mycobacterium tuberculosis and Mycobacterium leprae.

Phelan J, Maitra A, McNerney R, Nair M, Gupta A, Coll F, Pain A, Bhakta S, Clark TG.

Int J Mycobacteriol. 2015 Sep;4(3):207-16. doi: 10.1016/j.ijmyco.2015.05.001. Epub 2015 Jun 4.

41.

Candidate Essential Genes in Burkholderia cenocepacia J2315 Identified by Genome-Wide TraDIS.

Wong YC, Abd El Ghany M, Naeem R, Lee KW, Tan YC, Pain A, Nathan S.

Front Microbiol. 2016 Aug 22;7:1288. doi: 10.3389/fmicb.2016.01288. eCollection 2016.

42.

The burden of cancer in Mexico, 1990-2013.

Gómez-Dantés H, Lamadrid-Figueroa H, Cahuana-Hurtado L, Silverman-Retana O, Montero P, González-Robledo MC, Fitzmaurice C, Pain A, Allen C, Dicker DJ, Hamavid H, López A, Murray C, Naghavi M, Lozano R.

Salud Publica Mex. 2016 Apr;58(2):118-31.

PMID:
27557370
43.

Correction: An Evolution-Based Screen for Genetic Differentiation between Anopheles Sister Taxa Enriches for Detection of Functional Immune Factors.

Mitri C, Bischoff E, Takashima E, Williams M, Eiglmeier K, Pain A, Guelbeogo WM, Gneme A, Brito-Fravallo E, Holm I, Lavazec C, Sagnon N, Baxter RH, Riehle MM, Vernick KD.

PLoS Pathog. 2016 Aug 12;12(8):e1005836. doi: 10.1371/journal.ppat.1005836. eCollection 2016 Aug.

44.

Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species.

Ansari HR, Templeton TJ, Subudhi AK, Ramaprasad A, Tang J, Lu F, Naeem R, Hashish Y, Oguike MC, Benavente ED, Clark TG, Sutherland CJ, Barnwell JW, Culleton R, Cao J, Pain A.

Int J Parasitol. 2016 Oct;46(11):685-96. doi: 10.1016/j.ijpara.2016.05.009. Epub 2016 Jul 5.

45.

Translational repression of the cpw-wpc gene family in the malaria parasite Plasmodium.

Rao PN, Santos JM, Pain A, Templeton TJ, Mair GR.

Parasitol Int. 2016 Oct;65(5 Pt A):463-71. doi: 10.1016/j.parint.2016.06.007. Epub 2016 Jun 14.

PMID:
27312996
46.

Normocyte-binding protein required for human erythrocyte invasion by the zoonotic malaria parasite Plasmodium knowlesi.

Moon RW, Sharaf H, Hastings CH, Ho YS, Nair MB, Rchiad Z, Knuepfer E, Ramaprasad A, Mohring F, Amir A, Yusuf NA, Hall J, Almond N, Lau YL, Pain A, Blackman MJ, Holder AA.

Proc Natl Acad Sci U S A. 2016 Jun 28;113(26):7231-6. doi: 10.1073/pnas.1522469113. Epub 2016 Jun 14.

47.

Genomic and Phenotypic Analyses Reveal the Emergence of an Atypical Salmonella enterica Serovar Senftenberg Variant in China.

Abd El Ghany M, Shi X, Li Y, Ansari HR, Hill-Cawthorne GA, Ho YS, Naeem R, Pickard D, Klena JD, Xu X, Pain A, Hu Q.

J Clin Microbiol. 2016 Aug;54(8):2014-22. doi: 10.1128/JCM.00052-16. Epub 2016 May 25.

48.

Metabolic pathway redundancy within the apicomplexan-dinoflagellate radiation argues against an ancient chromalveolate plastid.

Waller RF, Gornik SG, Koreny L, Pain A.

Commun Integr Biol. 2015 Dec 8;9(1):e1116653. doi: 10.1080/19420889.2015.1116653. eCollection 2016 Jan-Feb.

49.

Proteomic Investigation of Rhizoctonia solani AG 4 Identifies Secretome and Mycelial Proteins with Roles in Plant Cell Wall Degradation and Virulence.

Lakshman DK, Roberts DP, Garrett WM, Natarajan SS, Darwish O, Alkharouf N, Pain A, Khan F, Jambhulkar PP, Mitra A.

J Agric Food Chem. 2016 Apr 20;64(15):3101-10. doi: 10.1021/acs.jafc.5b05735. Epub 2016 Apr 6.

PMID:
27019116
50.

Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance.

Phelan J, Coll F, McNerney R, Ascher DB, Pires DE, Furnham N, Coeck N, Hill-Cawthorne GA, Nair MB, Mallard K, Ramsay A, Campino S, Hibberd ML, Pain A, Rigouts L, Clark TG.

BMC Med. 2016 Mar 23;14:31. doi: 10.1186/s12916-016-0575-9.

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