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Within-host multiplication and speed of colonization as infection traits associated with plant virus vertical transmission.

Cobos A, Montes N, López-Herranz M, Gil-Valle M, Pagán I.

J Virol. 2019 Sep 11. pii: JVI.01078-19. doi: 10.1128/JVI.01078-19. [Epub ahead of print]


Light Intensity Modulates the Efficiency of Virus Seed Transmission through Modifications of Plant Tolerance.

Montes N, Pagán I.

Plants (Basel). 2019 Aug 27;8(9). pii: E304. doi: 10.3390/plants8090304.


Expression of LAIR-1 (CD305) on Human Blood Monocytes as a Marker of Hepatic Cirrhosis Progression.

Martínez-Esparza M, Ruiz-Alcaraz AJ, Carmona-Martínez V, Fernández-Fernández MD, Antón G, Muñoz-Tornero M, Lencina M, Pagán I, de la Peña J, García-Peñarrubia P.

J Immunol Res. 2019 Mar 24;2019:2974753. doi: 10.1155/2019/2974753. eCollection 2019.


Nest sites as a key resource for population persistence: A case study modelling nest occupancy under forestry practices.

Jiménez-Franco MV, Martínez-Fernández J, Martínez JE, Pagán I, Calvo JF, Esteve MA.

PLoS One. 2018 Oct 11;13(10):e0205404. doi: 10.1371/journal.pone.0205404. eCollection 2018.


The diversity, evolution and epidemiology of plant viruses: A phylogenetic view.

Pagán I.

Infect Genet Evol. 2018 Nov;65:187-199. doi: 10.1016/j.meegid.2018.07.033. Epub 2018 Jul 25. Review.


Tolerance to Plant Pathogens: Theory and Experimental Evidence.

Pagán I, García-Arenal F.

Int J Mol Sci. 2018 Mar 11;19(3). pii: E810. doi: 10.3390/ijms19030810. Review.


Effect of HIV/HCV Co-Infection on the Protease Evolution of HIV-1B: A Pilot Study in a Pediatric Population.

Domínguez-Rodríguez S, Rojas P, Fernández McPhee C, Pagán I, Navarro ML, Ramos JT, Holguín Á.

Sci Rep. 2018 Feb 5;8(1):2347. doi: 10.1038/s41598-018-19312-2.


Virulence evolution of a sterilizing plant virus: Tuning multiplication and resource exploitation.

Vijayan V, López-González S, Sánchez F, Ponz F, Pagán I.

Virus Evol. 2017 Nov 6;3(2):vex033. doi: 10.1093/ve/vex033. eCollection 2017 Jul.


The impact of host genetic diversity on virus evolution and emergence.

Rodríguez-Nevado C, Lam TT, Holmes EC, Pagán I.

Ecol Lett. 2018 Feb;21(2):253-263. doi: 10.1111/ele.12890. Epub 2017 Dec 5.


Ecological Factors Affecting Infection Risk and Population Genetic Diversity of a Novel Potyvirus in Its Native Wild Ecosystem.

Rodríguez-Nevado C, Montes N, Pagán I.

Front Plant Sci. 2017 Nov 14;8:1958. doi: 10.3389/fpls.2017.01958. eCollection 2017.


Impact of Clinical Parameters in the Intrahost Evolution of HIV-1 Subtype B in Pediatric Patients: A Machine Learning Approach.

Rojas Sánchez P, Cobos A, Navaro M, Ramos JT, Pagán I, Holguín Á.

Genome Biol Evol. 2017 Oct 1;9(10):2715-2726. doi: 10.1093/gbe/evx193.


Effective tolerance based on resource reallocation is a virus-specific defence in Arabidopsis thaliana.

Shukla A, Pagán I, García-Arenal F.

Mol Plant Pathol. 2018 Jun;19(6):1454-1465. doi: 10.1111/mpp.12629. Epub 2018 Jan 30.


Pleiotropic Effects of Resistance-Breaking Mutations on Particle Stability Provide Insight into Life History Evolution of a Plant RNA Virus.

Bera S, Moreno-Pérez MG, García-Figuera S, Pagán I, Fraile A, Pacios LF, García-Arenal F.

J Virol. 2017 Aug 24;91(18). pii: e00435-17. doi: 10.1128/JVI.00435-17. Print 2017 Sep 15.


Environmental heterogeneity and the evolution of plant-virus interactions: Viruses in wild pepper populations.

Fraile A, McLeish MJ, Pagán I, González-Jara P, Piñero D, García-Arenal F.

Virus Res. 2017 Sep 15;241:68-76. doi: 10.1016/j.virusres.2017.05.015. Epub 2017 May 26. Review.


Clinical Determinants of HIV-1B Between-Host Evolution and their Association with Drug Resistance in Pediatric Patients.

Pagán I, Rojas P, Ramos JT, Holguín Á.

PLoS One. 2016 Dec 1;11(12):e0167383. doi: 10.1371/journal.pone.0167383. eCollection 2016.


Clinical outcomes and antibiotic susceptibilities of Staphylococcus aureus endophthalmitis.

Huz JI, Mukkamala K, Pagan IR, Ritterband D, Shah M, Gentile RC, Engelbert M.

Graefes Arch Clin Exp Ophthalmol. 2017 Apr;255(4):651-656. doi: 10.1007/s00417-016-3504-x. Epub 2016 Oct 19.


Environment and host genotype determine the outcome of a plant-virus interaction: from antagonism to mutualism.

Hily JM, Poulicard N, Mora MÁ, Pagán I, García-Arenal F.

New Phytol. 2016 Jan;209(2):812-22. doi: 10.1111/nph.13631. Epub 2015 Sep 14.


Molecular epidemiology suggests Venezuela as the origin of the dengue outbreak in Madeira, Portugal in 2012-2013.

Franco L, Pagan I, Serre Del Cor N, Schunk M, Neumayr A, Molero F, Potente A, Hatz C, Wilder-Smith A, Sánchez-Seco MP, Tenorio A.

Clin Microbiol Infect. 2015 Jul;21(7):713.e5-8. doi: 10.1016/j.cmi.2015.03.016. Epub 2015 Apr 2.


Measles virus genetic evolution throughout an imported epidemic outbreak in a highly vaccinated population.

Muñoz-Alía MÁ, Fernández-Muñoz R, Casasnovas JM, Porras-Mansilla R, Serrano-Pardo Á, Pagán I, Ordobás M, Ramírez R, Celma ML.

Virus Res. 2015 Jan 22;196:122-7. doi: 10.1016/j.virusres.2014.11.015. Epub 2014 Nov 20.


Vertical transmission selects for reduced virulence in a plant virus and for increased resistance in the host.

Pagán I, Montes N, Milgroom MG, García-Arenal F.

PLoS Pathog. 2014 Jul 31;10(7):e1004293. doi: 10.1371/journal.ppat.1004293. eCollection 2014 Jul.


Host resistance selects for traits unrelated to resistance-breaking that affect fitness in a plant virus.

Fraile A, Hily JM, Pagán I, Pacios LF, García-Arenal F.

Mol Biol Evol. 2014 Apr;31(4):928-39. doi: 10.1093/molbev/msu045. Epub 2014 Jan 16.


Ecological and genetic determinants of Pepino Mosaic Virus emergence.

Moreno-Pérez MG, Pagán I, Aragón-Caballero L, Cáceres F, Fraile A, García-Arenal F.

J Virol. 2014 Mar;88(6):3359-68. doi: 10.1128/JVI.02980-13. Epub 2014 Jan 3.


Social support and its association with sociodemographic characteristics, dietary patterns, and perceived academic stress among college students in Puerto Rico.

Pagán I, Fabián C, Ríos JL, Betancourt J, Cruz SY, González AM, Rivera-Soto WT.

P R Health Sci J. 2013 Sep;32(3):146-53.


Reconstructing the timing and dispersion routes of HIV-1 subtype B epidemics in the Caribbean and Central America: a phylogenetic story.

Pagán I, Holguín A.

PLoS One. 2013 Jul 9;8(7):e69218. doi: 10.1371/journal.pone.0069218. Print 2013.


Caffeinated-beverage consumption and its association with socio-demographic characteristics and self-perceived academic stress in first and second year students at the University of Puerto Rico Medical Sciences Campus (UPR-MSC).

Ríos JL, Betancourt J, Pagán I, Fabián C, Cruz SY, González AM, González MJ, Rivera-Soto WT, Palacios C.

P R Health Sci J. 2013 Jun;32(2):95-100.


Non-medical use of prescription drugs and its association with socio-demographic characteristics, dietary pattern, and perceived academic load and stress in college students in Puerto Rico.

Betancourt J, Ríos JL, Pagán I, Fabián C, González AM, Cruz SY, González MJ, Rivera WT, Palacios C.

P R Health Sci J. 2013 Jun;32(2):89-94.


Alcohol consumption and smoking and their associations with socio-demographic characteristics, dietary patterns, and perceived academic stress in Puerto Rican college students.

González AM, Cruz SY, Ríos JL, Pagán I, Fabián C, Betancourt J, Rivera-Soto WT, González MJ, Palacios C.

P R Health Sci J. 2013 Jun;32(2):82-8.


The effect of gene overlapping on the rate of RNA virus evolution.

Simon-Loriere E, Holmes EC, Pagán I.

Mol Biol Evol. 2013 Aug;30(8):1916-28. doi: 10.1093/molbev/mst094. Epub 2013 May 17.


Physical activity and its associations with sociodemographic characteristics, dietary patterns, and perceived academic stress in students attending college in Puerto Rico.

Cruz SY, Fabián C, Pagán I, Ríos JL, González AM, Betancourt J, González MJ, Rivera-Soto WT, Palacios C.

P R Health Sci J. 2013 Mar;32(1):44-50.


Dietary patterns and their association with sociodemographic characteristics and perceived academic stress of college students in Puerto Rico.

Fabián C, Pagán I, Ríos JL, Betancourt J, Cruz SY, González AM, Palacios C, González MJ, Rivera-Soto WT.

P R Health Sci J. 2013 Mar;32(1):36-43.


Landscape heterogeneity shapes host-parasite interactions and results in apparent plant-virus codivergence.

Rodelo-Urrego M, Pagán I, González-Jara P, Betancourt M, Moreno-Letelier A, Ayllón MA, Fraile A, Piñero D, García-Arenal F.

Mol Ecol. 2013 Apr;22(8):2325-40. doi: 10.1111/mec.12232. Epub 2013 Feb 4.


Effect of biodiversity changes in disease risk: exploring disease emergence in a plant-virus system.

Pagán I, González-Jara P, Moreno-Letelier A, Rodelo-Urrego M, Fraile A, Piñero D, García-Arenal F.

PLoS Pathog. 2012;8(7):e1002796. doi: 10.1371/journal.ppat.1002796. Epub 2012 Jul 5.


Deep sequencing reveals persistence of intra- and inter-host genetic diversity in natural and greenhouse populations of zucchini yellow mosaic virus.

Simmons HE, Dunham JP, Stack JC, Dickins BJ, Pagán I, Holmes EC, Stephenson AG.

J Gen Virol. 2012 Aug;93(Pt 8):1831-40. doi: 10.1099/vir.0.042622-0. Epub 2012 May 16.


Level of gene expression is a major determinant of protein evolution in the viral order Mononegavirales.

Pagán I, Holmes EC, Simon-Loriere E.

J Virol. 2012 May;86(9):5253-63. doi: 10.1128/JVI.06050-11. Epub 2012 Feb 15.


The role of evolutionary intermediates in the host adaptation of canine parvovirus.

Stucker KM, Pagan I, Cifuente JO, Kaelber JT, Lillie TD, Hafenstein S, Holmes EC, Parrish CR.

J Virol. 2012 Feb;86(3):1514-21. doi: 10.1128/JVI.06222-11. Epub 2011 Nov 23.


Role of multiple hosts in the cross-species transmission and emergence of a pandemic parvovirus.

Allison AB, Harbison CE, Pagan I, Stucker KM, Kaelber JT, Brown JD, Ruder MG, Keel MK, Dubovi EJ, Holmes EC, Parrish CR.

J Virol. 2012 Jan;86(2):865-72. doi: 10.1128/JVI.06187-11. Epub 2011 Nov 9.


Rapid genetic diversification and high fitness penalties associated with pathogenicity evolution in a plant virus.

Fraile A, Pagán I, Anastasio G, Sáez E, García-Arenal F.

Mol Biol Evol. 2011 Apr;28(4):1425-37. doi: 10.1093/molbev/msq327. Epub 2010 Dec 3.


Phylogenetic analysis reveals rapid evolutionary dynamics in the plant RNA virus genus tobamovirus.

Pagán I, Firth C, Holmes EC.

J Mol Evol. 2010 Oct;71(4):298-307. doi: 10.1007/s00239-010-9385-4. Epub 2010 Sep 14.


Arabidopsis thaliana as a model for the study of plant-virus co-evolution.

Pagán I, Fraile A, Fernandez-Fueyo E, Montes N, Alonso-Blanco C, García-Arenal F.

Philos Trans R Soc Lond B Biol Sci. 2010 Jun 27;365(1548):1983-95. doi: 10.1098/rstb.2010.0062.


Long-term evolution of the Luteoviridae: time scale and mode of virus speciation.

Pagán I, Holmes EC.

J Virol. 2010 Jun;84(12):6177-87. doi: 10.1128/JVI.02160-09. Epub 2010 Apr 7.


Genomic and biological characterization of chiltepín yellow mosaic virus, a new tymovirus infecting Capsicum annuum var. aviculare in Mexico.

Pagán I, Betancourt M, de Miguel J, Piñero D, Fraile A, García-Arenal F.

Arch Virol. 2010 May;155(5):675-84. doi: 10.1007/s00705-010-0639-7. Epub 2010 Mar 14.


Differential tolerance to direct and indirect density-dependent costs of viral infection in Arabidopsis thaliana.

Pagán I, Alonso-Blanco C, García-Arenal F.

PLoS Pathog. 2009 Jul;5(7):e1000531. doi: 10.1371/journal.ppat.1000531. Epub 2009 Jul 31.


The ERECTA Receptor-Like Kinase Regulates Cell Wall-Mediated Resistance to Pathogens in Arabidopsis thaliana.

Sánchez-Rodríguez C, Estévez JM, Llorente F, Hernández-Blanco C, Jordá L, Pagán I, Berrocal M, Marco Y, Somerville S, Molina A.

Mol Plant Microbe Interact. 2009 Aug;22(8):953-63. doi: 10.1094/MPMI-22-8-0953.


Genetic Structure of the Population of Pepino mosaic virus Infecting Tomato Crops in Spain.

Pagán I, Del Carmen Córdoba-Sellés M, Martínez-Priego L, Fraile A, Malpica JM, Jordá C, García-Arenal F.

Phytopathology. 2006 Mar;96(3):274-9. doi: 10.1094/PHYTO-96-0274.


Host responses in life-history traits and tolerance to virus infection in Arabidopsis thaliana.

Pagán I, Alonso-Blanco C, García-Arenal F.

PLoS Pathog. 2008 Aug 15;4(8):e1000124. doi: 10.1371/journal.ppat.1000124.


Structural and genetic requirements for the biogenesis of tobacco rattle virus-derived small interfering RNAs.

Donaire L, Barajas D, Martínez-García B, Martínez-Priego L, Pagán I, Llave C.

J Virol. 2008 Jun;82(11):5167-77. doi: 10.1128/JVI.00272-08. Epub 2008 Mar 19.


The relationship of within-host multiplication and virulence in a plant-virus system.

Pagán I, Alonso-Blanco C, García-Arenal F.

PLoS One. 2007 Aug 29;2(8):e786.


Chloroprene: overview of studies under consideration for the development of an IRIS assessment.

Pagan I.

Chem Biol Interact. 2007 Mar 20;166(1-3):341-51. Epub 2006 Dec 12.


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