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Items: 1 to 50 of 51

1.

Discovery and Further Studies on Giant Viruses at the IHU Mediterranee Infection That Modified the Perception of the Virosphere.

Rolland C, Andreani J, Louazani AC, Aherfi S, Francis R, Rodrigues R, Silva LS, Sahmi D, Mougari S, Chelkha N, Bekliz M, Silva L, Assis F, Dornas F, Khalil JYB, Pagnier I, Desnues C, Levasseur A, Colson P, Abrahão J, La Scola B.

Viruses. 2019 Mar 30;11(4). pii: E312. doi: 10.3390/v11040312. Review.

2.

'Massilibacteroïdes vaginae' gen. nov., sp. nov., a new genus within the family of Bacteroïdaceae isolated from a patient with vaginosis.

Jneid J, Bou Khalil JY, Aherfi S, Blanc-Tailleur C, Raoult D, La Scola B, Pagnier I.

New Microbes New Infect. 2017 Sep 6;21:1-8. doi: 10.1016/j.nmni.2017.08.002. eCollection 2018 Jan.

3.

Compartmentalization in PVC super-phylum: evolution and impact.

Pinos S, Pontarotti P, Raoult D, Baudoin JP, Pagnier I.

Biol Direct. 2016 Aug 9;11:38. doi: 10.1186/s13062-016-0144-3.

4.

Legionella saoudiensis sp. nov., isolated from a sewage water sample.

Bajrai LH, Azhar EI, Yasir M, Jardot P, Barrassi L, Raoult D, La Scola B, Pagnier I.

Int J Syst Evol Microbiol. 2016 Nov;66(11):4367-4371. doi: 10.1099/ijsem.0.001357. Epub 2016 Aug 2.

PMID:
27489234
5.

Draft Genome Sequence of Providencia heimbachae, Isolated from a Diabetic Foot Ulcer.

Jneid J, Benamar S, Pagnier I, Levy PY, Lavigne JP, La Scola B.

Genome Announc. 2016 Apr 14;4(2). pii: e00276-16. doi: 10.1128/genomeA.00276-16.

6.

Developmental Cycle and Genome Analysis of "Rubidus massiliensis," a New Vermamoeba vermiformis Pathogen.

Bou Khalil JY, Benamar S, Baudoin JP, Croce O, Blanc-Tailleur C, Pagnier I, Raoult D, La Scola B.

Front Cell Infect Microbiol. 2016 Mar 15;6:31. doi: 10.3389/fcimb.2016.00031. eCollection 2016.

7.

Isolation of new Brazilian giant viruses from environmental samples using a panel of protozoa.

Dornas FP, Khalil JY, Pagnier I, Raoult D, Abrahão J, La Scola B.

Front Microbiol. 2015 Oct 6;6:1086. doi: 10.3389/fmicb.2015.01086. eCollection 2015.

8.

Identification of giant Mimivirus protein functions using RNA interference.

Sobhy H, Scola BL, Pagnier I, Raoult D, Colson P.

Front Microbiol. 2015 Apr 28;6:345. doi: 10.3389/fmicb.2015.00345. eCollection 2015.

9.

Babela massiliensis, a representative of a widespread bacterial phylum with unusual adaptations to parasitism in amoebae.

Pagnier I, Yutin N, Croce O, Makarova KS, Wolf YI, Benamar S, Raoult D, Koonin EV, La Scola B.

Biol Direct. 2015 Mar 31;10:13. doi: 10.1186/s13062-015-0043-z.

10.

Isolation of Vermamoeba vermiformis and associated bacteria in hospital water.

Pagnier I, Valles C, Raoult D, La Scola B.

Microb Pathog. 2015 Mar;80:14-20. doi: 10.1016/j.micpath.2015.02.006. Epub 2015 Feb 16.

PMID:
25697664
11.

Current and past strategies for bacterial culture in clinical microbiology.

Lagier JC, Edouard S, Pagnier I, Mediannikov O, Drancourt M, Raoult D.

Clin Microbiol Rev. 2015 Jan;28(1):208-36. doi: 10.1128/CMR.00110-14. Review.

12.

Genome Sequence of Legionella massiliensis, Isolated from a Cooling Tower Water Sample.

Pagnier I, Croce O, Robert C, Raoult D, La Scola B.

Genome Announc. 2014 Oct 16;2(5). pii: e01068-14. doi: 10.1128/genomeA.01068-14.

13.

Non-contiguous finished genome sequence and description of Anaerococcus provenciensis sp. nov.

Pagnier I, Croce O, Robert C, Raoult D, La Scola B.

Stand Genomic Sci. 2014 Apr 10;9(3):1198-210. doi: 10.4056/sigs.5501035. eCollection 2014 Jun 15.

14.

Non-contiguous finished genome sequence and description of Bacteroides neonati sp. nov., a new species of anaerobic bacterium.

Cassir N, Croce O, Pagnier I, Benamar S, Couderc C, Robert C, Raoult D, La Scola B.

Stand Genomic Sci. 2014 Apr 4;9(3):794-806. doi: 10.4056/sigs.5159098. eCollection 2014 Jun 15.

15.

Non-contiguous finished genome sequence and description of Fenollaria massiliensis gen. nov., sp. nov., a new genus of anaerobic bacterium.

Pagnier I, Croce O, Robert C, Raoult D, La Scola B.

Stand Genomic Sci. 2014 Feb 15;9(3):704-17. doi: 10.4056/sigs.3957647. eCollection 2014 Jun 15.

16.

The expanding family Marseilleviridae.

Aherfi S, La Scola B, Pagnier I, Raoult D, Colson P.

Virology. 2014 Oct;466-467:27-37. doi: 10.1016/j.virol.2014.07.014. Epub 2014 Aug 5. Review.

17.

Fetuin is the key for nanon self-propagation.

Chabrière E, Gonzalez D, Azza S, Durand P, Shiekh FA, Moal V, Baudoin JP, Pagnier I, Raoult D.

Microb Pathog. 2014 Aug;73:25-30. doi: 10.1016/j.micpath.2014.05.003. Epub 2014 May 24.

18.

Complete genome sequence of Tunisvirus, a new member of the proposed family Marseilleviridae.

Aherfi S, Boughalmi M, Pagnier I, Fournous G, La Scola B, Raoult D, Colson P.

Arch Virol. 2014 Sep;159(9):2349-58. doi: 10.1007/s00705-014-2023-5. Epub 2014 Apr 26.

PMID:
24770845
19.

Zamilon, a novel virophage with Mimiviridae host specificity.

Gaia M, Benamar S, Boughalmi M, Pagnier I, Croce O, Colson P, Raoult D, La Scola B.

PLoS One. 2014 Apr 18;9(4):e94923. doi: 10.1371/journal.pone.0094923. eCollection 2014.

20.

Draft genome sequences of Terra1 and Terra2 viruses, new members of the family Mimiviridae isolated from soil.

Yoosuf N, Pagnier I, Fournous G, Robert C, Raoult D, La Scola B, Colson P.

Virology. 2014 Mar;452-453:125-32. doi: 10.1016/j.virol.2013.12.032. Epub 2014 Jan 31.

21.

Genome Sequence of Legionella anisa, Isolated from a Respiratory Sample, Using an Amoebal Coculture Procedure.

Pagnier I, Croce O, Robert C, Raoult D, La Scola B.

Genome Announc. 2014 Feb 27;2(1). pii: e00031-14. doi: 10.1128/genomeA.00031-14.

22.

Non-contiguous finished genome sequence and description of Anaerococcus pacaensis sp. nov., a new species of anaerobic bacterium.

Pagnier I, Croce O, Robert C, Raoult D, La Scola B.

Stand Genomic Sci. 2013 Aug 10;8(3):548-60. doi: 10.4056/sigs.4177252. eCollection 2013 Jul 30.

23.

Complete genome sequence of Courdo11 virus, a member of the family Mimiviridae.

Yoosuf N, Pagnier I, Fournous G, Robert C, La Scola B, Raoult D, Colson P.

Virus Genes. 2014 Apr;48(2):218-23. doi: 10.1007/s11262-013-1016-x. Epub 2013 Dec 1.

PMID:
24293219
24.

First isolation of a giant virus from wild Hirudo medicinalis leech: Mimiviridae isolation in Hirudo medicinalis.

Boughalmi M, Pagnier I, Aherfi S, Colson P, Raoult D, La Scola B.

Viruses. 2013 Nov 27;5(12):2920-30. doi: 10.3390/v5122920.

25.

Alcohol disinfection procedure for isolating giant viruses from contaminated samples.

Slimani M, Pagnier I, Boughalmi M, Raoult D, La Scola B.

Intervirology. 2013;56(6):434-40. doi: 10.1159/000354566. Epub 2013 Oct 17.

26.

Shan virus: a new mimivirus isolated from the stool of a Tunisian patient with pneumonia.

Saadi H, Reteno DG, Colson P, Aherfi S, Minodier P, Pagnier I, Raoult D, La Scola B.

Intervirology. 2013;56(6):424-9. doi: 10.1159/000354564. Epub 2013 Oct 17.

27.

Real-time PCR systems targeting giant viruses of amoebae and their virophages.

Ngounga T, Pagnier I, Reteno DG, Raoult D, La Scola B, Colson P.

Intervirology. 2013;56(6):413-23. doi: 10.1159/000354563. Epub 2013 Oct 17.

28.

First isolation of a Marseillevirus in the Diptera Syrphidae Eristalis tenax.

Boughalmi M, Pagnier I, Aherfi S, Colson P, Raoult D, La Scola B.

Intervirology. 2013;56(6):386-94. doi: 10.1159/000354560. Epub 2013 Oct 17.

29.

A decade of improvements in Mimiviridae and Marseilleviridae isolation from amoeba.

Pagnier I, Reteno DG, Saadi H, Boughalmi M, Gaia M, Slimani M, Ngounga T, Bekliz M, Colson P, Raoult D, La Scola B.

Intervirology. 2013;56(6):354-63. doi: 10.1159/000354556. Epub 2013 Oct 17.

30.

Complete genome sequence of Cannes 8 virus, a new member of the proposed family "Marseilleviridae".

Aherfi S, Pagnier I, Fournous G, Raoult D, La Scola B, Colson P.

Virus Genes. 2013 Dec;47(3):550-5. doi: 10.1007/s11262-013-0965-4. Epub 2013 Aug 4.

PMID:
23912978
31.

Open membranes are the precursors for assembly of large DNA viruses.

Suárez C, Welsch S, Chlanda P, Hagen W, Hoppe S, Kolovou A, Pagnier I, Raoult D, Krijnse Locker J.

Cell Microbiol. 2013 Nov;15(11):1883-95. doi: 10.1111/cmi.12156. Epub 2013 Jul 5.

32.

First isolation of Mimivirus in a patient with pneumonia.

Saadi H, Pagnier I, Colson P, Cherif JK, Beji M, Boughalmi M, Azza S, Armstrong N, Robert C, Fournous G, La Scola B, Raoult D.

Clin Infect Dis. 2013 Aug;57(4):e127-34. doi: 10.1093/cid/cit354. Epub 2013 May 24.

PMID:
23709652
33.

Improving the identification of anaerobes in the clinical microbiology laboratory through MALDI-TOF mass spectrometry.

Barreau M, Pagnier I, La Scola B.

Anaerobe. 2013 Aug;22:123-5. doi: 10.1016/j.anaerobe.2013.04.011. Epub 2013 Apr 29.

PMID:
23639482
34.

Broad spectrum of mimiviridae virophage allows its isolation using a mimivirus reporter.

Gaia M, Pagnier I, Campocasso A, Fournous G, Raoult D, La Scola B.

PLoS One. 2013 Apr 15;8(4):e61912. doi: 10.1371/journal.pone.0061912. Print 2013.

35.

Amoebae as battlefields for bacteria, giant viruses, and virophages.

Slimani M, Pagnier I, Raoult D, La Scola B.

J Virol. 2013 Apr;87(8):4783-5. doi: 10.1128/JVI.02948-12. Epub 2013 Feb 6.

36.

High-throughput isolation of giant viruses of the Mimiviridae and Marseilleviridae families in the Tunisian environment.

Boughalmi M, Saadi H, Pagnier I, Colson P, Fournous G, Raoult D, La Scola B.

Environ Microbiol. 2013 Jul;15(7):2000-7. doi: 10.1111/1462-2920.12068. Epub 2013 Jan 9.

PMID:
23298151
37.

Related giant viruses in distant locations and different habitats: Acanthamoeba polyphaga moumouvirus represents a third lineage of the Mimiviridae that is close to the megavirus lineage.

Yoosuf N, Yutin N, Colson P, Shabalina SA, Pagnier I, Robert C, Azza S, Klose T, Wong J, Rossmann MG, La Scola B, Raoult D, Koonin EV.

Genome Biol Evol. 2012;4(12):1324-30. doi: 10.1093/gbe/evs109.

38.

Genome sequence of Afipia birgiae, a rare bacterium associated with Amoebae.

Pagnier I, Croce O, Robert C, Raoult D, La Scola B.

J Bacteriol. 2012 Dec;194(24):7018. doi: 10.1128/JB.01918-12.

39.

"Marseilleviridae", a new family of giant viruses infecting amoebae.

Colson P, Pagnier I, Yoosuf N, Fournous G, La Scola B, Raoult D.

Arch Virol. 2013 Apr;158(4):915-20. doi: 10.1007/s00705-012-1537-y. Epub 2012 Nov 29.

PMID:
23188494
40.

Genome sequence of Legionella tunisiensis strain LegM(T), a new Legionella species isolated from hypersaline lake water.

Pagnier I, Boughalmi M, Croce O, Robert C, Raoult D, La Scola B.

J Bacteriol. 2012 Nov;194(21):5978. doi: 10.1128/JB.01456-12.

41.

Microbial culturomics: paradigm shift in the human gut microbiome study.

Lagier JC, Armougom F, Million M, Hugon P, Pagnier I, Robert C, Bittar F, Fournous G, Gimenez G, Maraninchi M, Trape JF, Koonin EV, La Scola B, Raoult D.

Clin Microbiol Infect. 2012 Dec;18(12):1185-93. doi: 10.1111/1469-0691.12023. Epub 2012 Oct 3.

42.

Genome sequence of Reyranella massiliensis, a bacterium associated with amoebae.

Pagnier I, Croce O, Robert C, Raoult D, La Scola B.

J Bacteriol. 2012 Oct;194(20):5698.

43.

Mimivirus shows dramatic genome reduction after intraamoebal culture.

Boyer M, Azza S, Barrassi L, Klose T, Campocasso A, Pagnier I, Fournous G, Borg A, Robert C, Zhang X, Desnues C, Henrissat B, Rossmann MG, La Scola B, Raoult D.

Proc Natl Acad Sci U S A. 2011 Jun 21;108(25):10296-301. doi: 10.1073/pnas.1101118108. Epub 2011 Jun 6. Erratum in: Proc Natl Acad Sci U S A. 2011 Oct 11;108(41):17234.

44.

Isolation and characterization of Reyranella massiliensis gen. nov., sp. nov. from freshwater samples by using an amoeba co-culture procedure.

Pagnier I, Raoult D, La Scola B.

Int J Syst Evol Microbiol. 2011 Sep;61(Pt 9):2151-4. doi: 10.1099/ijs.0.025775-0. Epub 2010 Oct 1.

PMID:
20889765
45.

Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms.

Boyer M, Yutin N, Pagnier I, Barrassi L, Fournous G, Espinosa L, Robert C, Azza S, Sun S, Rossmann MG, Suzan-Monti M, La Scola B, Koonin EV, Raoult D.

Proc Natl Acad Sci U S A. 2009 Dec 22;106(51):21848-53. doi: 10.1073/pnas.0911354106. Epub 2009 Dec 9.

46.

Potentially pathogenic amoeba-associated microorganisms in cooling towers and their control.

Pagnier I, Merchat M, La Scola B.

Future Microbiol. 2009 Jun;4(5):615-29. doi: 10.2217/fmb.09.25. Review.

PMID:
19492970
47.

Emerging Mycobacteria spp. in cooling towers.

Pagnier I, Merchat M, Raoult D, La Scola B.

Emerg Infect Dis. 2009 Jan;15(1):121-2. doi: 10.3201/eid1501.071356. No abstract available.

48.

The virophage as a unique parasite of the giant mimivirus.

La Scola B, Desnues C, Pagnier I, Robert C, Barrassi L, Fournous G, Merchat M, Suzan-Monti M, Forterre P, Koonin E, Raoult D.

Nature. 2008 Sep 4;455(7209):100-4. doi: 10.1038/nature07218.

PMID:
18690211
49.

Yersinia massiliensis sp. nov., isolated from fresh water.

Merhej V, Adékambi T, Pagnier I, Raoult D, Drancourt M.

Int J Syst Evol Microbiol. 2008 Apr;58(Pt 4):779-84. doi: 10.1099/ijs.0.65219-0.

PMID:
18398169
50.

Isolation and identification of amoeba-resisting bacteria from water in human environment by using an Acanthamoeba polyphaga co-culture procedure.

Pagnier I, Raoult D, La Scola B.

Environ Microbiol. 2008 May;10(5):1135-44. doi: 10.1111/j.1462-2920.2007.01530.x. Epub 2008 Feb 12.

PMID:
18279351

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