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Items: 1 to 50 of 83

1.

Proteogenomic approach to UTR peptides identification.

Choi S, Ju S, Lee J, Na S, Lee C, Paek E.

J Proteome Res. 2019 Nov 12. doi: 10.1021/acs.jproteome.9b00498. [Epub ahead of print]

PMID:
31714086
2.

Synergy of Epoxy Chemical Tethers and Defect-Free Graphene in Enabling Stable Lithium Cycling of Silicon Nanoparticles.

Liu W, Li H, Jin J, Wang Y, Zhang Z, Chen Z, Wang Q, Chen Y, Paek E, Mitlin D.

Angew Chem Int Ed Engl. 2019 Nov 11;58(46):16590-16600. doi: 10.1002/anie.201906612. Epub 2019 Sep 26. Review.

PMID:
31535753
3.

Common Repository of FBS Proteins (cRFP) To Be Added to a Search Database for Mass Spectrometric Analysis of Cell Secretome.

Shin J, Kwon Y, Lee S, Na S, Hong EY, Ju S, Jung HG, Kaushal P, Shin S, Back JH, Choi SY, Kim EH, Lee SJ, Park YE, Ahn HS, Ahn Y, Kabir MH, Park SJ, Yang WS, Yeom J, Bang OY, Ha CW, Lee JW, Kang UB, Kim HJ, Park KS, Lee JE, Lee JE, Kim JY, Kim KP, Kim Y, Hirano H, Yi EC, Cho JY, Paek E, Lee C.

J Proteome Res. 2019 Oct 4;18(10):3800-3806. doi: 10.1021/acs.jproteome.9b00475. Epub 2019 Sep 10.

PMID:
31475827
4.

Direct Structure-Performance Comparison of All-Carbon Potassium and Sodium Ion Capacitors.

Xu Z, Wu M, Chen Z, Chen C, Yang J, Feng T, Paek E, Mitlin D.

Adv Sci (Weinh). 2019 Apr 24;6(12):1802272. doi: 10.1002/advs.201802272. eCollection 2019 Jun 19.

5.

MODplus: Robust and Unrestrictive Identification of Post-Translational Modifications Using Mass Spectrometry.

Na S, Kim J, Paek E.

Anal Chem. 2019 Sep 3;91(17):11324-11333. doi: 10.1021/acs.analchem.9b02445. Epub 2019 Aug 14.

PMID:
31365238
6.

Sulfur-Grafted Hollow Carbon Spheres for Potassium-Ion Battery Anodes.

Ding J, Zhang H, Zhou H, Feng J, Zheng X, Zhong C, Paek E, Hu W, Mitlin D.

Adv Mater. 2019 Jul;31(30):e1900429. doi: 10.1002/adma.201900429. Epub 2019 Jun 3.

PMID:
31157475
7.

Sodium Metal Anodes: Emerging Solutions to Dendrite Growth.

Lee B, Paek E, Mitlin D, Lee SW.

Chem Rev. 2019 Apr 24;119(8):5416-5460. doi: 10.1021/acs.chemrev.8b00642. Epub 2019 Apr 4.

PMID:
30946573
8.

deMix: Decoding Deuterated Distributions from Heterogeneous Protein States via HDX-MS.

Na S, Lee JJ, Joo JWJ, Lee KJ, Paek E.

Sci Rep. 2019 Feb 28;9(1):3176. doi: 10.1038/s41598-019-39512-8.

9.

Test-retest reliability in an fMRI study of naming in dementia.

Paek EJ, Murray LL, Newman SD, Kim DJ.

Brain Lang. 2019 Apr;191:31-45. doi: 10.1016/j.bandl.2019.02.002. Epub 2019 Feb 23.

PMID:
30807893
10.

Medication Event Monitoring System for Infectious Tuberculosis Treatment in Morocco: A Retrospective Cohort Study.

Park S, Sentissi I, Gil SJ, Park WS, Oh B, Son AR, Kong YJ, Park S, Paek E, Park YJ, Lee SH.

Int J Environ Res Public Health. 2019 Jan 31;16(3). pii: E412. doi: 10.3390/ijerph16030412.

11.

Proteogenomic Characterization of Human Early-Onset Gastric Cancer.

Mun DG, Bhin J, Kim S, Kim H, Jung JH, Jung Y, Jang YE, Park JM, Kim H, Jung Y, Lee H, Bae J, Back S, Kim SJ, Kim J, Park H, Li H, Hwang KB, Park YS, Yook JH, Kim BS, Kwon SY, Ryu SW, Park DY, Jeon TY, Kim DH, Lee JH, Han SU, Song KS, Park D, Park JW, Rodriguez H, Kim J, Lee H, Kim KP, Yang EG, Kim HK, Paek E, Lee S, Lee SW, Hwang D.

Cancer Cell. 2019 Jan 14;35(1):111-124.e10. doi: 10.1016/j.ccell.2018.12.003.

PMID:
30645970
12.

Directional Flow-Aided Sonochemistry Yields Graphene with Tunable Defects to Provide Fundamental Insight on Sodium Metal Plating Behavior.

Liu W, Li P, Wang W, Zhu D, Chen Y, Pen S, Paek E, Mitlin D.

ACS Nano. 2018 Dec 26;12(12):12255-12268. doi: 10.1021/acsnano.8b06051. Epub 2018 Nov 19.

PMID:
30422625
13.

Li-Rich Li[Li1/6 Fe1/6 Ni1/6 Mn1/2 ]O2 (LFNMO) Cathodes: Atomic Scale Insight on the Mechanisms of Cycling Decay and of the Improvement due to Cobalt Phosphate Surface Modification.

Li X, Zhang K, Mitlin D, Paek E, Wang M, Jiang F, Huang Y, Yang Z, Gong Y, Gu L, Zhao W, Du Y, Zheng J.

Small. 2018 Oct;14(40):e1802570. doi: 10.1002/smll.201802570. Epub 2018 Sep 9.

PMID:
30260569
14.

Data-Dependent Scoring Parameter Optimization in MS-GF+ Using Spectrum Quality Filter.

Jo H, Paek E.

J Proteome Res. 2018 Oct 5;17(10):3593-3598. doi: 10.1021/acs.jproteome.8b00415. Epub 2018 Jul 26.

PMID:
30033731
15.

Review of Hybrid Ion Capacitors: From Aqueous to Lithium to Sodium.

Ding J, Hu W, Paek E, Mitlin D.

Chem Rev. 2018 Jul 25;118(14):6457-6498. doi: 10.1021/acs.chemrev.8b00116. Epub 2018 Jun 28.

PMID:
29953230
16.

Understanding CO2 capture mechanisms in aqueous hydrazine via combined NMR and first-principles studies.

Lee B, Stowe HM, Lee KH, Hur NH, Hwang SJ, Paek E, Hwang GS.

Phys Chem Chem Phys. 2017 Sep 13;19(35):24067-24075. doi: 10.1039/c7cp03803h.

PMID:
28835966
17.

Comprehensive analysis of human protein N-termini enables assessment of various protein forms.

Yeom J, Ju S, Choi Y, Paek E, Lee C.

Sci Rep. 2017 Jul 26;7(1):6599. doi: 10.1038/s41598-017-06314-9.

18.

Systematic Comparison of False-Discovery-Rate-Controlling Strategies for Proteogenomic Search Using Spike-in Experiments.

Li H, Park J, Kim H, Hwang KB, Paek E.

J Proteome Res. 2017 Jun 2;16(6):2231-2239. doi: 10.1021/acs.jproteome.7b00033. Epub 2017 May 5.

PMID:
28452485
19.

Evaluating the effect of database inflation in proteogenomic search on sensitive and reliable peptide identification.

Li H, Joh YS, Kim H, Paek E, Lee SW, Hwang KB.

BMC Genomics. 2016 Dec 22;17(Suppl 13):1031. doi: 10.1186/s12864-016-3327-5.

20.

ACTG: novel peptide mapping onto gene models.

Choi S, Kim H, Paek E.

Bioinformatics. 2017 Apr 15;33(8):1218-1220. doi: 10.1093/bioinformatics/btw787.

PMID:
28031186
21.

The Bright Future for Electrode Materials of Energy Devices: Highly Conductive Porous Na-Embedded Carbon.

Wei W, Chang L, Sun K, Pak AJ, Paek E, Hwang GS, Hu YH.

Nano Lett. 2016 Dec 14;16(12):8029-8033. Epub 2016 Nov 29.

PMID:
27960513
22.

First-principles assessment of CO2 capture mechanisms in aqueous piperazine solution.

Stowe HM, Paek E, Hwang GS.

Phys Chem Chem Phys. 2016 Sep 14;18(36):25296-25307.

PMID:
27711409
23.

On the origin of preferred bicarbonate production from carbon dioxide (CO₂) capture in aqueous 2-amino-2-methyl-1-propanol (AMP).

Stowe HM, Vilčiauskas L, Paek E, Hwang GS.

Phys Chem Chem Phys. 2015 Nov 21;17(43):29184-92. doi: 10.1039/c5cp04876a.

PMID:
26466331
24.

HiXCorr: a portable high-speed XCorr engine for high-resolution tandem mass spectrometry.

Kim H, Jo H, Park H, Paek E.

Bioinformatics. 2015 Dec 15;31(24):4026-8. doi: 10.1093/bioinformatics/btv490. Epub 2015 Aug 26.

PMID:
26315908
25.

Anomalous Stagewise Lithiation of Gold-Coated Silicon Nanowires: A Combined In Situ Characterization and First-Principles Study.

Chou CY, Seo JH, Tsai YH, Ahn JP, Paek E, Cho MH, Choi IS, Hwang GS.

ACS Appl Mater Interfaces. 2015 Aug 12;7(31):16976-83. doi: 10.1021/acsami.5b01930. Epub 2015 Jul 29.

PMID:
26194088
26.
27.

NextSearch: A Search Engine for Mass Spectrometry Data against a Compact Nucleotide Exon Graph.

Kim H, Park H, Paek E.

J Proteome Res. 2015 Jul 2;14(7):2784-91. doi: 10.1021/acs.jproteome.5b00047. Epub 2015 Jun 9.

PMID:
26004133
28.

Characterization of disulfide bonds by planned digestion and tandem mass spectrometry.

Na S, Paek E, Choi JS, Kim D, Lee SJ, Kwon J.

Mol Biosyst. 2015 Apr;11(4):1156-64. doi: 10.1039/c4mb00688g.

29.
30.

Reaction mechanisms of aqueous monoethanolamine with carbon dioxide: a combined quantum chemical and molecular dynamics study.

Hwang GS, Stowe HM, Paek E, Manogaran D.

Phys Chem Chem Phys. 2015 Jan 14;17(2):831-9. doi: 10.1039/c4cp04518a. Epub 2014 Nov 10.

PMID:
25382097
31.

Compact variant-rich customized sequence database and a fast and sensitive database search for efficient proteogenomic analyses.

Park H, Bae J, Kim H, Kim S, Kim H, Mun DG, Joh Y, Lee W, Chae S, Lee S, Kim HK, Hwang D, Lee SW, Paek E.

Proteomics. 2014 Dec;14(23-24):2742-9. doi: 10.1002/pmic.201400225. Epub 2014 Nov 19.

PMID:
25316439
32.

Large capacitance enhancement induced by metal-doping in graphene-based supercapacitors: a first-principles-based assessment.

Paek E, Pak AJ, Hwang GS.

ACS Appl Mater Interfaces. 2014 Aug 13;6(15):12168-76. doi: 10.1021/am501395j. Epub 2014 Jul 18.

PMID:
24983127
33.

Estimating influence of cofragmentation on peptide quantification and identification in iTRAQ experiments by simulating multiplexed spectra.

Li H, Hwang KB, Mun DG, Kim H, Lee H, Lee SW, Paek E.

J Proteome Res. 2014 Jul 3;13(7):3488-97. doi: 10.1021/pr500060d. Epub 2014 Jun 23.

PMID:
24918111
34.

Software eyes for protein post-translational modifications.

Na S, Paek E.

Mass Spectrom Rev. 2015 Mar-Apr;34(2):133-47. doi: 10.1002/mas.21425. Epub 2014 Jun 2. Review.

PMID:
24889695
35.

Antipsychotic medication use in nursing homes: a proposed measure of quality.

Lucas JA, Chakravarty S, Bowblis JR, Gerhard T, Kalay E, Paek EK, Crystal S.

Int J Geriatr Psychiatry. 2014 Oct;29(10):1049-61. doi: 10.1002/gps.4098. Epub 2014 Mar 20.

PMID:
24648059
36.

Reinvestigation of aminoacyl-tRNA synthetase core complex by affinity purification-mass spectrometry reveals TARSL2 as a potential member of the complex.

Kim K, Park SJ, Na S, Kim JS, Choi H, Kim YK, Paek E, Lee C.

PLoS One. 2013 Dec 2;8(12):e81734. doi: 10.1371/journal.pone.0081734. eCollection 2013.

37.

Relative contributions of quantum and double layer capacitance to the supercapacitor performance of carbon nanotubes in an ionic liquid.

Pak AJ, Paek E, Hwang GS.

Phys Chem Chem Phys. 2013 Dec 7;15(45):19741-7. doi: 10.1039/c3cp52590b. Epub 2013 Oct 21. Erratum in: Phys Chem Chem Phys. 2014 Oct 7;16(37):20248-9.

PMID:
24141286
38.

Monoisotopic mass determination algorithm for selenocysteine-containing polypeptides from mass spectrometric data based on theoretical modeling of isotopic peak intensity ratios.

Kim JW, Lee S, Park K, Na S, Paek E, Park HS, Park H, Lee KJ, Jeong J, Kim HY.

J Proteome Res. 2012 Sep 7;11(9):4488-98. doi: 10.1021/pr300232y. Epub 2012 Aug 13.

PMID:
22779694
39.

Fast multi-blind modification search through tandem mass spectrometry.

Na S, Bandeira N, Paek E.

Mol Cell Proteomics. 2012 Apr;11(4):M111.010199. doi: 10.1074/mcp.M111.010199. Epub 2011 Dec 20.

40.

Isoform-specific regulation of Akt by PDGF-induced reactive oxygen species.

Wani R, Qian J, Yin L, Bechtold E, King SB, Poole LB, Paek E, Tsang AW, Furdui CM.

Proc Natl Acad Sci U S A. 2011 Jun 28;108(26):10550-5. doi: 10.1073/pnas.1011665108. Epub 2011 Jun 13.

41.

High-throughput peptide quantification using mTRAQ reagent triplex.

Yoon JY, Yeom J, Lee H, Kim K, Na S, Park K, Paek E, Lee C.

BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S46. doi: 10.1186/1471-2105-12-S1-S46.

42.

Novel oxidative modifications in redox-active cysteine residues.

Jeong J, Jung Y, Na S, Jeong J, Lee E, Kim MS, Choi S, Shin DH, Paek E, Lee HY, Lee KJ.

Mol Cell Proteomics. 2011 Mar;10(3):M110.000513. doi: 10.1074/mcp.M110.000513. Epub 2010 Dec 10.

43.

Batch fabrication of high-performance planar patch-clamp devices in quartz.

Nagarah JM, Paek E, Luo Y, Wang P, Hwang GS, Heath JR.

Adv Mater. 2010 Nov 2;22(41):4622-7. doi: 10.1002/adma.201001793. No abstract available.

PMID:
20830714
44.

[Comparison for risk estimate of aspiration between the revised dysphagia assessment tool and videofluoroscopy in post-stroke patients].

Moon KH, Sohn HS, Lee ES, Paek EK, Kang EJ, Lee SH, Han NR, Lee MH, Kim DY, Park CG, Yoo JS.

J Korean Acad Nurs. 2010 Jun;40(3):359-66. doi: 10.4040/jkan.2010.40.3.359. Korean.

PMID:
20634627
45.

The protein-disulfide isomerase DsbC cooperates with SurA and DsbA in the assembly of the essential β-barrel protein LptD.

Denoncin K, Vertommen D, Paek E, Collet JF.

J Biol Chem. 2010 Sep 17;285(38):29425-33. doi: 10.1074/jbc.M110.119321. Epub 2010 Jul 7.

46.

Improved quantitative analysis of mass spectrometry using quadratic equations.

Yoon JY, Lim KY, Lee S, Park K, Paek E, Kang UB, Yeom J, Lee C.

J Proteome Res. 2010 May 7;9(5):2775-85. doi: 10.1021/pr100183t.

PMID:
20329765
47.

Target-Decoy with Mass Binning: a simple and effective validation method for shotgun proteomics using high resolution mass spectrometry.

Joo JW, Na S, Baek JH, Lee C, Paek E.

J Proteome Res. 2010 Feb 5;9(2):1150-6. doi: 10.1021/pr9006377.

PMID:
19908919
48.

New algorithm for the identification of intact disulfide linkages based on fragmentation characteristics in tandem mass spectra.

Choi S, Jeong J, Na S, Lee HS, Kim HY, Lee KJ, Paek E.

J Proteome Res. 2010 Jan;9(1):626-35. doi: 10.1021/pr900771r.

PMID:
19902913
49.

Public awareness and knowledge of herpes zoster: results of a global survey.

Paek E, Johnson R.

Gerontology. 2010;56(1):20-31. doi: 10.1159/000240046. Epub 2009 Sep 17.

PMID:
19776543
50.

Prediction of novel modifications by unrestrictive search of tandem mass spectra.

Na S, Paek E.

J Proteome Res. 2009 Oct;8(10):4418-27. doi: 10.1021/pr9001146.

PMID:
19658439

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