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Items: 31

1.

A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution.

Packer JS, Zhu Q, Huynh C, Sivaramakrishnan P, Preston E, Dueck H, Stefanik D, Tan K, Trapnell C, Kim J, Waterston RH, Murray JI.

Science. 2019 Sep 20;365(6459). pii: eaax1971. doi: 10.1126/science.aax1971. Epub 2019 Sep 5.

PMID:
31488706
2.

Thyroid hormone regulates distinct paths to maturation in pigment cell lineages.

Saunders LM, Mishra AK, Aman AJ, Lewis VM, Toomey MB, Packer JS, Qiu X, McFaline-Figueroa JL, Corbo JC, Trapnell C, Parichy DM.

Elife. 2019 May 29;8. pii: e45181. doi: 10.7554/eLife.45181.

3.

Joint profiling of chromatin accessibility and gene expression in thousands of single cells.

Cao J, Cusanovich DA, Ramani V, Aghamirzaie D, Pliner HA, Hill AJ, Daza RM, McFaline-Figueroa JL, Packer JS, Christiansen L, Steemers FJ, Adey AC, Trapnell C, Shendure J.

Science. 2018 Sep 28;361(6409):1380-1385. doi: 10.1126/science.aau0730. Epub 2018 Aug 30.

4.

Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data.

Pliner HA, Packer JS, McFaline-Figueroa JL, Cusanovich DA, Daza RM, Aghamirzaie D, Srivatsan S, Qiu X, Jackson D, Minkina A, Adey AC, Steemers FJ, Shendure J, Trapnell C.

Mol Cell. 2018 Sep 6;71(5):858-871.e8. doi: 10.1016/j.molcel.2018.06.044. Epub 2018 Aug 2.

5.

A Protein-Truncating HSD17B13 Variant and Protection from Chronic Liver Disease.

Abul-Husn NS, Cheng X, Li AH, Xin Y, Schurmann C, Stevis P, Liu Y, Kozlitina J, Stender S, Wood GC, Stepanchick AN, Still MD, McCarthy S, O'Dushlaine C, Packer JS, Balasubramanian S, Gosalia N, Esopi D, Kim SY, Mukherjee S, Lopez AE, Fuller ED, Penn J, Chu X, Luo JZ, Mirshahi UL, Carey DJ, Still CD, Feldman MD, Small A, Damrauer SM, Rader DJ, Zambrowicz B, Olson W, Murphy AJ, Borecki IB, Shuldiner AR, Reid JG, Overton JD, Yancopoulos GD, Hobbs HH, Cohen JC, Gottesman O, Teslovich TM, Baras A, Mirshahi T, Gromada J, Dewey FE.

N Engl J Med. 2018 Mar 22;378(12):1096-1106. doi: 10.1056/NEJMoa1712191.

6.

Comprehensive single-cell transcriptional profiling of a multicellular organism.

Cao J, Packer JS, Ramani V, Cusanovich DA, Huynh C, Daza R, Qiu X, Lee C, Furlan SN, Steemers FJ, Adey A, Waterston RH, Trapnell C, Shendure J.

Science. 2017 Aug 18;357(6352):661-667. doi: 10.1126/science.aam8940.

7.

Distribution and clinical impact of functional variants in 50,726 whole-exome sequences from the DiscovEHR study.

Dewey FE, Murray MF, Overton JD, Habegger L, Leader JB, Fetterolf SN, O'Dushlaine C, Van Hout CV, Staples J, Gonzaga-Jauregui C, Metpally R, Pendergrass SA, Giovanni MA, Kirchner HL, Balasubramanian S, Abul-Husn NS, Hartzel DN, Lavage DR, Kost KA, Packer JS, Lopez AE, Penn J, Mukherjee S, Gosalia N, Kanagaraj M, Li AH, Mitnaul LJ, Adams LJ, Person TN, Praveen K, Marcketta A, Lebo MS, Austin-Tse CA, Mason-Suares HM, Bruse S, Mellis S, Phillips R, Stahl N, Murphy A, Economides A, Skelding KA, Still CD, Elmore JR, Borecki IB, Yancopoulos GD, Davis FD, Faucett WA, Gottesman O, Ritchie MD, Shuldiner AR, Reid JG, Ledbetter DH, Baras A, Carey DJ.

Science. 2016 Dec 23;354(6319). pii: aaf6814. doi: 10.1126/science.aaf6814.

PMID:
28008009
8.

CLAMMS: a scalable algorithm for calling common and rare copy number variants from exome sequencing data.

Packer JS, Maxwell EK, O'Dushlaine C, Lopez AE, Dewey FE, Chernomorsky R, Baras A, Overton JD, Habegger L, Reid JG.

Bioinformatics. 2016 Jan 1;32(1):133-5. doi: 10.1093/bioinformatics/btv547. Epub 2015 Sep 17.

9.

Pain relief using smart technology: an overview of a new patient-controlled analgesia device.

Rudolph H, Packer JS, Cade JF, Lee B, Morley P.

IEEE Trans Inf Technol Biomed. 1999 Mar;3(1):20-7.

PMID:
10719500
10.

Smart technology improves patient-controlled analgesia: a preliminary report.

Rudolph H, Cade JF, Morley PT, Packer JS, Lee B.

Anesth Analg. 1999 Nov;89(5):1226-32.

PMID:
10553839
11.

Clinical evaluation of closed-loop control of blood pressure in seriously ill patients.

McKinley S, Cade JF, Siganporia R, Evans OM, Mason DG, Packer JS.

Crit Care Med. 1991 Feb;19(2):166-70.

PMID:
1899206
12.

Stimulus miscuing and dishabituation: electrodermal activity and resource allocation.

Siddle DA, Broekhuizen D, Packer JS.

Biol Psychol. 1990 Dec;31(3):229-43.

PMID:
2132680
13.
14.

Restoration of stimulus associability, electrodermal activity, and processing resource allocation.

Packer JS, Siddle DA, Tipp C.

Biol Psychol. 1989 Apr;28(2):105-21.

PMID:
2775800
15.

Stimulus miscuing, electrodermal activity, and the allocation of processing resources.

Packer JS, Siddle DA.

Psychophysiology. 1989 Mar;26(2):192-200.

PMID:
2727221
16.

Closed-loop management of circulatory shock.

Mason DG, Packer JS, Cade JF, Siganporia RJ.

Australas Phys Eng Sci Med. 1988 Oct-Dec;11(4):133-42. No abstract available.

PMID:
3219098
17.

Comparator theories of habituation: a comment on Mackintosh's analysis.

Siddle DA, Bond NW, Packer JS.

Biol Psychol. 1988 Aug;27(1):59-63. No abstract available.

PMID:
3251561
18.

An adaptive controller for closed-loop management of blood pressure in seriously ill patients.

Packer JS, Mason DG, Cade JF, McKinley SM.

IEEE Trans Biomed Eng. 1987 Aug;34(8):612-6. No abstract available.

PMID:
3305313
19.

The effects of signal value on short- and long-term habituation.

Packer JS, Siddle DA.

Biol Psychol. 1987 Jun;24(3):261-73.

PMID:
3663800
20.

Stimulus omission and dishabituation of the electrodermal orienting response: the allocation of processing resources.

Siddle DA, Packer JS.

Psychophysiology. 1987 Mar;24(2):181-90. No abstract available.

PMID:
3602270
21.

Animal fears in the antipodes: normative data from an Australian sample.

Packer JS, Bond NW, Siddle DA.

Scand J Psychol. 1987;28(2):150-6. No abstract available.

PMID:
3685917
22.

Sodium chloride, water and urea handling in the rat renal medulla: a computer simulation.

Barrett GL, Packer JS, Davis JM.

Ren Physiol. 1986;9(4):223-40.

PMID:
3749593
23.

Analogue implementation of an automatic gain control module for automatic electrophysiological signal sensing.

Lim R, Chan W, Packer JS, Hunt D.

Australas Phys Eng Sci Med. 1985 Oct-Dec;8(4):172-7. No abstract available.

PMID:
3833191
24.

Closed-loop management of blood pressure in critically ill patients.

Mason DG, Packer JS, Cade JF, McDonald RD.

Australas Phys Eng Sci Med. 1985 Oct-Dec;8(4):164-7. No abstract available.

PMID:
3833189
25.

Simulation as a tool in medical research and development.

Packer JS.

Australas Phys Eng Sci Med. 1985 Oct-Dec;8(4):160-3. No abstract available.

PMID:
3833188
26.

Dynamic simulation of the renal medulla.

Barrett GL, Packer JS.

Med Biol Eng Comput. 1983 May;21(3):324-32. No abstract available.

PMID:
6876908
27.

A teaching aid for physiologists - simulation of kidney function.

Packer JS, Packer JE.

Physiol Teach. 1977 Sep;6(4):1-5. No abstract available.

PMID:
896402
28.

Medullary sodium depletion during diuresis--a digital computer simulation.

Packer JS, Packer JE.

Med Biol Eng Comput. 1977 Mar;15(2):134-9. No abstract available.

PMID:
192958
29.

The hepatic transport of taurocholic acid in the rat: development of a mathematical model.

Iser JH, Packer JS, Smallwood RA, Hoffman NE.

Clin Exp Pharmacol Physiol. 1976 Jan-Feb;3(1):29-36.

PMID:
971550
30.

Recycling of urea in the rat kidney: a dynamic self regulating analogue computer simulation.

Packer JS, Packer JE.

Med Biol Eng. 1974 Sep;12(5):633-46. No abstract available.

PMID:
4465586
31.

An analogue-computer simulation of the facultative water-reabsorption process in the human kidney--a vascular role for a.d.h.

Packer JS, Packer JE.

Med Biol Eng. 1973 May;11(3):310-8. No abstract available.

PMID:
4746386

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