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Items: 1 to 50 of 156

1.

Lenalidomide maintenance treatment after imatinib discontinuation: results of a phase 1 clinical trial in chronic myeloid leukaemia.

Ross DM, Pagani IS, Irani YD, Clarson J, Leclercq T, Dang P, McLean J, Saunders VA, Carne L, Reynolds J, Ritchie DS, White DL, Branford S, Hughes TP, Yong ASM.

Br J Haematol. 2019 Aug;186(3):e56-e60. doi: 10.1111/bjh.15894. Epub 2019 Mar 27. No abstract available.

PMID:
30916385
2.

Long-term treatment-free remission of chronic myeloid leukemia with falling levels of residual leukemic cells.

Ross DM, Pagani IS, Shanmuganathan N, Kok CH, Seymour JF, Mills AK, Filshie RJ, Arthur CK, Dang P, Saunders VA, Braley J, Yong AS, Yeung DT, White DL, Grigg AP, Schwarer AP, Branford S, Hughes TP; Australasian Leukaemia and Lymphoma Group (ALLG).

Leukemia. 2018 Dec;32(12):2572-2579. doi: 10.1038/s41375-018-0264-0. Epub 2018 Oct 12.

PMID:
30315232
3.

Zika Virus Replication in Dorsal Root Ganglia Explants from Interferon Receptor1 Knockout Mice Causes Myelin Degeneration.

Volpi VG, Pagani I, Ghezzi S, Iannacone M, D'Antonio M, Vicenzi E.

Sci Rep. 2018 Jul 5;8(1):10166. doi: 10.1038/s41598-018-28257-5.

4.

BCR-ABL1 genomic DNA PCR response kinetics during first-line imatinib treatment of chronic myeloid leukemia.

Pagani IS, Dang P, Kommers IO, Goyne JM, Nicola M, Saunders VA, Braley J, White DL, Yeung DT, Branford S, Hughes TP, Ross DM.

Haematologica. 2018 Dec;103(12):2026-2032. doi: 10.3324/haematol.2018.189787. Epub 2018 Jul 5.

5.

Subverting the mechanisms of cell death: flavivirus manipulation of host cell responses to infection.

Vicenzi E, Pagani I, Ghezzi S, Taylor SL, Rudd TR, Lima MA, Skidmore MA, Yates EA.

Biochem Soc Trans. 2018 Jun 19;46(3):609-617. doi: 10.1042/BST20170399. Epub 2018 Apr 20. Review.

PMID:
29678952
6.

Mutations Conferring Increased Sensitivity to Tripartite Motif 22 Restriction Accumulated Progressively in the Nucleoprotein of Seasonal Influenza A (H1N1) Viruses between 1918 and 2009.

Pagani I, Di Pietro A, Oteiza A, Ghitti M, Mechti N, Naffakh N, Vicenzi E.

mSphere. 2018 Apr 4;3(2). pii: e00110-18. doi: 10.1128/mSphere.00110-18. Print 2018 Apr 25.

7.

A Human Bi-specific Antibody against Zika Virus with High Therapeutic Potential.

Wang J, Bardelli M, Espinosa DA, Pedotti M, Ng TS, Bianchi S, Simonelli L, Lim EXY, Foglierini M, Zatta F, Jaconi S, Beltramello M, Cameroni E, Fibriansah G, Shi J, Barca T, Pagani I, Rubio A, Broccoli V, Vicenzi E, Graham V, Pullan S, Dowall S, Hewson R, Jurt S, Zerbe O, Stettler K, Lanzavecchia A, Sallusto F, Cavalli A, Harris E, Lok SM, Varani L, Corti D.

Cell. 2017 Sep 21;171(1):229-241.e15. doi: 10.1016/j.cell.2017.09.002.

8.

A Method for Next-Generation Sequencing of Paired Diagnostic and Remission Samples to Detect Mitochondrial DNA Mutations Associated with Leukemia.

Pagani IS, Kok CH, Saunders VA, Van der Hoek MB, Heatley SL, Schwarer AP, Hahn CN, Hughes TP, White DL, Ross DM.

J Mol Diagn. 2017 Sep;19(5):711-721. doi: 10.1016/j.jmoldx.2017.05.009. Epub 2017 Jul 18.

PMID:
28732215
9.

5-Hydroxytyrosol inhibits HIV-1 replication in primary cells of the lower and upper female reproductive tract.

Saba E, Panina-Bordignon P, Pagani I, Origoni M, Candiani M, Doglioni C, Taccagni G, Ghezzi S, Alcami J, Vicenzi E, Poli G.

Antiviral Res. 2017 Jun;142:16-20. doi: 10.1016/j.antiviral.2017.03.003. Epub 2017 Mar 7.

PMID:
28286236
10.

Human Endometrial Stromal Cells Are Highly Permissive To Productive Infection by Zika Virus.

Pagani I, Ghezzi S, Ulisse A, Rubio A, Turrini F, Garavaglia E, Candiani M, Castilletti C, Ippolito G, Poli G, Broccoli V, Panina-Bordignon P, Vicenzi E.

Sci Rep. 2017 Mar 10;7:44286. doi: 10.1038/srep44286.

11.

Heparin prevents Zika virus induced-cytopathic effects in human neural progenitor cells.

Ghezzi S, Cooper L, Rubio A, Pagani I, Capobianchi MR, Ippolito G, Pelletier J, Meneghetti MCZ, Lima MA, Skidmore MA, Broccoli V, Yates EA, Vicenzi E.

Antiviral Res. 2017 Apr;140:13-17. doi: 10.1016/j.antiviral.2016.12.023. Epub 2017 Jan 5.

PMID:
28063994
12.

Permanent Draft Genome Sequence of Nocardia sp. BMG111209, an Actinobacterium Isolated from Nodules of Casuarina glauca.

Ghodhbane-Gtari F, Beauchemin N, Gueddou A, Hezbri K, Ktari A, Louati M, Nouioui I, Chen A, Huntemann M, Ivanova N, Kyrpides N, Markowitz V, Mavrommatis K, Pagani I, Sen A, Wall L, Woyke T, Gtari M, Tisa LS.

Genome Announc. 2016 Aug 4;4(4). pii: e00770-16. doi: 10.1128/genomeA.00770-16.

13.

Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca.

Ghodhbane-Gtari F, Beauchemin N, Louati M, Nouioui I, Ktari A, Hezbri K, Gueddou A, Chen A, Huntemann M, Ivanova N, Kyrpides N, Markowitz V, Mavrommatis K, Pagani I, Sen A, Wall L, Woyke T, Gtari M, Tisa LS.

Genome Announc. 2016 Aug 4;4(4). pii: e00799-16. doi: 10.1128/genomeA.00799-16.

14.

Zika Virus: a re-emerging pathogen with rapidly evolving public health implications.

Turrini F, Ghezzi S, Pagani I, Poli G, Vicenzi E.

New Microbiol. 2016 Apr;39(2):86-90. No abstract available.

15.

Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4.

Shetty AR, de Gannes V, Obi CC, Lucas S, Lapidus A, Cheng JF, Goodwin LA, Pitluck S, Peters L, Mikhailova N, Teshima H, Han C, Tapia R, Land M, Hauser LJ, Kyrpides N, Ivanova N, Pagani I, Chain PS, Denef VJ, Woyke T, Hickey WJ.

Stand Genomic Sci. 2015 Aug 15;10:55. doi: 10.1186/s40793-015-0041-x. eCollection 2015.

16.

Draft Genome Sequence of Frankia sp. Strain DC12, an Atypical, Noninfective, Ineffective Isolate from Datisca cannabina.

Tisa LS, Beauchemin N, Cantor MN, Furnholm T, Ghodhbane-Gtari F, Goodwin L, Copeland A, Gtari M, Huntemann M, Ivanova N, Kyrpides N, Markowitz V, Mavrommatis K, Mikhailova N, Nouioui I, Oshone R, Ovchinnikova G, Pagani I, Palaniappan K, Pati A, Sen A, Shapiro N, Szeto E, Wall L, Wishart J, Woyke T.

Genome Announc. 2015 Aug 6;3(4). pii: e00889-15. doi: 10.1128/genomeA.00889-15.

17.

High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater.

Ramsay BD, Hwang C, Woo HL, Carroll SL, Lucas S, Han J, Lapidus AL, Cheng JF, Goodwin LA, Pitluck S, Peters L, Chertkov O, Held B, Detter JC, Han CS, Tapia R, Land ML, Hauser LJ, Kyrpides NC, Ivanova NN, Mikhailova N, Pagani I, Woyke T, Arkin AP, Dehal P, Chivian D, Criddle CS, Wu W, Chakraborty R, Hazen TC, Fields MW.

Genome Announc. 2015 Mar 12;3(2). pii: e00092-15. doi: 10.1128/genomeA.00092-15.

18.

gDNA Q-PCR for clinical monitoring of CML.

Porta G, Pagani IS, Pirrone C.

Cell Cycle. 2015;14(23):3659-60. doi: 10.1080/15384101.2015.1006053. No abstract available.

19.

Genomic quantitative real-time PCR proves residual disease positivity in more than 30% samples with negative mRNA-based qRT-PCR in Chronic Myeloid Leukemia.

Pagani IS, Spinelli O, Mattarucchi E, Pirrone C, Pigni D, Amelotti E, Lilliu S, Boroni C, Intermesoli T, Giussani U, Caimi L, Bolda F, Baffelli R, Candi E, Pasquali F, Lo Curto F, Lanfranchi A, Porta F, Rambaldi A, Porta G.

Oncoscience. 2014 Jul 23;1(7):510-21. eCollection 2014.

20.

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification.

Reddy TB, Thomas AD, Stamatis D, Bertsch J, Isbandi M, Jansson J, Mallajosyula J, Pagani I, Lobos EA, Kyrpides NC.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1099-106. doi: 10.1093/nar/gku950. Epub 2014 Oct 27.

21.

Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California.

Hawley ER, Piao H, Scott NM, Malfatti S, Pagani I, Huntemann M, Chen A, Glavina Del Rio T, Foster B, Copeland A, Jansson J, Pati A, Tringe S, Gilbert JA, Lorenson TD, Hess M.

Stand Genomic Sci. 2014 Jan 2;9(3):1259-74. doi: 10.4056/sigs.5029016. eCollection 2014 Jun 15.

22.

Genome sequence of the Thermotoga thermarum type strain (LA3(T)) from an African solfataric spring.

Göker M, Spring S, Scheuner C, Anderson I, Zeytun A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A.

Stand Genomic Sci. 2014 May 15;9(3):1105-17. doi: 10.4056/sigs.3016383. eCollection 2014 Jun 15.

23.

Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia.

Göker M, Lu M, Fiebig A, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Mayilraj S, Rohde M, Detter JC, Bunk B, Spring S, Wirth R, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP.

Stand Genomic Sci. 2014 Mar 15;9(3):1076-88. doi: 10.4056/sigs.5138968. eCollection 2014 Jun 15.

24.

Genome sequence of the Listia angolensis microsymbiont Microvirga lotononidis strain WSM3557(T.).

Reeve W, Ardley J, Tian R, De Meyer S, Terpolilli J, Melino V, Tiwari R, Yates R, O'Hara G, Howieson J, Ninawi M, Zhang X, Bruce D, Detter C, Tapia R, Han C, Wei CL, Huntemann M, Han J, Chen IM, Mavromatis K, Markowitz V, Szeto E, Ivanova N, Pagani I, Pati A, Goodwin L, Woyke T, Kyrpides N.

Stand Genomic Sci. 2013 Dec 31;9(3):540-50. doi: 10.4056/sigs.4548266. eCollection 2014 Jun 15.

25.

Genome sequence of Ensifer medicae strain WSM1115; an acid-tolerant Medicago-nodulating microsymbiont from Samothraki, Greece.

Reeve W, Ballard R, Howieson J, Drew E, Tian R, Bräu L, Munk C, Davenport K, Chain P, Goodwin L, Pagani I, Huntemann M, Mavrommatis K, Pati A, Markowitz V, Ivanova N, Woyke T, Kyrpides N.

Stand Genomic Sci. 2013 Dec 31;9(3):514-26. doi: 10.4056/sigs.4938652. eCollection 2014 Jun 15.

26.

Genome sequence of the Lebeckia ambigua-nodulating "Burkholderia sprentiae" strain WSM5005(T.).

Reeve W, De Meyer S, Terpolilli J, Melino V, Ardley J, Rui T, Tiwari R, Howieson J, Yates R, O'Hara G, Lu M, Bruce D, Detter C, Tapia R, Han C, Wei CL, Huntemann M, Han J, Chen IM, Mavromatis K, Markowitz V, Szeto E, Ivanova N, Mikhailova N, Ovchinnikova G, Pagani I, Pati A, Goodwin L, Peters L, Pitluck S, Woyke T, Kyrpides N.

Stand Genomic Sci. 2013 Dec 15;9(2):385-94. doi: 10.4056/sigs.4558268. eCollection 2013 Dec 20.

27.

Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production.

Khanna N, Ghosh AK, Huntemann M, Deshpande S, Han J, Chen A, Kyrpides N, Mavrommatis K, Szeto E, Markowitz V, Ivanova N, Pagani I, Pati A, Pitluck S, Nolan M, Woyke T, Teshima H, Chertkov O, Daligault H, Davenport K, Gu W, Munk C, Zhang X, Bruce D, Detter C, Xu Y, Quintana B, Reitenga K, Kunde Y, Green L, Erkkila T, Han C, Brambilla EM, Lang E, Klenk HP, Goodwin L, Chain P, Das D.

Stand Genomic Sci. 2013 Dec 15;9(2):359-69. doi: 10.4056/sigs.4348035. eCollection 2013 Dec 20.

28.

Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58.

Galardini M, Bazzicalupo M, Biondi E, Brambilla E, Brilli M, Bruce D, Chain P, Chen A, Daligault H, Davenport KW, Deshpande S, Detter JC, Goodwin LA, Han C, Han J, Huntemann M, Ivanova N, Klenk HP, Kyrpides NC, Markowitz V, Mavrommatis K, Mocali S, Nolan M, Pagani I, Pati A, Pini F, Pitluck S, Spini G, Szeto E, Teshima H, Woyke T, Mengoni A.

Stand Genomic Sci. 2013 Dec 15;9(2):325-33. doi: 10.4056/sigs.3797438. eCollection 2013 Dec 20.

29.

Genome sequence of the Trifolium rueppellianum -nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012.

Reeve W, Melino V, Ardley J, Tian R, De Meyer S, Terpolilli J, Tiwari R, Yates R, O'Hara G, Howieson J, Ninawi M, Held B, Bruce D, Detter C, Tapia R, Han C, Wei CL, Huntemann M, Han J, Chen IM, Mavromatis K, Markowitz V, Szeto E, Ivanova N, Mikhailova N, Pagani I, Pati A, Goodwin L, Woyke T, Kyrpides N.

Stand Genomic Sci. 2013 Dec 15;9(2):283-93. doi: 10.4056/sigs.4528262. eCollection 2013 Dec 20.

30.

Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417.

Reeve W, Terpolilli J, Melino V, Ardley J, Tian R, De Meyer S, Tiwari R, Yates R, O'Hara G, Howieson J, Ninawi M, Teshima H, Bruce D, Detter C, Tapia R, Han C, Wei CL, Huntemann M, Han J, Chen IM, Mavrommatis K, Markowitz V, Ivanova N, Ovchinnikova G, Pagani I, Pati A, Goodwin L, Peters L, Woyke T, Kyrpides N.

Stand Genomic Sci. 2013 Dec 15;9(2):273-82. doi: 10.4056/sigs.4518260. eCollection 2013 Dec 20.

31.

Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597.

Reeve W, Terpolilli J, Melino V, Ardley J, Tian R, De Meyer S, Tiwari R, Yates R, O'Hara G, Howieson J, Ninawi M, Held B, Bruce D, Detter C, Tapia R, Han C, Wei CL, Huntemann M, Han J, Chen IM, Mavromatis K, Markowitz V, Ivanova N, Ovchinnikova G, Pagani I, Pati A, Goodwin L, Woyke T, Kyrpides N.

Stand Genomic Sci. 2013 Dec 15;9(2):264-72. doi: 10.4056/sigs.4508258. eCollection 2013 Dec 20.

32.

Genome sequence of the Ornithopus/Lupinus-nodulating Bradyrhizobium sp. strain WSM471.

Reeve W, De Meyer S, Terpolilli J, Melino V, Ardley J, Tian R, Tiwari R, Howieson J, Yates R, O'Hara G, Ninawi M, Lu M, Bruce D, Detter C, Tapia R, Han C, Wei CL, Huntemann M, Han J, Chen IM, Mavromatis K, Markowitz V, Ivanova N, Pagani I, Pati A, Goodwin L, Woyke T, Kyrpides N.

Stand Genomic Sci. 2013 Dec 15;9(2):254-63. doi: 10.4056/sigs.4498256. eCollection 2013 Dec 20.

33.

Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1.

Reeve W, Tian R, De Meyer S, Melino V, Terpolilli J, Ardley J, Tiwari R, Howieson J, Yates R, O'Hara G, Ninawi M, Teshima H, Bruce D, Detter C, Tapia R, Han C, Wei CL, Huntemann M, Han J, Chen IM, Mavromatis K, Markowitz V, Ivanova N, Ovchinnikova G, Pagani I, Pati A, Goodwin L, Pitluck S, Woyke T, Kyrpides N.

Stand Genomic Sci. 2013 Dec 15;9(2):243-53. doi: 10.4056/sigs.4488254. eCollection 2013 Dec 20.

34.

Metagenomes from two microbial consortia associated with Santa Barbara seep oil.

Hawley ER, Malfatti SA, Pagani I, Huntemann M, Chen A, Foster B, Copeland A, del Rio TG, Pati A, Jansson JR, Gilbert JA, Tringe SG, Lorenson TD, Hess M.

Mar Genomics. 2014 Dec;18 Pt B:97-9. doi: 10.1016/j.margen.2014.06.003. Epub 2014 Jun 20.

PMID:
24958360
35.

Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl.

Anderson I, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Rohde M, Lang E, Detter JC, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP.

Stand Genomic Sci. 2013 Oct 2;9(1):83-92. doi: 10.4056/sigs.4338002. eCollection 2013 Oct 16.

36.

Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio.

Palaniappan K, Meier-Kolthoff JP, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Rohde M, Mayilraj S, Spring S, Detter JC, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T.

Stand Genomic Sci. 2013 Oct 2;9(1):57-70. doi: 10.4056/sigs.4237901. eCollection 2013 Oct 16.

37.

Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4.

Neupane S, Goodwin LA, Högberg N, Kyrpides NC, Alström S, Bruce D, Quintana B, Munk C, Daligault H, Teshima H, Davenport K, Reitenga K, Green L, Chain P, Erkkila T, Gu W, Zhang X, Xu Y, Kunde Y, Chertkov O, Han J, Han C, Detter JC, Ivanova N, Pati A, Chen A, Szeto E, Mavromatis K, Huntemann M, Nolan M, Pitluck S, Deshpande S, Markowitz V, Pagani I, Klenk HP, Woyke T, Finlay RD.

Stand Genomic Sci. 2013 Jul 30;8(3):441-9. doi: 10.4056/sigs.4027757. eCollection 2013 Jul 30.

38.

Complete genome sequence of Dehalobacter restrictus PER-K23(T.).

Kruse T, Maillard J, Goodwin L, Woyke T, Teshima H, Bruce D, Detter C, Tapia R, Han C, Huntemann M, Wei CL, Han J, Chen A, Kyrpides N, Szeto E, Markowitz V, Ivanova N, Pagani I, Pati A, Pitluck S, Nolan M, Holliger C, Smidt H.

Stand Genomic Sci. 2013 Jul 30;8(3):375-88. doi: 10.4056/sigs.3787426. eCollection 2013 Jul 30.

39.

Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae.

Scheuner C, Tindall BJ, Lu M, Nolan M, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Huntemann M, Liolios K, Pagani I, Mavromatis K, Ivanova N, Pati A, Chen A, Palaniappan K, Jeffries CD, Hauser L, Land M, Mwirichia R, Rohde M, Abt B, Detter JC, Woyke T, Eisen JA, Markowitz V, Hugenholtz P, Göker M, Kyrpides NC, Klenk HP.

Stand Genomic Sci. 2014 Dec 8;9:10. doi: 10.1186/1944-3277-9-10. eCollection 2014.

40.

Expression of VEGF-A, Otx homeobox and p53 family genes in proliferative vitreoretinopathy.

Azzolini C, Pagani IS, Pirrone C, Borroni D, Donati S, Al Oum M, Pigni D, Chiaravalli AM, Vinciguerra R, Simonelli F, Porta G.

Mediators Inflamm. 2013;2013:857380. doi: 10.1155/2013/857380. Epub 2013 Oct 21.

41.

IMG/M 4 version of the integrated metagenome comparative analysis system.

Markowitz VM, Chen IM, Chu K, Szeto E, Palaniappan K, Pillay M, Ratner A, Huang J, Pagani I, Tringe S, Huntemann M, Billis K, Varghese N, Tennessen K, Mavromatis K, Pati A, Ivanova NN, Kyrpides NC.

Nucleic Acids Res. 2014 Jan;42(Database issue):D568-73. doi: 10.1093/nar/gkt919. Epub 2013 Oct 16.

42.

Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations.

Bollmann A, Sedlacek CJ, Norton J, Laanbroek HJ, Suwa Y, Stein LY, Klotz MG, Arp D, Sayavedra-Soto L, Lu M, Bruce D, Detter C, Tapia R, Han J, Woyke T, Lucas SM, Pitluck S, Pennacchio L, Nolan M, Land ML, Huntemann M, Deshpande S, Han C, Chen A, Kyrpides N, Mavromatis K, Markowitz V, Szeto E, Ivanova N, Mikhailova N, Pagani I, Pati A, Peters L, Ovchinnikova G, Goodwin LA.

Stand Genomic Sci. 2013 Feb 25;7(3):469-82. doi: 10.4056/sigs.3517166. eCollection 2013.

43.

Thermus oshimai JL-2 and T. thermophilus JL-18 genome analysis illuminates pathways for carbon, nitrogen, and sulfur cycling.

Murugapiran SK, Huntemann M, Wei CL, Han J, Detter JC, Han C, Erkkila TH, Teshima H, Chen A, Kyrpides N, Mavrommatis K, Markowitz V, Szeto E, Ivanova N, Pagani I, Pati A, Goodwin L, Peters L, Pitluck S, Lam J, McDonald AI, Dodsworth JA, Woyke T, Hedlund BP.

Stand Genomic Sci. 2013 Feb 25;7(3):449-68. doi: 10.4056/sigs.3667269. eCollection 2013.

44.

Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H(T)), and emendation of the species Turneriella parva.

Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Land M, Pan C, Rohde M, Gronow S, Göker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Woyke T, Kyrpides NC, Klenk HP.

Stand Genomic Sci. 2013 May 25;8(2):228-38. doi: 10.4056/sigs.3617113. eCollection 2013.

45.

Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055(T)).

Huntemann M, Stackebrandt E, Held B, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Rohde M, Gronow S, Göker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Woyke T, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A.

Stand Genomic Sci. 2013 May 25;8(2):177-87. doi: 10.4056/sigs.3637201. eCollection 2013.

46.

Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692(T)) from the alkaline Lake Magadi in the East African Rift.

Liolos K, Abt B, Scheuner C, Teshima H, Held B, Lapidus A, Nolan M, Lucas S, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Land M, Rohde M, Tindall BJ, Detter JC, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Woyke T, Klenk HP, Kyrpides NC.

Stand Genomic Sci. 2013 May 20;8(2):165-76. doi: 10.4056/sigs.3607108. eCollection 2013.

47.

Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema.

Abt B, Göker M, Scheuner C, Han C, Lu M, Misra M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Jeffries CD, Rohde M, Spring S, Gronow S, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Woyke T, Klenk HP.

Stand Genomic Sci. 2013 Apr 15;8(1):88-105. doi: 10.4056/sigs.3096473. eCollection 2013 Apr 15.

48.

Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA(T)).

Mavromatis K, Stackebrandt E, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Land M, Rohde M, Spring S, Göker M, Woyke T, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC.

Stand Genomic Sci. 2013 Apr 15;8(1):47-57. doi: 10.4056/sigs.3547050. eCollection 2013 Apr 15.

49.

High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)).

Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Han C, Cheng JF, Tapia R, Goodwin LA, Bruce D, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Rohde M, Tindall BJ, Göker M, Woyke T, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC.

Stand Genomic Sci. 2013 Apr 15;8(1):37-46. doi: 10.4056/sigs.3537045. eCollection 2013 Apr 15.

50.

Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)).

Mavromatis K, Stackebrandt E, Munk C, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Rohde M, Gronow S, Göker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T.

Stand Genomic Sci. 2013 Apr 15;8(1):26-36. doi: 10.4056/sigs.3527032. eCollection 2013 Apr 15.

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