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Items: 35

1.

Ozymandias: a biodiversity knowledge graph.

Page RDM.

PeerJ. 2019 Apr 8;7:e6739. doi: 10.7717/peerj.6739. eCollection 2019.

2.

Liberating links between datasets using lightweight data publishing: an example using plant names and the taxonomic literature.

Page R.

Biodivers Data J. 2018 Jul 23;(6):e27539. doi: 10.3897/BDJ.6.e27539. eCollection 2018.

3.

DNA barcoding and taxonomy: dark taxa and dark texts.

Page RD.

Philos Trans R Soc Lond B Biol Sci. 2016 Sep 5;371(1702). pii: 20150334. doi: 10.1098/rstb.2015.0334. Review.

4.

Surfacing the deep data of taxonomy.

Page RD.

Zookeys. 2016 Jan 7;(550):247-60. doi: 10.3897/zookeys.550.9293. eCollection 2016.

5.

Visualising Geophylogenies in Web Maps Using GeoJSON.

Page R.

PLoS Curr. 2015 Jun 23;7. pii: ecurrents.tol.8f3c6526c49b136b98ec28e00b570a1e. doi: 10.1371/currents.tol.8f3c6526c49b136b98ec28e00b570a1e.

6.

Community next steps for making globally unique identifiers work for biocollections data.

Guralnick RP, Cellinese N, Deck J, Pyle RL, Kunze J, Penev L, Walls R, Hagedorn G, Agosti D, Wieczorek J, Catapano T, Page RD.

Zookeys. 2015 Apr 6;(494):133-54. doi: 10.3897/zookeys.494.9352. eCollection 2015.

7.

Reweaving the tapestry: a supertree of birds.

Davis KE, Page RD.

PLoS Curr. 2014 Jun 9;6. pii: ecurrents.tol.c1af68dda7c999ed9f1e4b2d2df7a08e. doi: 10.1371/currents.tol.c1af68dda7c999ed9f1e4b2d2df7a08e.

8.

BioNames: linking taxonomy, texts, and trees.

Page RD.

PeerJ. 2013 Oct 29;1:e190. doi: 10.7717/peerj.190. eCollection 2013.

9.

A decadal view of biodiversity informatics: challenges and priorities.

Hardisty A, Roberts D; Biodiversity Informatics Community, Addink W, Aelterman B, Agosti D, Amaral-Zettler L, Ariño AH, Arvanitidis C, Backeljau T, Bailly N, Belbin L, Berendsohn W, Bertrand N, Caithness N, Campbell D, Cochrane G, Conruyt N, Culham A, Damgaard C, Davies N, Fady B, Faulwetter S, Feest A, Field D, Garnier E, Geser G, Gilbert J, Grosche, Grosser D, Hardisty A, Herbinet B, Hobern D, Jones A, de Jong Y, King D, Knapp S, Koivula H, Los W, Meyer C, Morris RA, Morrison N, Morse D, Obst M, Pafilis E, Page LM, Page R, Pape T, Parr C, Paton A, Patterson D, Paymal E, Penev L, Pollet M, Pyle R, von Raab-Straube E, Robert V, Roberts D, Robertson T, Rovellotti O, Saarenmaa H, Schalk P, Schaminee J, Schofield P, Sier A, Sierra S, Smith V, van Spronsen E, Thornton-Wood S, van Tienderen P, van Tol J, Tuama ÉÓ, Uetz P, Vaas L, Vignes Lebbe R, Vision T, Vu D, De Wever A, White R, Willis K, Young F.

BMC Ecol. 2013 Apr 15;13:16. doi: 10.1186/1472-6785-13-16. Review.

10.

Space, time, form: viewing the Tree of Life.

Page RD.

Trends Ecol Evol. 2012 Feb;27(2):113-20. doi: 10.1016/j.tree.2011.12.002. Epub 2011 Dec 29. Review.

PMID:
22209094
11.

Evolutionary informatics: unifying knowledge about the diversity of life.

Parr CS, Guralnick R, Cellinese N, Page RD.

Trends Ecol Evol. 2012 Feb;27(2):94-103. doi: 10.1016/j.tree.2011.11.001. Epub 2011 Dec 10. Review. Erratum in: Trends Ecol Evol. 2012 Jul;27(7):414.

PMID:
22154516
12.

Aggregating, tagging and integrating biodiversity research.

Mindell DP, Fisher BL, Roopnarine P, Eisen J, Mace GM, Page RD, Pyle RL.

PLoS One. 2011;6(8):e19491. doi: 10.1371/journal.pone.0019491. Epub 2011 Aug 1. No abstract available.

13.

Extracting scientific articles from a large digital archive: BioStor and the Biodiversity Heritage Library.

Page RD.

BMC Bioinformatics. 2011 May 23;12:187. doi: 10.1186/1471-2105-12-187.

14.

Linking NCBI to Wikipedia: a wiki-based approach.

Page RD.

PLoS Curr. 2011 Mar 31;3:RRN1228. doi: 10.1371/currents.RRN1228.

15.

bioGUID: resolving, discovering, and minting identifiers for biodiversity informatics.

Page RD.

BMC Bioinformatics. 2009 Nov 10;10 Suppl 14:S5. doi: 10.1186/1471-2105-10-S14-S5.

16.

Visualizing phylogenetic trees using TreeView.

Page RD.

Curr Protoc Bioinformatics. 2002 Aug;Chapter 6:Unit 6.2. doi: 10.1002/0471250953.bi0602s01.

PMID:
18792942
17.

Biodiversity informatics: the challenge of linking data and the role of shared identifiers.

Page RD.

Brief Bioinform. 2008 Sep;9(5):345-54. doi: 10.1093/bib/bbn022. Epub 2008 Apr 29. Review.

PMID:
18445641
18.

Introduction to inferring evolutionary relationships.

Page RD.

Curr Protoc Bioinformatics. 2003 Feb;Chapter 6:Unit 6.1. doi: 10.1002/0471250953.bi0601s00.

PMID:
18428703
19.

Introduction to comparing large sequence sets.

Page RD.

Curr Protoc Bioinformatics. 2003 Feb;Chapter 10:Unit 10.1. doi: 10.1002/0471250953.bi1001s00.

PMID:
18428691
20.

LSID Tester, a tool for testing Life Science Identifier resolution services.

Page RD.

Source Code Biol Med. 2008 Feb 18;3:2. doi: 10.1186/1751-0473-3-2.

21.

The expanding contributions of systematic biology.

Page RD, Sullivan J.

Syst Biol. 2008 Feb;57(1):1-3. doi: 10.1080/10635150701856671. No abstract available.

PMID:
18188785
22.

Comparative tests of ectoparasite species richness in seabirds.

Hughes J, Page RD.

BMC Evol Biol. 2007 Nov 15;7:227.

23.
24.

Multiple cophylogenetic analyses reveal frequent cospeciation between pelecaniform birds and Pectinopygus lice.

Hughes J, Kennedy M, Johnson KP, Palma RL, Page RD.

Syst Biol. 2007 Apr;56(2):232-51.

PMID:
17464880
25.

The shape of human gene family phylogenies.

Cotton JA, Page RD.

BMC Evol Biol. 2006 Aug 29;6:66.

26.

An edit script for taxonomic classifications.

Page RD, Valiente G.

BMC Bioinformatics. 2005 Aug 25;6:208.

27.
28.

Rates and patterns of gene duplication and loss in the human genome.

Cotton JA, Page RD.

Proc Biol Sci. 2005 Feb 7;272(1560):277-83.

29.

Supertree algorithms for ancestral divergence dates and nested taxa.

Semple C, Daniel P, Hordijk W, Page RD, Steel M.

Bioinformatics. 2004 Oct 12;20(15):2355-60. Epub 2004 Apr 8.

PMID:
15073021
30.

Phylogeny of "Philoceanus complex" seabird lice (Phthiraptera: Ischnocera) inferred from mitochondrial DNA sequences.

Page RD, Cruickshank RH, Dickens M, Furness RW, Kennedy M, Palma RL, Smith VS.

Mol Phylogenet Evol. 2004 Mar;30(3):633-52.

PMID:
15012944
31.
32.

Gene tree parsimony vs uninode coding for phylogenetic reconstruction.

Cotton JA, Page RD.

Mol Phylogenet Evol. 2003 Nov;29(2):298-308.

PMID:
13678685
33.

Dramatically elevated rate of mitochondrial substitution in lice (Insecta: Phthiraptera).

Johnson KP, Cruickshank RH, Adams RJ, Smith VS, Page RD, Clayton DH.

Mol Phylogenet Evol. 2003 Feb;26(2):231-42.

PMID:
12565034
34.

When do parasites fail to speciate in response to host speciation?

Johnson KP, Adams RJ, Page RD, Clayton DH.

Syst Biol. 2003 Feb;52(1):37-47.

PMID:
12554438
35.

Going nuclear: gene family evolution and vertebrate phylogeny reconciled.

Cotton JA, Page RD.

Proc Biol Sci. 2002 Aug 7;269(1500):1555-61.

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