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Items: 12

1.

Loss of Heterozygosity Drives Adaptation in Hybrid Yeast.

Smukowski Heil CS, DeSevo CG, Pai DA, Tucker CM, Hoang ML, Dunham MJ.

Mol Biol Evol. 2017 Jul 1;34(7):1596-1612. doi: 10.1093/molbev/msx098.

2.

Differential paralog divergence modulates genome evolution across yeast species.

Sanchez MR, Miller AW, Liachko I, Sunshine AB, Lynch B, Huang M, Alcantara E, DeSevo CG, Pai DA, Tucker CM, Hoang ML, Dunham MJ.

PLoS Genet. 2017 Feb 14;13(2):e1006585. doi: 10.1371/journal.pgen.1006585. eCollection 2017 Feb.

3.

DEK-targeting DNA aptamers as therapeutics for inflammatory arthritis.

Mor-Vaknin N, Saha A, Legendre M, Carmona-Rivera C, Amin MA, Rabquer BJ, Gonzales-Hernandez MJ, Jorns J, Mohan S, Yalavarthi S, Pai DA, Angevine K, Almburg SJ, Knight JS, Adams BS, Koch AE, Fox DA, Engelke DR, Kaplan MJ, Markovitz DM.

Nat Commun. 2017 Feb 6;8:14252. doi: 10.1038/ncomms14252.

4.

RNAs nonspecifically inhibit RNA polymerase II by preventing binding to the DNA template.

Pai DA, Kaplan CD, Kweon HK, Murakami K, Andrews PC, Engelke DR.

RNA. 2014 May;20(5):644-55. doi: 10.1261/rna.040444.113. Epub 2014 Mar 10.

5.

Mod5 protein binds to tRNA gene complexes and affects local transcriptional silencing.

Pratt-Hyatt M, Pai DA, Haeusler RA, Wozniak GG, Good PD, Miller EL, McLeod IX, Yates JR 3rd, Hopper AK, Engelke DR.

Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):E3081-9. doi: 10.1073/pnas.1219946110. Epub 2013 Jul 29. Erratum in: Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2397.

6.

The nucleolus: a raft adrift in the nuclear sea or the keystone in nuclear structure?

O'Sullivan JM, Pai DA, Cridge AG, Engelke DR, Ganley AR.

Biomol Concepts. 2013 Jun;4(3):277-86. doi: 10.1515/bmc-2012-0043. Review.

7.

Silencing near tRNA genes is nucleosome-mediated and distinct from boundary element function.

Good PD, Kendall A, Ignatz-Hoover J, Miller EL, Pai DA, Rivera SR, Carrick B, Engelke DR.

Gene. 2013 Aug 15;526(1):7-15. doi: 10.1016/j.gene.2013.05.016. Epub 2013 May 23.

8.

tRNA gene identity affects nuclear positioning.

Rodley CD, Pai DA, Mills TA, Engelke DR, O'Sullivan JM.

PLoS One. 2011;6(12):e29267. doi: 10.1371/journal.pone.0029267. Epub 2011 Dec 19.

9.

Cellular dynamics of tRNAs and their genes.

Hopper AK, Pai DA, Engelke DR.

FEBS Lett. 2010 Jan 21;584(2):310-7. doi: 10.1016/j.febslet.2009.11.053. Review.

10.

Spatial organization of genes as a component of regulated expression.

Pai DA, Engelke DR.

Chromosoma. 2010 Feb;119(1):13-25. doi: 10.1007/s00412-009-0236-2. Epub 2009 Aug 30. Review.

11.

The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast.

Gresham D, Desai MM, Tucker CM, Jenq HT, Pai DA, Ward A, DeSevo CG, Botstein D, Dunham MJ.

PLoS Genet. 2008 Dec;4(12):e1000303. doi: 10.1371/journal.pgen.1000303. Epub 2008 Dec 12.

12.

Mapping novel traits by array-assisted bulk segregant analysis in Saccharomyces cerevisiae.

Brauer MJ, Christianson CM, Pai DA, Dunham MJ.

Genetics. 2006 Jul;173(3):1813-6. Epub 2006 Apr 19.

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