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Items: 24

1.

Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics.

Bergauer K, Fernandez-Guerra A, Garcia JAL, Sprenger RR, Stepanauskas R, Pachiadaki MG, Jensen ON, Herndl GJ.

Proc Natl Acad Sci U S A. 2018 Jan 16;115(3):E400-E408. doi: 10.1073/pnas.1708779115. Epub 2017 Dec 18.

2.

Author Correction: Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles.

Stepanauskas R, Fergusson EA, Brown J, Poulton NJ, Tupper B, Labonté JM, Becraft ED, Brown JM, Pachiadaki MG, Povilaitis T, Thompson BP, Mascena CJ, Bellows WK, Lubys A.

Nat Commun. 2017 Dec 12;8(1):2134. doi: 10.1038/s41467-017-02128-5.

3.

Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation.

Pachiadaki MG, Sintes E, Bergauer K, Brown JM, Record NR, Swan BK, Mathyer ME, Hallam SJ, Lopez-Garcia P, Takaki Y, Nunoura T, Woyke T, Herndl GJ, Stepanauskas R.

Science. 2017 Nov 24;358(6366):1046-1051. doi: 10.1126/science.aan8260.

PMID:
29170234
4.

Free-living chemoautotrophic and particle-attached heterotrophic prokaryotes dominate microbial assemblages along a pelagic redox gradient.

Suter EA, Pachiadaki M, Taylor GT, Astor Y, Edgcomb VP.

Environ Microbiol. 2018 Feb;20(2):693-712. doi: 10.1111/1462-2920.13997. Epub 2017 Dec 7.

PMID:
29160034
5.

Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles.

Stepanauskas R, Fergusson EA, Brown J, Poulton NJ, Tupper B, Labonté JM, Becraft ED, Brown JM, Pachiadaki MG, Povilaitis T, Thompson BP, Mascena CJ, Bellows WK, Lubys A.

Nat Commun. 2017 Jul 20;8(1):84. doi: 10.1038/s41467-017-00128-z. Erratum in: Nat Commun. 2017 Dec 12;8(1):2134.

6.

Gene expression profiling of microbial activities and interactions in sediments under haloclines of E. Mediterranean deep hypersaline anoxic basins.

Edgcomb VP, Pachiadaki MG, Mara P, Kormas KA, Leadbetter ER, Bernhard JM.

ISME J. 2016 Nov;10(11):2643-2657. doi: 10.1038/ismej.2016.58. Epub 2016 Apr 19.

7.

Fungal and Prokaryotic Activities in the Marine Subsurface Biosphere at Peru Margin and Canterbury Basin Inferred from RNA-Based Analyses and Microscopy.

Pachiadaki MG, Rédou V, Beaudoin DJ, Burgaud G, Edgcomb VP.

Front Microbiol. 2016 Jun 9;7:846. doi: 10.3389/fmicb.2016.00846. eCollection 2016.

8.

Metazoans of redoxcline sediments in Mediterranean deep-sea hypersaline anoxic basins.

Bernhard JM, Morrison CR, Pape E, Beaudoin DJ, Todaro MA, Pachiadaki MG, Kormas KA, Edgcomb VP.

BMC Biol. 2015 Dec 10;13:105. doi: 10.1186/s12915-015-0213-6.

9.

Combined Culture-Based and Culture-Independent Approaches Provide Insights into Diversity of Jakobids, an Extremely Plesiomorphic Eukaryotic Lineage.

Pánek T, Táborský P, Pachiadaki MG, Hroudová M, Vlček Č, Edgcomb VP, Čepička I.

Front Microbiol. 2015 Nov 18;6:1288. doi: 10.3389/fmicb.2015.01288. eCollection 2015.

10.

Inter-comparison of the potentially active prokaryotic communities in the halocline sediments of Mediterranean deep-sea hypersaline basins.

Kormas KA, Pachiadaki MG, Karayanni H, Leadbetter ER, Bernhard JM, Edgcomb VP.

Extremophiles. 2015 Sep;19(5):949-60. doi: 10.1007/s00792-015-0770-1. Epub 2015 Jul 16.

PMID:
26174531
11.

Protist Community Grazing on Prokaryotic Prey in Deep Ocean Water Masses.

Rocke E, Pachiadaki MG, Cobban A, Kujawinski EB, Edgcomb VP.

PLoS One. 2015 Apr 20;10(4):e0124505. doi: 10.1371/journal.pone.0124505. eCollection 2015.

12.

Size-fractionated diversity of eukaryotic microbial communities in the Eastern Tropical North Pacific oxygen minimum zone.

Duret MT, Pachiadaki MG, Stewart FJ, Sarode N, Christaki U, Monchy S, Srivastava A, Edgcomb VP.

FEMS Microbiol Ecol. 2015 May;91(5). pii: fiv037. doi: 10.1093/femsec/fiv037. Epub 2015 Apr 1.

PMID:
25873468
13.

Depth shapes α- and β-diversities of microbial eukaryotes in surficial sediments of coastal ecosystems.

Gong J, Shi F, Ma B, Dong J, Pachiadaki M, Zhang X, Edgcomb VP.

Environ Microbiol. 2015 Oct;17(10):3722-37. doi: 10.1111/1462-2920.12763. Epub 2015 Feb 11.

PMID:
25581721
14.

Benthic protists and fungi of Mediterranean deep hypsersaline anoxic basin redoxcline sediments.

Bernhard JM, Kormas K, Pachiadaki MG, Rocke E, Beaudoin DJ, Morrison C, Visscher PT, Cobban A, Starczak VR, Edgcomb VP.

Front Microbiol. 2014 Nov 12;5:605. doi: 10.3389/fmicb.2014.00605. eCollection 2014.

15.

In-depth analyses of deep subsurface sediments using 454-pyrosequencing reveals a reservoir of buried fungal communities at record-breaking depths.

Rédou V, Ciobanu MC, Pachiadaki MG, Edgcomb V, Alain K, Barbier G, Burgaud G.

FEMS Microbiol Ecol. 2014 Dec;90(3):908-21. doi: 10.1111/1574-6941.12447. Epub 2014 Nov 17.

16.

Unveiling microbial activities along the halocline of Thetis, a deep-sea hypersaline anoxic basin.

Pachiadaki MG, Yakimov MM, LaCono V, Leadbetter E, Edgcomb V.

ISME J. 2014 Dec;8(12):2478-89. doi: 10.1038/ismej.2014.100. Epub 2014 Jun 20.

17.

Ciliates along oxyclines of permanently stratified marine water columns.

Edgcomb VP, Pachiadaki M.

J Eukaryot Microbiol. 2014 Jul-Aug;61(4):434-45. doi: 10.1111/jeu.12122. Epub 2014 Jun 3.

PMID:
24801774
18.

Protistan grazing in a meromictic freshwater lake with anoxic bottom water.

Oikonomou A, Pachiadaki M, Stoeck T.

FEMS Microbiol Ecol. 2014 Mar;87(3):691-703. doi: 10.1111/1574-6941.12257. Epub 2013 Dec 5.

19.

Changes of bacterioplankton apparent species richness in two ornamental fish aquaria.

Vlahos N, Kormas KA, Pachiadaki MG, Meziti A, Hotos GN, Mente E.

Springerplus. 2013 Dec;2(1):66. doi: 10.1186/2193-1801-2-66. Epub 2013 Feb 23.

20.

Low bacterial diversity and high labile organic matter concentrations in the sediments of the Medee deep-sea hypersaline anoxic basin.

Akoumianaki I, Nomaki H, Pachiadaki M, Kormas KA, Kitazato H, Tokuyama H.

Microbes Environ. 2012;27(4):504-8. Epub 2012 Apr 14.

21.

Microbial eukaryote life in the new hypersaline deep-sea basin Thetis.

Stock A, Breiner HW, Pachiadaki M, Edgcomb V, Filker S, La Cono V, Yakimov MM, Stoeck T.

Extremophiles. 2012 Jan;16(1):21-34. doi: 10.1007/s00792-011-0401-4. Epub 2011 Oct 19.

PMID:
22009262
22.

Diversity and spatial distribution of prokaryotic communities along a sediment vertical profile of a deep-sea mud volcano.

Pachiadaki MG, Kallionaki A, Dählmann A, De Lange GJ, Kormas KA.

Microb Ecol. 2011 Oct;62(3):655-68. doi: 10.1007/s00248-011-9855-2. Epub 2011 May 3.

PMID:
21538105
23.

Prokaryotic community structure and diversity in the sediments of an active submarine mud volcano (Kazan mud volcano, East Mediterranean Sea).

Pachiadaki MG, Lykousis V, Stefanou EG, Kormas KA.

FEMS Microbiol Ecol. 2010 Jun;72(3):429-44. doi: 10.1111/j.1574-6941.2010.00857.x. Epub 2010 Mar 3.

24.

Changes of the bacterial assemblages throughout an urban drinking water distribution system.

Kormas KA, Neofitou C, Pachiadaki M, Koufostathi E.

Environ Monit Assess. 2010 Jun;165(1-4):27-38. doi: 10.1007/s10661-009-0924-7. Epub 2009 Apr 30.

PMID:
19404754

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