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Items: 1 to 50 of 483

1.

Ideal isotropic auxetic networks from random networks.

Reid DR, Pashine N, Bowen AS, Nagel SR, de Pablo JJ.

Soft Matter. 2019 Oct 28;15(40):8084-8091. doi: 10.1039/c9sm01241a. Epub 2019 Oct 2.

PMID:
31577317
2.

Serologic responses to the PfEMP1 DBL-CIDR head structure may be a better indicator of malaria exposure than those to the DBL-α tag.

Stucke EM, Niangaly A, Berry AA, Bailey JA, Coulibaly D, Ouattara A, Lyke KE, Laurens MB, Dara A, Adams M, Pablo J, Jasinskas A, Nakajima R, Zhou AE, Agrawal S, Friedman-Klabanoff DJ, Takala-Harrison S, Kouriba B, Kone AK, Rowe JA, Doumbo OK, Felgner PL, Thera MA, Plowe CV, Travassos MA.

Malar J. 2019 Aug 13;18(1):273. doi: 10.1186/s12936-019-2905-9.

3.

Genetics and genetic counseling in psychiatry: Results from an opinion survey of professionals and users.

Martorell L, Sanfeliu A, Blázquez A, Lojo E, Cortés MJ, de Pablo J, Vilella E.

Mol Genet Genomic Med. 2019 Aug;7(8):e830. doi: 10.1002/mgg3.830. Epub 2019 Jun 29.

4.

Role of Defects in Ion Transport in Block Copolymer Electrolytes.

Kambe Y, Arges CG, Czaplewski DA, Dolejsi M, Krishnan S, Stoykovich MP, de Pablo JJ, Nealey PF.

Nano Lett. 2019 Jul 10;19(7):4684-4691. doi: 10.1021/acs.nanolett.9b01758. Epub 2019 Jun 28.

PMID:
31250653
5.

1CPN: A coarse-grained multi-scale model of chromatin.

Lequieu J, Córdoba A, Moller J, de Pablo JJ.

J Chem Phys. 2019 Jun 7;150(21):215102. doi: 10.1063/1.5092976.

PMID:
31176328
6.

Structure and proton conduction in sulfonated poly(ether ether ketone) semi-permeable membranes: a multi-scale computational approach.

Molina J, de Pablo JJ, Hernández-Ortiz JP.

Phys Chem Chem Phys. 2019 May 8;21(18):9362-9375. doi: 10.1039/c9cp00598f.

PMID:
30994661
7.

Electronic structure at coarse-grained resolutions from supervised machine learning.

Jackson NE, Bowen AS, Antony LW, Webb MA, Vishwanath V, de Pablo JJ.

Sci Adv. 2019 Mar 22;5(3):eaav1190. doi: 10.1126/sciadv.aav1190. eCollection 2019 Mar.

8.

Antibodies to Peptides in Semiconserved Domains of RIFINs and STEVORs Correlate with Malaria Exposure.

Zhou AE, Berry AA, Bailey JA, Pike A, Dara A, Agrawal S, Stucke EM, Ouattara A, Coulibaly D, Lyke KE, Laurens MB, Adams M, Takala-Harrison S, Pablo J, Jasinskas A, Nakajima R, Niangaly A, Kouriba B, Kone AK, Rowe JA, Doumbo OK, Thera MA, Patel JJ, Tan JC, Felgner PL, Plowe CV, Travassos MA.

mSphere. 2019 Mar 20;4(2). pii: e00097-19. doi: 10.1128/mSphere.00097-19.

9.

Free energy of metal-organic framework self-assembly.

Colón YJ, Guo AZ, Antony LW, Hoffmann KQ, de Pablo JJ.

J Chem Phys. 2019 Mar 14;150(10):104502. doi: 10.1063/1.5063588.

PMID:
30876355
10.

Influence of Homopolymer Addition in Templated Assembly of Cylindrical Block Copolymers.

Doise J, Bezik C, Hori M, de Pablo JJ, Gronheid R.

ACS Nano. 2019 Apr 23;13(4):4073-4082. doi: 10.1021/acsnano.8b08382. Epub 2019 Mar 21.

PMID:
30869863
11.

The Free Energy Landscape of Internucleosome Interactions and Its Relation to Chromatin Fiber Structure.

Moller J, Lequieu J, de Pablo JJ.

ACS Cent Sci. 2019 Feb 27;5(2):341-348. doi: 10.1021/acscentsci.8b00836. Epub 2019 Jan 24.

12.

Degenerate conic anchoring and colloidal elastic dipole-hexadecapole transformations.

Zhou Y, Senyuk B, Zhang R, Smalyukh II, de Pablo JJ.

Nat Commun. 2019 Mar 1;10(1):1000. doi: 10.1038/s41467-019-08645-9.

13.

Thermally reconfigurable Janus droplets with nematic liquid crystalline and isotropic perfluorocarbon oil compartments.

Wang X, Zhou Y, Kim YK, Tsuei M, Yang Y, de Pablo JJ, Abbott NL.

Soft Matter. 2019 Mar 20;15(12):2580-2590. doi: 10.1039/c8sm02600a.

PMID:
30816895
14.

Rapid immunodiagnostics of multiple viral infections in an acoustic microstreaming device with serum and saliva samples.

Garg N, Boyle D, Randall A, Teng A, Pablo J, Liang X, Camerini D, Lee AP.

Lab Chip. 2019 Apr 23;19(9):1524-1533. doi: 10.1039/c8lc01303a.

PMID:
30806409
15.

Sculpting stable structures in pure liquids.

Emeršič T, Zhang R, Kos Ž, Čopar S, Osterman N, de Pablo JJ, Tkalec U.

Sci Adv. 2019 Feb 15;5(2):eaav4283. doi: 10.1126/sciadv.aav4283. eCollection 2019 Feb.

16.

Perfection in Nucleation and Growth of Blue-Phase Single Crystals: Small Free-Energy Required to Self-Assemble at Specific Lattice Orientation.

Li X, Martínez-González JA, Park K, Yu C, Zhou Y, de Pablo JJ, Nealey PF.

ACS Appl Mater Interfaces. 2019 Mar 6;11(9):9487-9495. doi: 10.1021/acsami.8b18078. Epub 2019 Feb 25.

PMID:
30763069
17.

Extracting collective motions underlying nucleosome dynamics via nonlinear manifold learning.

Guo AZ, Lequieu J, de Pablo JJ.

J Chem Phys. 2019 Feb 7;150(5):054902. doi: 10.1063/1.5063851.

PMID:
30736679
18.

A pH-Triggered, Self-Assembled, and Bioprintable Hybrid Hydrogel Scaffold for Mesenchymal Stem Cell Based Bone Tissue Engineering.

Zhao C, Qazvini NT, Sadati M, Zeng Z, Huang S, De La Lastra AL, Zhang L, Feng Y, Liu W, Huang B, Zhang B, Dai Z, Shen Y, Wang X, Luo W, Liu B, Lei Y, Ye Z, Zhao L, Cao D, Yang L, Chen X, Athiviraham A, Lee MJ, Wolf JM, Reid RR, Tirrell M, Huang W, de Pablo JJ, He TC.

ACS Appl Mater Interfaces. 2019 Mar 6;11(9):8749-8762. doi: 10.1021/acsami.8b19094. Epub 2019 Feb 25.

19.

Pair and many-body interactions between ligated Au nanoparticles.

Liepold C, Smith A, Lin B, de Pablo J, Rice SA.

J Chem Phys. 2019 Jan 28;150(4):044904. doi: 10.1063/1.5064545.

PMID:
30709285
20.

Fluctuations and phase transitions of uniaxial and biaxial liquid crystals using a theoretically informed Monte Carlo and a Landau free energy density.

Villada-Gil S, Palacio-Betancur V, Armas-Pérez JC, de Pablo JJ, Hernández-Ortiz JP.

J Phys Condens Matter. 2019 May 1;31(17):175101. doi: 10.1088/1361-648X/ab0394. Epub 2019 Jan 31.

PMID:
30703761
21.

Qresp, a tool for curating, discovering and exploring reproducible scientific papers.

Govoni M, Munakami M, Tanikanti A, Skone JH, Runesha HB, Giberti F, de Pablo J, Galli G.

Sci Data. 2019 Jan 29;6:190002. doi: 10.1038/sdata.2019.2.

22.

Anisotropic Vapor-Deposited Glasses: Hybrid Organic Solids.

Ediger MD, de Pablo J, Yu L.

Acc Chem Res. 2019 Feb 19;52(2):407-414. doi: 10.1021/acs.accounts.8b00513. Epub 2019 Jan 23.

PMID:
30673208
23.

Panproteome-wide analysis of antibody responses to whole cell pneumococcal vaccination.

Campo JJ, Le TQ, Pablo JV, Hung C, Teng AA, Tettelin H, Tate A, Hanage WP, Alderson MR, Liang X, Malley R, Lipsitch M, Croucher NJ.

Elife. 2018 Dec 28;7. pii: e37015. doi: 10.7554/eLife.37015.

24.

Origin of Anisotropic Molecular Packing in Vapor-Deposited Alq3 Glasses.

Bagchi K, Jackson NE, Gujral A, Huang C, Toney MF, Yu L, de Pablo JJ, Ediger MD.

J Phys Chem Lett. 2019 Jan 17;10(2):164-170. doi: 10.1021/acs.jpclett.8b03582. Epub 2018 Dec 31.

PMID:
30582803
25.

Graph-Based Approach to Systematic Molecular Coarse-Graining.

Webb MA, Delannoy JY, de Pablo JJ.

J Chem Theory Comput. 2019 Feb 12;15(2):1199-1208. doi: 10.1021/acs.jctc.8b00920. Epub 2018 Dec 31.

PMID:
30557028
26.

Design, synthesis and characterization of novel N-heterocyclic-1-benzyl-1H-benzo[d]imidazole-2-amines as selective TRPC5 inhibitors leading to the identification of the selective compound, AC1903.

Sharma SH, Pablo JL, Montesinos MS, Greka A, Hopkins CR.

Bioorg Med Chem Lett. 2019 Jan 15;29(2):155-159. doi: 10.1016/j.bmcl.2018.12.007. Epub 2018 Dec 4.

PMID:
30538066
27.

Tenfold increase in the photostability of an azobenzene guest in vapor-deposited glass mixtures.

Qiu Y, Antony LW, Torkelson JM, de Pablo JJ, Ediger MD.

J Chem Phys. 2018 Nov 28;149(20):204503. doi: 10.1063/1.5052003.

PMID:
30501262
28.

Structural Correlations and Percolation in Twisted Perylene Diimides Using a Simple Anisotropic Coarse-Grained Model.

Bowen AS, Jackson NE, Reid DR, de Pablo JJ.

J Chem Theory Comput. 2018 Dec 11;14(12):6495-6504. doi: 10.1021/acs.jctc.8b00742. Epub 2018 Nov 20.

PMID:
30407817
29.

Effect of temperature on the structure and dynamics of triblock polyelectrolyte gels.

Rahalkar A, Wei G, Nieuwendaal R, Prabhu VM, Srivastava S, Levi AE, de Pablo JJ, Tirrell MV.

J Chem Phys. 2018 Oct 28;149(16):163310. doi: 10.1063/1.5035083.

PMID:
30384695
30.

Tunable structure and dynamics of active liquid crystals.

Kumar N, Zhang R, de Pablo JJ, Gardel ML.

Sci Adv. 2018 Oct 12;4(10):eaat7779. doi: 10.1126/sciadv.aat7779. eCollection 2018 Oct.

31.

Benzodiazepine Use and Long-Term Mortality in Real-Life Chronic Heart Failure Outpatients: A Cohort Analysis.

Diez-Quevedo C, Lupon J, de Antonio M, Domingo M, Martin-Subero M, Rangil T, Moliner P, Zamora E, Altimir S, Santesmases J, Troya MI, Boldo M, de Pablo J, Bayes-Genis A.

Psychother Psychosom. 2018;87(6):372-374. doi: 10.1159/000491879. Epub 2018 Oct 10. No abstract available.

PMID:
30304738
32.

Amphiphile-Induced Phase Transition of Liquid Crystals at Aqueous Interfaces.

Ramezani-Dakhel H, Rahimi M, Pendery J, Kim YK, Thayumanavan S, Roux B, Abbott NL, de Pablo JJ.

ACS Appl Mater Interfaces. 2018 Oct 31;10(43):37618-37624. doi: 10.1021/acsami.8b09639. Epub 2018 Oct 22.

PMID:
30285408
33.

Defect Annihilation Pathways in Directed Assembly of Lamellar Block Copolymer Thin Films.

Hur SM, Thapar V, Ramírez-Hernández A, Nealey PF, de Pablo JJ.

ACS Nano. 2018 Oct 23;12(10):9974-9981. doi: 10.1021/acsnano.8b04202. Epub 2018 Oct 8.

PMID:
30226748
34.

Layered nested Markov chain Monte Carlo.

Jackson NE, Webb MA, de Pablo JJ.

J Chem Phys. 2018 Aug 21;149(7):072326. doi: 10.1063/1.5030531.

PMID:
30134725
35.

Oligomers as Triggers for Responsive Liquid Crystals.

Kim YK, Raghupathi KR, Pendery JS, Khomein P, Sridhar U, de Pablo JJ, Thayumanavan S, Abbott NL.

Langmuir. 2018 Aug 28;34(34):10092-10101. doi: 10.1021/acs.langmuir.8b01944. Epub 2018 Aug 20.

PMID:
30064213
36.

Aggregation and Solubility of a Model Conjugated Donor-Acceptor Polymer.

Reid DR, Jackson NE, Bourque AJ, Snyder CR, Jones RL, de Pablo JJ.

J Phys Chem Lett. 2018 Aug 16;9(16):4802-4807. doi: 10.1021/acs.jpclett.8b01738. Epub 2018 Aug 9.

37.

Early-stage human islet amyloid polypeptide aggregation: Mechanisms behind dimer formation.

Guo AZ, Fluitt AM, de Pablo JJ.

J Chem Phys. 2018 Jul 14;149(2):025101. doi: 10.1063/1.5033458.

PMID:
30007378
38.

Author Correction: Dynamic actuation of glassy polymersomes through isomerization of a single azobenzene unit at the block copolymer interface.

Molla MR, Rangadurai P, Antony L, Swaminathan S, de Pablo JJ, Thayumanavan S.

Nat Chem. 2018 Aug;10(8):895. doi: 10.1038/s41557-018-0090-z.

PMID:
29955169
39.

Multivalent counterions diminish the lubricity of polyelectrolyte brushes.

Yu J, Jackson NE, Xu X, Morgenstern Y, Kaufman Y, Ruths M, de Pablo JJ, Tirrell M.

Science. 2018 Jun 29;360(6396):1434-1438. doi: 10.1126/science.aar5877.

PMID:
29954973
40.

Evolutionary strategy for inverse charge measurements of dielectric particles.

Jiang X, Li J, Lee V, Jaeger HM, Heinonen OG, de Pablo JJ.

J Chem Phys. 2018 Jun 21;148(23):234302. doi: 10.1063/1.5027435.

PMID:
29935510
41.

Optimizing self-consistent field theory block copolymer models with X-ray metrology.

Hannon AF, Sunday DF, Bowen A, Khaira G, Ren J, Nealey PF, de Pablo JJ, Kline RJ.

Mol Syst Des Eng. 2018 Apr;3(2):376-389. doi: 10.1039/C7ME00098G.

42.

Dynamic actuation of glassy polymersomes through isomerization of a single azobenzene unit at the block copolymer interface.

Molla MR, Rangadurai P, Antony L, Swaminathan S, de Pablo JJ, Thayumanavan S.

Nat Chem. 2018 Jun;10(6):659-666. doi: 10.1038/s41557-018-0027-6. Epub 2018 Apr 30. Erratum in: Nat Chem. 2018 Aug;10(8):895.

PMID:
29713034
43.

Retention of cesium and strontium by uranophane, Ca(UO2)2(SiO3OH)2·5H2O.

Espriu-Gascon A, Giménez J, Casas I, de Pablo J.

J Hazard Mater. 2018 Jul 5;353:431-435. doi: 10.1016/j.jhazmat.2018.04.051. Epub 2018 Apr 22.

PMID:
29702458
44.

Hierarchical Coupling of First-Principles Molecular Dynamics with Advanced Sampling Methods.

Sevgen E, Giberti F, Sidky H, Whitmer JK, Galli G, Gygi F, de Pablo JJ.

J Chem Theory Comput. 2018 Jun 12;14(6):2881-2888. doi: 10.1021/acs.jctc.8b00192. Epub 2018 May 14.

PMID:
29694787
45.

Children with cerebral malaria or severe malarial anaemia lack immunity to distinct variant surface antigen subsets.

Travassos MA, Niangaly A, Bailey JA, Ouattara A, Coulibaly D, Lyke KE, Laurens MB, Pablo J, Jasinskas A, Nakajima R, Berry AA, Adams M, Jacob CG, Pike A, Takala-Harrison S, Liang L, Kouriba B, Kone AK, Rowe JA, Moulds J, Diallo DA, Doumbo OK, Thera MA, Felgner PL, Plowe CV.

Sci Rep. 2018 Apr 19;8(1):6281. doi: 10.1038/s41598-018-24462-4.

46.

Publisher Correction: Unravelling the immune signature of Plasmodium falciparum transmission-reducing immunity.

Stone WJR, Campo JJ, Ouédraogo AL, Meerstein-Kessel L, Morlais I, Da D, Cohuet A, Nsango S, Sutherland CJ, van de Vegte-Bolmer M, Siebelink-Stoter R, van Gemert GJ, Graumans W, Lanke K, Shandling AD, Pablo JV, Teng AA, Jones S, de Jong RM, Fabra-García A, Bradley J, Roeffen W, Lasonder E, Gremo G, Schwarzer E, Janse CJ, Singh SK, Theisen M, Felgner P, Marti M, Drakeley C, Sauerwein R, Bousema T, Jore MM.

Nat Commun. 2018 Apr 11;9(1):1498. doi: 10.1038/s41467-018-03769-w.

47.

Adaptive enhanced sampling by force-biasing using neural networks.

Guo AZ, Sevgen E, Sidky H, Whitmer JK, Hubbell JA, de Pablo JJ.

J Chem Phys. 2018 Apr 7;148(13):134108. doi: 10.1063/1.5020733.

PMID:
29626875
48.

Light-activated helical inversion in cholesteric liquid crystal microdroplets.

Sleczkowski P, Zhou Y, Iamsaard S, de Pablo JJ, Katsonis N, Lacaze E.

Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):4334-4339. doi: 10.1073/pnas.1720742115. Epub 2018 Apr 6.

49.

Influence of Ion Solvation on the Properties of Electrolyte Solutions.

Andreev M, de Pablo JJ, Chremos A, Douglas JF.

J Phys Chem B. 2018 Apr 12;122(14):4029-4034. doi: 10.1021/acs.jpcb.8b00518. Epub 2018 Apr 3.

PMID:
29611710
50.

In Silico Measurement of Elastic Moduli of Nematic Liquid Crystals.

Sidky H, de Pablo JJ, Whitmer JK.

Phys Rev Lett. 2018 Mar 9;120(10):107801. doi: 10.1103/PhysRevLett.120.107801.

PMID:
29570343

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