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Lipopolysaccharide and Morphine-3-Glucuronide-Induced Immune Signalling Increases the Expression of Polysialic Acid in PC12 Cells.

Iqbal S, Parker LM, Everest-Dass AV, Moh ESX, Sayyadi N, Hutchinson MR, Packer NH.

Mol Neurobiol. 2019 Oct 24. doi: 10.1007/s12035-019-01791-7. [Epub ahead of print]


GlyGen: Computational and Informatics Resources for Glycoscience.

York WS, Mazumder R, Ranzinger R, Edwards N, Kahsay R, Aoki-Kinoshita KF, Campbell MP, Cummings RD, Feizi T, Martin M, Natale DA, Packer NH, Woods RJ, Agarwal G, Arpinar S, Bhat S, Blake J, Castro LJG, Fochtman B, Gildersleeve J, Goldman R, Holmes X, Jain V, Kulkarni S, Mahadik R, Mehta A, Mousavi R, Nakarakommula S, Navelkar R, Pattabiraman N, Pierce MJ, Ross K, Vasudev P, Vora J, Williamson T, Zhang W.

Glycobiology. 2019 Oct 16. pii: cwz080. doi: 10.1093/glycob/cwz080. [Epub ahead of print] No abstract available.


The GlySpace Alliance: towards a collaborative global glycoinformatics community.

Aoki-Kinoshita KF, Lisacek F, Mazumder R, York WS, Packer NH.

Glycobiology. 2019 Oct 1. pii: cwz078. doi: 10.1093/glycob/cwz078. [Epub ahead of print] No abstract available.


Specific Sialoforms Required for the Immune Suppressive Activity of Human Soluble CD52.

Shathili AM, Bandala-Sanchez E, John A, Goddard-Borger ED, Thaysen-Andersen M, Everest-Dass AV, Adams TE, Harrison LC, Packer NH.

Front Immunol. 2019 Aug 27;10:1967. doi: 10.3389/fimmu.2019.01967. eCollection 2019.


3D sub-diffraction imaging in a conventional confocal configuration by exploiting super-linear emitters.

Denkova D, Ploschner M, Das M, Parker LM, Zheng X, Lu Y, Orth A, Packer NH, Piper JA.

Nat Commun. 2019 Aug 16;10(1):3695. doi: 10.1038/s41467-019-11603-0.


Protein Paucimannosylation Is an Enriched N-Glycosylation Signature of Human Cancers.

Chatterjee S, Lee LY, Kawahara R, Abrahams JL, Adamczyk B, Anugraham M, Ashwood C, Sumer-Bayraktar Z, Briggs MT, Chik JHL, Everest-Dass A, Förster S, Hinneburg H, Leite KRM, Loke I, Möginger U, Moh ESX, Nakano M, Recuero S, Sethi MK, Srougi M, Stavenhagen K, Venkatakrishnan V, Wongtrakul-Kish K, Diestel S, Hoffmann P, Karlsson NG, Kolarich D, Molloy MP, Muders MH, Oehler MK, Packer NH, Palmisano G, Thaysen-Andersen M.

Proteomics. 2019 Nov;19(21-22):e1900010. doi: 10.1002/pmic.201900010. Epub 2019 Oct 16.


Chemoenzymatic glycan labelling as a platform for site-specific IgM-antibody drug conjugates.

Moh ESX, Sayyadi N, Packer NH.

Anal Biochem. 2019 Nov 1;584:113385. doi: 10.1016/j.ab.2019.113385. Epub 2019 Aug 2.


MALDI Mass Spectrometry Imaging of Early- and Late-Stage Serous Ovarian Cancer Tissue Reveals Stage-Specific N-Glycans.

Briggs MT, Condina MR, Ho YY, Everest-Dass AV, Mittal P, Kaur G, Oehler MK, Packer NH, Hoffmann P.

Proteomics. 2019 Nov;19(21-22):e1800482. doi: 10.1002/pmic.201800482. Epub 2019 Aug 16.


Towards a standardized bioinformatics infrastructure for N- and O-glycomics.

Rojas-Macias MA, Mariethoz J, Andersson P, Jin C, Venkatakrishnan V, Aoki NP, Shinmachi D, Ashwood C, Madunic K, Zhang T, Miller RL, Horlacher O, Struwe WB, Watanabe Y, Okuda S, Levander F, Kolarich D, Rudd PM, Wuhrer M, Kettner C, Packer NH, Aoki-Kinoshita KF, Lisacek F, Karlsson NG.

Nat Commun. 2019 Jul 22;10(1):3275. doi: 10.1038/s41467-019-11131-x. Review.


Human glycan expression patterns influence Group A streptococcal colonization of epithelial cells.

De Oliveira DMP, Everest-Dass A, Hartley-Tassell L, Day CJ, Indraratna A, Brouwer S, Cleary A, Kautto L, Gorman J, Packer NH, Jennings MP, Walker MJ, Sanderson-Smith ML.

FASEB J. 2019 Oct;33(10):10808-10818. doi: 10.1096/fj.201900559R. Epub 2019 Jun 29.


Comparing the chemical composition of dietary fibres prepared from sugarcane, psyllium husk and wheat dextrin.

Chong RWW, Ball M, McRae C, Packer NH.

Food Chem. 2019 Nov 15;298:125032. doi: 10.1016/j.foodchem.2019.125032. Epub 2019 Jun 17.


Updates to the Symbol Nomenclature for Glycans guidelines.

Neelamegham S, Aoki-Kinoshita K, Bolton E, Frank M, Lisacek F, Lütteke T, O'Boyle N, Packer NH, Stanley P, Toukach P, Varki A, Woods RJ; SNFG Discussion Group.

Glycobiology. 2019 Aug 20;29(9):620-624. doi: 10.1093/glycob/cwz045.


Time-Gated Luminescent In Situ Hybridization (LISH): Highly Sensitive Detection of Pathogenic Staphylococcus aureus.

Sayyadi N, Connally RE, Lawson TS, Yuan J, Packer NH, Piper JA.

Molecules. 2019 May 31;24(11). pii: E2083. doi: 10.3390/molecules24112083.


Standardization of PGC-LC-MS-based glycomics for sample specific glycotyping.

Ashwood C, Pratt B, MacLean BX, Gundry RL, Packer NH.

Analyst. 2019 Jun 7;144(11):3601-3612. doi: 10.1039/c9an00486f. Epub 2019 May 8.


Visualizing neuroinflammation with fluorescence and luminescent lanthanide-based in situ hybridization.

Parker LM, Sayyadi N, Staikopoulos V, Shrestha A, Hutchinson MR, Packer NH.

J Neuroinflammation. 2019 Mar 21;16(1):65. doi: 10.1186/s12974-019-1451-2.


Post-Column Make-Up Flow (PCMF) Enhances the Performance of Capillary-Flow PGC-LC-MS/MS-Based Glycomics.

Hinneburg H, Chatterjee S, Schirmeister F, Nguyen-Khuong T, Packer NH, Rapp E, Thaysen-Andersen M.

Anal Chem. 2019 Apr 2;91(7):4559-4567. doi: 10.1021/acs.analchem.8b05720. Epub 2019 Mar 14.


Differential involvement of glycans in the binding of Staphylococcus epidermidis and Corynebacterium spp. to human sweat.

Lin CH, Peterson RA, Gueniche A, de Beaumais SA, Hourblin V, Breton L, Dalko M, Packer NH.

Microbiol Res. 2019 Mar;220:53-60. doi: 10.1016/j.micres.2018.12.007. Epub 2018 Dec 30.


GlyConnect: Glycoproteomics Goes Visual, Interactive, and Analytical.

Alocci D, Mariethoz J, Gastaldello A, Gasteiger E, Karlsson NG, Kolarich D, Packer NH, Lisacek F.

J Proteome Res. 2019 Feb 1;18(2):664-677. doi: 10.1021/acs.jproteome.8b00766. Epub 2019 Jan 15.


Understanding cellular glycan surfaces in the central nervous system.

Iqbal S, Ghanimi Fard M, Everest-Dass A, Packer NH, Parker LM.

Biochem Soc Trans. 2019 Feb 28;47(1):89-100. doi: 10.1042/BST20180330. Epub 2018 Dec 17. Review.


Translating N-Glycan Analytical Applications into Clinical Strategies for Ovarian Cancer.

Briggs MT, Condina MR, Klingler-Hoffmann M, Arentz G, Everest-Dass AV, Kaur G, Oehler MK, Packer NH, Hoffmann P.

Proteomics Clin Appl. 2019 May;13(3):e1800099. doi: 10.1002/prca.201800099. Epub 2018 Nov 9. Review.


Raw N-glycan mass spectrometry imaging data on formalin-fixed mouse kidney.

Gustafsson OJR, Briggs MT, Condina MR, Winderbaum LJ, Pelzing M, McColl SR, Everest-Dass AV, Packer NH, Hoffmann P.

Data Brief. 2018 Sep 12;21:185-188. doi: 10.1016/j.dib.2018.08.186. eCollection 2018 Dec.


The effect of streptozotocin-induced hyperglycemia on N-and O-linked protein glycosylation in mouse ovary.

Shathili AM, Brown HM, Everest-Dass AV, Tan TCY, Parker LM, Thompson JG, Packer NH.

Glycobiology. 2018 Nov 1;28(11):832-840. doi: 10.1093/glycob/cwy075.


Glycomics@ExPASy: Bridging the Gap.

Mariethoz J, Alocci D, Gastaldello A, Horlacher O, Gasteiger E, Rojas-Macias M, Karlsson NG, Packer NH, Lisacek F.

Mol Cell Proteomics. 2018 Nov;17(11):2164-2176. doi: 10.1074/mcp.RA118.000799. Epub 2018 Aug 10.


Fiber Supplements Derived From Sugarcane Stem, Wheat Dextrin and Psyllium Husk Have Different In Vitro Effects on the Human Gut Microbiota.

Gamage HKAH, Tetu SG, Chong RWW, Bucio-Noble D, Rosewarne CP, Kautto L, Ball MS, Molloy MP, Packer NH, Paulsen IT.

Front Microbiol. 2018 Jul 20;9:1618. doi: 10.3389/fmicb.2018.01618. eCollection 2018.


GlycoStore: a database of retention properties for glycan analysis.

Zhao S, Walsh I, Abrahams JL, Royle L, Nguyen-Khuong T, Spencer D, Fernandes DL, Packer NH, Rudd PM, Campbell MP.

Bioinformatics. 2018 Sep 15;34(18):3231-3232. doi: 10.1093/bioinformatics/bty319.


Discrimination of Isomers of Released N- and O-Glycans Using Diagnostic Product Ions in Negative Ion PGC-LC-ESI-MS/MS.

Ashwood C, Lin CH, Thaysen-Andersen M, Packer NH.

J Am Soc Mass Spectrom. 2018 Jun;29(6):1194-1209. doi: 10.1007/s13361-018-1932-z. Epub 2018 Mar 30.


Transition of Mesenchymal and Epithelial Cancer Cells Depends on α1-4 Galactosyltransferase-Mediated Glycosphingolipids.

Jacob F, Alam S, Konantz M, Liang CY, Kohler RS, Everest-Dass AV, Huang YL, Rimmer N, Fedier A, Schötzau A, Lopez MN, Packer NH, Lengerke C, Heinzelmann-Schwarz V.

Cancer Res. 2018 Jun 1;78(11):2952-2965. doi: 10.1158/0008-5472.CAN-17-2223. Epub 2018 Mar 23.


Reduced background autofluorescence for cell imaging using nanodiamonds and lanthanide chelates.

Cordina NM, Sayyadi N, Parker LM, Everest-Dass A, Brown LJ, Packer NH.

Sci Rep. 2018 Mar 14;8(1):4521. doi: 10.1038/s41598-018-22702-1.


Human disease glycomics: technology advances enabling protein glycosylation analysis - part 2.

Everest-Dass AV, Moh ESX, Ashwood C, Shathili AMM, Packer NH.

Expert Rev Proteomics. 2018 Apr;15(4):341-352. doi: 10.1080/14789450.2018.1448710. Epub 2018 Mar 20. Review.


Periconception onset diabetes is associated with embryopathy and fetal growth retardation, reproductive tract hyperglycosylation and impaired immune adaptation to pregnancy.

Brown HM, Green ES, Tan TCY, Gonzalez MB, Rumbold AR, Hull ML, Norman RJ, Packer NH, Robertson SA, Thompson JG.

Sci Rep. 2018 Feb 1;8(1):2114. doi: 10.1038/s41598-018-19263-8.


Biosimilarity and Interchangeability: Principles and Evidence: A Systematic Review.

McKinnon RA, Cook M, Liauw W, Marabani M, Marschner IC, Packer NH, Prins JB.

BioDrugs. 2018 Feb;32(1):27-52. doi: 10.1007/s40259-017-0256-z. Review.


Human disease glycomics: technology advances enabling protein glycosylation analysis - part 1.

Everest-Dass AV, Moh ESX, Ashwood C, Shathili AMM, Packer NH.

Expert Rev Proteomics. 2018 Feb;15(2):165-182. doi: 10.1080/14789450.2018.1421946. Epub 2018 Jan 11. Review.


Cereal products derived from wheat, sorghum, rice and oats alter the infant gut microbiota in vitro.

Gamage HKAH, Tetu SG, Chong RWW, Ashton J, Packer NH, Paulsen IT.

Sci Rep. 2017 Oct 30;7(1):14312. doi: 10.1038/s41598-017-14707-z.


Development of a data independent acquisition mass spectrometry workflow to enable glycopeptide analysis without predefined glycan compositional knowledge.

Lin CH, Krisp C, Packer NH, Molloy MP.

J Proteomics. 2018 Feb 10;172:68-75. doi: 10.1016/j.jprot.2017.10.011. Epub 2017 Oct 22.


GlyTouCan: an accessible glycan structure repository.

Tiemeyer M, Aoki K, Paulson J, Cummings RD, York WS, Karlsson NG, Lisacek F, Packer NH, Campbell MP, Aoki NP, Fujita A, Matsubara M, Shinmachi D, Tsuchiya S, Yamada I, Pierce M, Ranzinger R, Narimatsu H, Aoki-Kinoshita KF.

Glycobiology. 2017 Oct 1;27(10):915-919. doi: 10.1093/glycob/cwx066.


Building a PGC-LC-MS N-glycan retention library and elution mapping resource.

Abrahams JL, Campbell MP, Packer NH.

Glycoconj J. 2018 Feb;35(1):15-29. doi: 10.1007/s10719-017-9793-4. Epub 2017 Sep 13.



Campbell MP, Aoki-Kinoshita KF, Lisacek F, York WS, Packer NH.

In: Varki A, Cummings RD, Esko JD, Stanley P, Hart GW, Aebi M, Darvill AG, Kinoshita T, Packer NH, Prestegard JH, Schnaar RL, Seeberger PH, editors. Essentials of Glycobiology [Internet]. 3rd edition. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press; 2015-2017. Chapter 52.


Glycomics and Glycoproteomics.

Rudd P, Karlsson NG, Khoo KH, Packer NH.

In: Varki A, Cummings RD, Esko JD, Stanley P, Hart GW, Aebi M, Darvill AG, Kinoshita T, Packer NH, Prestegard JH, Schnaar RL, Seeberger PH, editors. Essentials of Glycobiology [Internet]. 3rd edition. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press; 2015-2017. Chapter 51.


Tissue glycomics distinguish tumour sites in women with advanced serous adenocarcinoma.

Anugraham M, Jacob F, Everest-Dass AV, Schoetzau A, Nixdorf S, Hacker NF, Fink D, Heinzelmann-Schwarz V, Packer NH.

Mol Oncol. 2017 Nov;11(11):1595-1615. doi: 10.1002/1878-0261.12134. Epub 2017 Sep 29.


Paucimannose-Rich N-glycosylation of Spatiotemporally Regulated Human Neutrophil Elastase Modulates Its Immune Functions.

Loke I, Østergaard O, Heegaard NHH, Packer NH, Thaysen-Andersen M.

Mol Cell Proteomics. 2017 Aug;16(8):1507-1527. doi: 10.1074/mcp.M116.066746. Epub 2017 Jun 19.


Polysialic Acid Regulates Sympathetic Outflow by Facilitating Information Transfer within the Nucleus of the Solitary Tract.

Bokiniec P, Shahbazian S, McDougall SJ, Berning BA, Cheng D, Llewellyn-Smith IJ, Burke PGR, McMullan S, Mühlenhoff M, Hildebrandt H, Braet F, Connor M, Packer NH, Goodchild AK.

J Neurosci. 2017 Jul 5;37(27):6558-6574. doi: 10.1523/JNEUROSCI.0200-17.2017. Epub 2017 Jun 2.


Enhancing structural characterisation of glucuronidated O-linked glycans using negative mode ion trap higher energy collision-induced dissociation mass spectrometry.

Ashwood C, Abrahams JL, Nevalainen H, Packer NH.

Rapid Commun Mass Spectrom. 2017 May 30;31(10):851-858. doi: 10.1002/rcm.7851.


N-Glycan matrix-assisted laser desorption/ionization mass spectrometry imaging protocol for formalin-fixed paraffin-embedded tissues.

Briggs MT, Ho YY, Kaur G, Oehler MK, Everest-Dass AV, Packer NH, Hoffmann P.

Rapid Commun Mass Spectrom. 2017 May 30;31(10):825-841. doi: 10.1002/rcm.7845.


Navigating the Glycome Space and Connecting the Glycoproteome.

Campbell MP, Peterson RA, Gasteiger E, Mariethoz J, Lisacek F, Packer NH.

Methods Mol Biol. 2017;1558:139-158. doi: 10.1007/978-1-4939-6783-4_7.


Blood Group Antigen Recognition via the Group A Streptococcal M Protein Mediates Host Colonization.

De Oliveira DM, Hartley-Tassell L, Everest-Dass A, Day CJ, Dabbs RA, Ve T, Kobe B, Nizet V, Packer NH, Walker MJ, Jennings MP, Sanderson-Smith ML.

MBio. 2017 Jan 24;8(1). pii: e02237-16. doi: 10.1128/mBio.02237-16.


The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data.

Liu Y, McBride R, Stoll M, Palma AS, Silva L, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Novotny MV, Packer NH, Ranzinger R, Rapp E, Rudd PM, Struwe WB, Tiemeyer M, Wells L, York WS, Zaia J, Kettner C, Paulson JC, Feizi T, Smith DF.

Glycobiology. 2016 Nov 22. [Epub ahead of print]


Stable Upconversion Nanohybrid Particles for Specific Prostate Cancer Cell Immunodetection.

Shi Y, Shi B, Dass AV, Lu Y, Sayyadi N, Kautto L, Willows RD, Chung R, Piper J, Nevalainen H, Walsh B, Jin D, Packer NH.

Sci Rep. 2016 Nov 22;6:37533. doi: 10.1038/srep37533.


Databases and Associated Tools for Glycomics and Glycoproteomics.

Lisacek F, Mariethoz J, Alocci D, Rudd PM, Abrahams JL, Campbell MP, Packer NH, Ståhle J, Widmalm G, Mullen E, Adamczyk B, Rojas-Macias MA, Jin C, Karlsson NG.

Methods Mol Biol. 2017;1503:235-264.


The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets.

Struwe WB, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Ten Feizi, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Liu Y, McBride R, Novotny MV, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Tiemeyer M, Wells L, York WS, Zaia J, Kettner C.

Glycobiology. 2016 Sep;26(9):907-910. Epub 2016 Sep 21.


Blood group antigen expression is involved in C. albicans interaction with buccal epithelial cells.

Everest-Dass AV, Kolarich D, Pascovici D, Packer NH.

Glycoconj J. 2017 Feb;34(1):31-50. doi: 10.1007/s10719-016-9726-7. Epub 2016 Sep 17.


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