Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 239

1.

The small things can matter.

Pace NR.

PLoS Biol. 2018 Aug 24;16(8):e3000009. doi: 10.1371/journal.pbio.3000009. eCollection 2018 Aug.

2.

Longitudinal and Source-to-Tap New Orleans, LA, U.S.A. Drinking Water Microbiology.

Hull NM, Holinger EP, Ross KA, Robertson CE, Harris JK, Stevens MJ, Pace NR.

Environ Sci Technol. 2017 Apr 18;51(8):4220-4229. doi: 10.1021/acs.est.6b06064. Epub 2017 Apr 7.

PMID:
28296394
3.

Factors Influencing Bacterial Diversity and Community Composition in Municipal Drinking Waters in the Ohio River Basin, USA.

Stanish LF, Hull NM, Robertson CE, Harris JK, Stevens MJ, Spear JR, Pace NR.

PLoS One. 2016 Jun 30;11(6):e0157966. doi: 10.1371/journal.pone.0157966. eCollection 2016.

4.

Microbial aerosol liberation from soiled textiles isolated during routine residuals handling in a modern health care setting.

Handorean A, Robertson CE, Harris JK, Frank D, Hull N, Kotter C, Stevens MJ, Baumgardner D, Pace NR, Hernandez M.

Microbiome. 2015 Dec 9;3:72. doi: 10.1186/s40168-015-0132-3.

5.

Esophageal microbiome in eosinophilic esophagitis.

Harris JK, Fang R, Wagner BD, Choe HN, Kelly CJ, Schroeder S, Moore W, Stevens MJ, Yeckes A, Amsden K, Kagalwalla AF, Zalewski A, Hirano I, Gonsalves N, Henry LN, Masterson JC, Robertson CE, Leung DY, Pace NR, Ackerman SJ, Furuta GT, Fillon SA.

PLoS One. 2015 May 28;10(5):e0128346. doi: 10.1371/journal.pone.0128346. eCollection 2015.

6.

Effect of monochloramine treatment on the microbial ecology of Legionella and associated bacterial populations in a hospital hot water system.

Baron JL, Harris JK, Holinger EP, Duda S, Stevens MJ, Robertson CE, Ross KA, Pace NR, Stout JE.

Syst Appl Microbiol. 2015 May;38(3):198-205. doi: 10.1016/j.syapm.2015.02.006. Epub 2015 Mar 20.

PMID:
25840824
7.

High-resolution microbial community succession of microbially induced concrete corrosion in working sanitary manholes.

Ling AL, Robertson CE, Harris JK, Frank DN, Kotter CV, Stevens MJ, Pace NR, Hernandez MT.

PLoS One. 2015 Mar 6;10(3):e0116400. doi: 10.1371/journal.pone.0116400. eCollection 2015.

8.

Molecular analysis of single room humidifier bacteriology.

Hull NM, Reens AL, Robertson CE, Stanish LF, Harris JK, Stevens MJ, Frank DN, Kotter C, Pace NR.

Water Res. 2015 Feb 1;69:318-327. doi: 10.1016/j.watres.2014.11.024. Epub 2014 Nov 26.

PMID:
25574772
9.

Specific microbiome changes in a mouse model of parenteral nutrition associated liver injury and intestinal inflammation.

Harris JK, El Kasmi KC, Anderson AL, Devereaux MW, Fillon SA, Robertson CE, Wagner BD, Stevens MJ, Pace NR, Sokol RJ.

PLoS One. 2014 Oct 20;9(10):e110396. doi: 10.1371/journal.pone.0110396. eCollection 2014.

10.

Carbon dioxide and hydrogen sulfide associations with regional bacterial diversity patterns in microbially induced concrete corrosion.

Ling AL, Robertson CE, Harris JK, Frank DN, Kotter CV, Stevens MJ, Pace NR, Hernandez MT.

Environ Sci Technol. 2014 Jul 1;48(13):7357-64. doi: 10.1021/es500763e. Epub 2014 Jun 16.

PMID:
24842376
11.

Molecular analysis of point-of-use municipal drinking water microbiology.

Holinger EP, Ross KA, Robertson CE, Stevens MJ, Harris JK, Pace NR.

Water Res. 2014 Feb 1;49:225-35. doi: 10.1016/j.watres.2013.11.027. Epub 2013 Nov 27. Erratum in: Water Res. 2014 Jun 1;56:367.

PMID:
24333849
12.

Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data.

Robertson CE, Harris JK, Wagner BD, Granger D, Browne K, Tatem B, Feazel LM, Park K, Pace NR, Frank DN.

Bioinformatics. 2013 Dec 1;29(23):3100-1. doi: 10.1093/bioinformatics/btt526. Epub 2013 Sep 10.

13.

Culture-independent analysis of aerosol microbiology in a metropolitan subway system.

Robertson CE, Baumgartner LK, Harris JK, Peterson KL, Stevens MJ, Frank DN, Pace NR.

Appl Environ Microbiol. 2013 Jun;79(11):3485-93. doi: 10.1128/AEM.00331-13. Epub 2013 Mar 29.

14.

Tetracycline resistance and Class 1 integron genes associated with indoor and outdoor aerosols.

Ling AL, Pace NR, Hernandez MT, LaPara TM.

Environ Sci Technol. 2013 May 7;47(9):4046-52. doi: 10.1021/es400238g. Epub 2013 Apr 10.

PMID:
23517146
15.

Retrospective. Carl R. Woese (1928-2012).

Goldenfeld N, Pace NR.

Science. 2013 Feb 8;339(6120):661. doi: 10.1126/science.1235219. No abstract available.

PMID:
23393257
16.

Novel device to sample the esophageal microbiome--the esophageal string test.

Fillon SA, Harris JK, Wagner BD, Kelly CJ, Stevens MJ, Moore W, Fang R, Schroeder S, Masterson JC, Robertson CE, Pace NR, Ackerman SJ, Furuta GT.

PLoS One. 2012;7(9):e42938. doi: 10.1371/journal.pone.0042938. Epub 2012 Sep 5.

17.

Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat.

Harris JK, Caporaso JG, Walker JJ, Spear JR, Gold NJ, Robertson CE, Hugenholtz P, Goodrich J, McDonald D, Knights D, Marshall P, Tufo H, Knight R, Pace NR.

ISME J. 2013 Jan;7(1):50-60. doi: 10.1038/ismej.2012.79. Epub 2012 Jul 26.

18.

Inflammatory bowel diseases phenotype, C. difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition.

Li E, Hamm CM, Gulati AS, Sartor RB, Chen H, Wu X, Zhang T, Rohlf FJ, Zhu W, Gu C, Robertson CE, Pace NR, Boedeker EC, Harpaz N, Yuan J, Weinstock GM, Sodergren E, Frank DN.

PLoS One. 2012;7(6):e26284. doi: 10.1371/journal.pone.0026284. Epub 2012 Jun 13.

19.

Altered vaginal microbiota are associated with perinatal mother-to-child transmission of HIV in African women from Burkina Faso.

Frank DN, Manigart O, Leroy V, Meda N, Valéa D, Zhang W, Dabis F, Pace NR, Van de Perre P, Janoff EN.

J Acquir Immune Defic Syndr. 2012 Jul 1;60(3):299-306. doi: 10.1097/QAI.0b013e31824e4bdb.

20.

Phototrophic phylotypes dominate mesothermal microbial mats associated with hot springs in Yellowstone National Park.

Ross KA, Feazel LM, Robertson CE, Fathepure BZ, Wright KE, Turk-Macleod RM, Chan MM, Held NL, Spear JR, Pace NR.

Microb Ecol. 2012 Jul;64(1):162-70. doi: 10.1007/s00248-012-0012-3. Epub 2012 Feb 11.

PMID:
22327269
21.

Phylogeny and beyond: Scientific, historical, and conceptual significance of the first tree of life.

Pace NR, Sapp J, Goldenfeld N.

Proc Natl Acad Sci U S A. 2012 Jan 24;109(4):1011-8. doi: 10.1073/pnas.1109716109. Epub 2012 Jan 17.

22.

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, Sterk P, Arumugam M, Bailey M, Baumgartner L, Birren BW, Blaser MJ, Bonazzi V, Booth T, Bork P, Bushman FD, Buttigieg PL, Chain PS, Charlson E, Costello EK, Huot-Creasy H, Dawyndt P, DeSantis T, Fierer N, Fuhrman JA, Gallery RE, Gevers D, Gibbs RA, San Gil I, Gonzalez A, Gordon JI, Guralnick R, Hankeln W, Highlander S, Hugenholtz P, Jansson J, Kau AL, Kelley ST, Kennedy J, Knights D, Koren O, Kuczynski J, Kyrpides N, Larsen R, Lauber CL, Legg T, Ley RE, Lozupone CA, Ludwig W, Lyons D, Maguire E, Methé BA, Meyer F, Muegge B, Nakielny S, Nelson KE, Nemergut D, Neufeld JD, Newbold LK, Oliver AE, Pace NR, Palanisamy G, Peplies J, Petrosino J, Proctor L, Pruesse E, Quast C, Raes J, Ratnasingham S, Ravel J, Relman DA, Assunta-Sansone S, Schloss PD, Schriml L, Sinha R, Smith MI, Sodergren E, Spo A, Stombaugh J, Tiedje JM, Ward DV, Weinstock GM, Wendel D, White O, Whiteley A, Wilke A, Wortman JR, Yatsunenko T, Glöckner FO.

Nat Biotechnol. 2011 May;29(5):415-20. doi: 10.1038/nbt.1823.

23.

Solution structure of RNase P RNA.

Kazantsev AV, Rambo RP, Karimpour S, Santalucia J Jr, Tainer JA, Pace NR.

RNA. 2011 Jun;17(6):1159-71. doi: 10.1261/rna.2563511. Epub 2011 Apr 29.

24.

Disease phenotype and genotype are associated with shifts in intestinal-associated microbiota in inflammatory bowel diseases.

Frank DN, Robertson CE, Hamm CM, Kpadeh Z, Zhang T, Chen H, Zhu W, Sartor RB, Boedeker EC, Harpaz N, Pace NR, Li E.

Inflamm Bowel Dis. 2011 Jan;17(1):179-84. doi: 10.1002/ibd.21339. Epub 2010 Sep 13.

25.

The human nasal microbiota and Staphylococcus aureus carriage.

Frank DN, Feazel LM, Bessesen MT, Price CS, Janoff EN, Pace NR.

PLoS One. 2010 May 17;5(5):e10598. doi: 10.1371/journal.pone.0010598.

26.

Climate change and the integrity of science.

Gleick PH, Adams RM, Amasino RM, Anders E, Anderson DJ, Anderson WW, Anselin LE, Arroyo MK, Asfaw B, Ayala FJ, Bax A, Bebbington AJ, Bell G, Bennett MV, Bennetzen JL, Berenbaum MR, Berlin OB, Bjorkman PJ, Blackburn E, Blamont JE, Botchan MR, Boyer JS, Boyle EA, Branton D, Briggs SP, Briggs WR, Brill WJ, Britten RJ, Broecker WS, Brown JH, Brown PO, Brunger AT, Cairns J Jr, Canfield DE, Carpenter SR, Carrington JC, Cashmore AR, Castilla JC, Cazenave A, Chapin FS 3rd, Ciechanover AJ, Clapham DE, Clark WC, Clayton RN, Coe MD, Conwell EM, Cowling EB, Cowling RM, Cox CS, Croteau RB, Crothers DM, Crutzen PJ, Daily GC, Dalrymple GB, Dangl JL, Darst SA, Davies DR, Davis MB, De Camilli PV, Dean C, DeFries RS, Deisenhofer J, Delmer DP, DeLong EF, DeRosier DJ, Diener TO, Dirzo R, Dixon JE, Donoghue MJ, Doolittle RF, Dunne T, Ehrlich PR, Eisenstadt SN, Eisner T, Emanuel KA, Englander SW, Ernst WG, Falkowski PG, Feher G, Ferejohn JA, Fersht A, Fischer EH, Fischer R, Flannery KV, Frank J, Frey PA, Fridovich I, Frieden C, Futuyma DJ, Gardner WR, Garrett CJ, Gilbert W, Goldberg RB, Goodenough WH, Goodman CS, Goodman M, Greengard P, Hake S, Hammel G, Hanson S, Harrison SC, Hart SR, Hartl DL, Haselkorn R, Hawkes K, Hayes JM, Hille B, Hökfelt T, House JS, Hout M, Hunten DM, Izquierdo IA, Jagendorf AT, Janzen DH, Jeanloz R, Jencks CS, Jury WA, Kaback HR, Kailath T, Kay P, Kay SA, Kennedy D, Kerr A, Kessler RC, Khush GS, Kieffer SW, Kirch PV, Kirk K, Kivelson MG, Klinman JP, Klug A, Knopoff L, Kornberg H, Kutzbach JE, Lagarias JC, Lambeck K, Landy A, Langmuir CH, Larkins BA, Le Pichon XT, Lenski RE, Leopold EB, Levin SA, Levitt M, Likens GE, Lippincott-Schwartz J, Lorand L, Lovejoy CO, Lynch M, Mabogunje AL, Malone TF, Manabe S, Marcus J, Massey DS, McWilliams JC, Medina E, Melosh HJ, Meltzer DJ, Michener CD, Miles EL, Mooney HA, Moore PB, Morel FM, Mosley-Thompson ES, Moss B, Munk WH, Myers N, Nair GB, Nathans J, Nester EW, Nicoll RA, Novick RP, O'Connell JF, Olsen PE, Opdyke ND, Oster GF, Ostrom E, Pace NR, Paine RT, Palmiter RD, Pedlosky J, Petsko GA, Pettengill GH, Philander SG, Piperno DR, Pollard TD, Price PB Jr, Reichard PA, Reskin BF, Ricklefs RE, Rivest RL, Roberts JD, Romney AK, Rossmann MG, Russell DW, Rutter WJ, Sabloff JA, Sagdeev RZ, Sahlins MD, Salmond A, Sanes JR, Schekman R, Schellnhuber J, Schindler DW, Schmitt J, Schneider SH, Schramm VL, Sederoff RR, Shatz CJ, Sherman F, Sidman RL, Sieh K, Simons EL, Singer BH, Singer MF, Skyrms B, Sleep NH, Smith BD, Snyder SH, Sokal RR, Spencer CS, Steitz TA, Strier KB, Südhof TC, Taylor SS, Terborgh J, Thomas DH, Thompson LG, Tjian RT, Turner MG, Uyeda S, Valentine JW, Valentine JS, Van Etten JL, van Holde KE, Vaughan M, Verba S, von Hippel PH, Wake DB, Walker A, Walker JE, Watson EB, Watson PJ, Weigel D, Wessler SR, West-Eberhard MJ, White TD, Wilson WJ, Wolfenden RV, Wood JA, Woodwell GM, Wright HE Jr, Wu C, Wunsch C, Zoback ML.

Science. 2010 May 7;328(5979):689-90. doi: 10.1126/science.328.5979.689. No abstract available. Erratum in: Science. 2010 May 14;328(5980):826.

27.

Microbial species richness and metabolic activities in hypersaline microbial mats: insight into biosignature formation through lithification.

Baumgartner LK, Dupraz C, Buckley DH, Spear JR, Pace NR, Visscher PT.

Astrobiology. 2009 Nov;9(9):861-74. doi: 10.1089/ast.2008.0329.

PMID:
19968463
28.

Mapping the tree of life: progress and prospects.

Pace NR.

Microbiol Mol Biol Rev. 2009 Dec;73(4):565-76. doi: 10.1128/MMBR.00033-09. Review.

29.

Culture-independent microbiological analysis of foley urinary catheter biofilms.

Frank DN, Wilson SS, St Amand AL, Pace NR.

PLoS One. 2009 Nov 12;4(11):e7811. doi: 10.1371/journal.pone.0007811.

30.

Opportunistic pathogens enriched in showerhead biofilms.

Feazel LM, Baumgartner LK, Peterson KL, Frank DN, Harris JK, Pace NR.

Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16393-9. doi: 10.1073/pnas.0908446106. Epub 2009 Sep 14.

31.

Microbial diversity in modern marine stromatolites, Highborne Cay, Bahamas.

Baumgartner LK, Spear JR, Buckley DH, Pace NR, Reid RP, Dupraz C, Visscher PT.

Environ Microbiol. 2009 Oct;11(10):2710-9. doi: 10.1111/j.1462-2920.2009.01998.x. Epub 2009 Jul 6.

PMID:
19601956
32.

Microbial diversity in chronic open wounds.

Frank DN, Wysocki A, Specht-Glick DD, Rooney A, Feldman RA, St Amand AL, Pace NR, Trent JD.

Wound Repair Regen. 2009 Mar-Apr;17(2):163-72. doi: 10.1111/j.1524-475X.2009.00472.x.

PMID:
19320883
33.

Problems with "procaryote".

Pace NR.

J Bacteriol. 2009 Apr;191(7):2008-10; discussion 2011. doi: 10.1128/JB.01224-08. Epub 2009 Jan 23. No abstract available.

34.

Rebuttal: the modern concept of the procaryote.

Pace NR.

J Bacteriol. 2009 Apr;191(7):2006-7. doi: 10.1128/JB.01296-08. Epub 2009 Jan 23. No abstract available.

35.

Diversity and stratification of archaea in a hypersaline microbial mat.

Robertson CE, Spear JR, Harris JK, Pace NR.

Appl Environ Microbiol. 2009 Apr;75(7):1801-10. doi: 10.1128/AEM.01811-08. Epub 2008 Dec 29.

36.

Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA.

Kazantsev AV, Krivenko AA, Pace NR.

RNA. 2009 Feb;15(2):266-76. doi: 10.1261/rna.1331809. Epub 2008 Dec 17.

37.

Comparative molecular analysis of endoevaporitic microbial communities.

Sahl JW, Pace NR, Spear JR.

Appl Environ Microbiol. 2008 Oct;74(20):6444-6. doi: 10.1128/AEM.00879-08. Epub 2008 Aug 29.

38.

Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases.

Peterson DA, Frank DN, Pace NR, Gordon JI.

Cell Host Microbe. 2008 Jun 12;3(6):417-27. doi: 10.1016/j.chom.2008.05.001. Review.

39.

Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat.

Kunin V, Raes J, Harris JK, Spear JR, Walker JJ, Ivanova N, von Mering C, Bebout BM, Pace NR, Bork P, Hugenholtz P.

Mol Syst Biol. 2008;4:198. doi: 10.1038/msb.2008.35. Epub 2008 Jun 3.

40.

Molecular identification of bacteria in bronchoalveolar lavage fluid from children with cystic fibrosis.

Harris JK, De Groote MA, Sagel SD, Zemanick ET, Kapsner R, Penvari C, Kaess H, Deterding RR, Accurso FJ, Pace NR.

Proc Natl Acad Sci U S A. 2007 Dec 18;104(51):20529-33. Epub 2007 Dec 11.

41.

Gastrointestinal microbiology enters the metagenomics era.

Frank DN, Pace NR.

Curr Opin Gastroenterol. 2008 Jan;24(1):4-10. Review.

PMID:
18043225
42.

Eucaryotic diversity in a hypersaline microbial mat.

Feazel LM, Spear JR, Berger AB, Harris JK, Frank DN, Ley RE, Pace NR.

Appl Environ Microbiol. 2008 Jan;74(1):329-32. Epub 2007 Nov 9.

43.

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases.

Frank DN, St Amand AL, Feldman RA, Boedeker EC, Harpaz N, Pace NR.

Proc Natl Acad Sci U S A. 2007 Aug 21;104(34):13780-5. Epub 2007 Aug 15.

44.

Microbial community biofabrics in a geothermal mine adit.

Spear JR, Barton HA, Robertson CE, Francis CA, Pace NR.

Appl Environ Microbiol. 2007 Oct;73(19):6172-80. Epub 2007 Aug 10.

45.

Endolithic microbial ecosystems.

Walker JJ, Pace NR.

Annu Rev Microbiol. 2007;61:331-47. Review.

PMID:
17506683
46.

Phylogenetic composition of Rocky Mountain endolithic microbial ecosystems.

Walker JJ, Pace NR.

Appl Environ Microbiol. 2007 Jun;73(11):3497-504. Epub 2007 Apr 6.

47.

Structure and function of eukaryotic Ribonuclease P RNA.

Marquez SM, Chen JL, Evans D, Pace NR.

Mol Cell. 2006 Nov 3;24(3):445-56.

48.

Relationships between Mycobacterium isolates from patients with pulmonary mycobacterial infection and potting soils.

De Groote MA, Pace NR, Fulton K, Falkinham JO 3rd.

Appl Environ Microbiol. 2006 Dec;72(12):7602-6. Epub 2006 Oct 20.

49.

Molecular-phylogenetic analyses of human gastrointestinal microbiota.

Frank DN, Pace NR.

Curr Opin Gastroenterol. 2001 Jan;17(1):52-7.

PMID:
17031150
50.

Culture-independent analysis of indomethacin-induced alterations in the rat gastrointestinal microbiota.

Dalby AB, Frank DN, St Amand AL, Bendele AM, Pace NR.

Appl Environ Microbiol. 2006 Oct;72(10):6707-15.

Supplemental Content

Support Center