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Best matches for Pačes J[au]:

Discovery of an endogenous Deltaretrovirus in the genome of long-fingered bats (Chiroptera: Miniopteridae). Farkašová H et al. Proc Natl Acad Sci U S A. (2017)

A 130,000-year-old archaeological site in southern California, USA. Holen SR et al. Nature. (2017)

Holen et al. reply. Holen SR et al. Nature. (2018)

Search results

Items: 1 to 50 of 58

1.

LC/MS analysis and deep sequencing reveal the accurate RNA composition in the HIV-1 virion.

Šimonová A, Svojanovská B, Trylčová J, Hubálek M, Moravčík O, Zavřel M, Pávová M, Hodek J, Weber J, Cvačka J, Pačes J, Cahová H.

Sci Rep. 2019 Jun 18;9(1):8697. doi: 10.1038/s41598-019-45079-1.

2.

The legacy of sexual ancestors in phenotypic variability, gene expression and homoeolog regulation of asexual hybrids and polyploids.

Bartoš O, Röslein J, Kotusz J, Paces J, Pekárik L, Petrtýl M, Halačka K, Štefková Kašparová E, Mendel J, Boroń A, Juchno D, Leska A, Jablonska O, Benes V, Šídová M, Janko K.

Mol Biol Evol. 2019 May 11. pii: msz114. doi: 10.1093/molbev/msz114. [Epub ahead of print]

PMID:
31077330
3.

Comment on "The earliest modern humans outside Africa".

Sharp WD, Paces JB.

Science. 2018 Oct 26;362(6413). pii: eaat6598. doi: 10.1126/science.aat6598.

PMID:
30361342
4.

AmtDB: a database of ancient human mitochondrial genomes.

Ehler E, Novotný J, Juras A, Chylenski M, Moravcík O, Paces J.

Nucleic Acids Res. 2019 Jan 8;47(D1):D29-D32. doi: 10.1093/nar/gky843.

5.

Remnants of an Ancient Deltaretrovirus in the Genomes of Horseshoe Bats (Rhinolophidae).

Hron T, Farkašová H, Gifford RJ, Benda P, Hulva P, Görföl T, Pačes J, Elleder D.

Viruses. 2018 Apr 10;10(4). pii: E185. doi: 10.3390/v10040185.

6.

Holen et al. reply.

Holen SR, Deméré TA, Fisher DC, Fullagar R, Paces JB, Jefferson GT, Beeton JM, Cerutti RA, Rountrey AN, Vescera L, Holen KA.

Nature. 2018 Feb 7;554(7691):E3. doi: 10.1038/nature25166. No abstract available.

PMID:
29420475
7.

Genomic islands of differentiation in two songbird species reveal candidate genes for hybrid female sterility.

Mořkovský L, Janoušek V, Reif J, Rídl J, Pačes J, Choleva L, Janko K, Nachman MW, Reifová R.

Mol Ecol. 2018 Feb;27(4):949-958. doi: 10.1111/mec.14479. Epub 2018 Feb 26.

8.

Hybrid asexuality as a primary postzygotic barrier between nascent species: On the interconnection between asexuality, hybridization and speciation.

Janko K, Pačes J, Wilkinson-Herbots H, Costa RJ, Roslein J, Drozd P, Iakovenko N, Rídl J, Hroudová M, Kočí J, Reifová R, Šlechtová V, Choleva L.

Mol Ecol. 2018 Jan;27(1):248-263. doi: 10.1111/mec.14377. Epub 2017 Nov 29.

PMID:
28987005
9.

A 130,000-year-old archaeological site in southern California, USA.

Holen SR, Deméré TA, Fisher DC, Fullagar R, Paces JB, Jefferson GT, Beeton JM, Cerutti RA, Rountrey AN, Vescera L, Holen KA.

Nature. 2017 Apr 26;544(7651):479-483. doi: 10.1038/nature22065.

PMID:
28447646
10.

Discovery of an endogenous Deltaretrovirus in the genome of long-fingered bats (Chiroptera: Miniopteridae).

Farkašová H, Hron T, Pačes J, Hulva P, Benda P, Gifford RJ, Elleder D.

Proc Natl Acad Sci U S A. 2017 Mar 21;114(12):3145-3150. doi: 10.1073/pnas.1621224114. Epub 2017 Mar 9.

11.

Life History of the Oldest Lentivirus: Characterization of ELVgv Integrations in the Dermopteran Genome.

Hron T, Farkašová H, Padhi A, Pačes J, Elleder D.

Mol Biol Evol. 2016 Oct;33(10):2659-69. doi: 10.1093/molbev/msw149. Epub 2016 Aug 9.

PMID:
27507840
12.

Plants Rather than Mineral Fertilization Shape Microbial Community Structure and Functional Potential in Legacy Contaminated Soil.

Ridl J, Kolar M, Strejcek M, Strnad H, Stursa P, Paces J, Macek T, Uhlik O.

Front Microbiol. 2016 Jun 24;7:995. doi: 10.3389/fmicb.2016.00995. eCollection 2016.

13.

A millennial-scale record of Pb and Hg contamination in peatlands of the Sacramento-San Joaquin Delta of California, USA.

Drexler JZ, Alpers CN, Neymark LA, Paces JB, Taylor HE, Fuller CC.

Sci Total Environ. 2016 May 1;551-552:738-51. doi: 10.1016/j.scitotenv.2016.01.201. Epub 2016 Feb 23.

PMID:
26918488
14.

Corrigendum: Cubozoan genome illuminates functional diversification of opsins and photoreceptor evolution.

Liegertová M, Pergner J, Kozmiková I, Fabian P, Pombinho AR, Strnad H, Pačes J, Vlček Č, Bartůněk P, Kozmik Z.

Sci Rep. 2015 Sep 24;5:14396. doi: 10.1038/srep14396. No abstract available.

15.

Hidden genes in birds.

Hron T, Pajer P, Pačes J, Bartůněk P, Elleder D.

Genome Biol. 2015 Aug 18;16:164. doi: 10.1186/s13059-015-0724-z.

16.

Cubozoan genome illuminates functional diversification of opsins and photoreceptor evolution.

Liegertová M, Pergner J, Kozmiková I, Fabian P, Pombinho AR, Strnad H, Pačes J, Vlček Č, Bartůněk P, Kozmik Z.

Sci Rep. 2015 Jul 8;5:11885. doi: 10.1038/srep11885. Erratum in: Sci Rep. 2015;5:14396.

17.

Scrimer: designing primers from transcriptome data.

Mořkovský L, Pačes J, Rídl J, Reifová R.

Mol Ecol Resour. 2015 Nov;15(6):1415-20. doi: 10.1111/1755-0998.12403. Epub 2015 Mar 31.

PMID:
25773304
18.

Lateral gene transfer and gene duplication played a key role in the evolution of Mastigamoeba balamuthi hydrogenosomes.

Nývltová E, Stairs CW, Hrdý I, Rídl J, Mach J, Pačes J, Roger AJ, Tachezy J.

Mol Biol Evol. 2015 Apr;32(4):1039-55. doi: 10.1093/molbev/msu408. Epub 2015 Jan 7.

19.

Endogenous lentivirus in Malayan colugo (Galeopterus variegatus), a close relative of primates.

Hron T, Fábryová H, Pačes J, Elleder D.

Retrovirology. 2014 Oct 4;11:84. doi: 10.1186/s12977-014-0084-x.

20.

Distinguishing between incomplete lineage sorting and genomic introgressions: complete fixation of allospecific mitochondrial DNA in a sexually reproducing fish (Cobitis; Teleostei), despite clonal reproduction of hybrids.

Choleva L, Musilova Z, Kohoutova-Sediva A, Paces J, Rab P, Janko K.

PLoS One. 2014 Jun 27;9(6):e80641. doi: 10.1371/journal.pone.0080641. eCollection 2014.

21.

NIF-type iron-sulfur cluster assembly system is duplicated and distributed in the mitochondria and cytosol of Mastigamoeba balamuthi.

Nývltová E, Šuták R, Harant K, Šedinová M, Hrdy I, Paces J, Vlček Č, Tachezy J.

Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):7371-6. doi: 10.1073/pnas.1219590110. Epub 2013 Apr 15.

22.

New insight into transcription of human endogenous retroviral elements.

Pačes J, Huang YT, Pačes V, Rídl J, Chang CM.

N Biotechnol. 2013 Mar 25;30(3):314-8. doi: 10.1016/j.nbt.2012.11.009. Epub 2012 Nov 29. Review.

PMID:
23201072
23.

Troy, a tumor necrosis factor receptor family member, interacts with lgr5 to inhibit wnt signaling in intestinal stem cells.

Fafilek B, Krausova M, Vojtechova M, Pospichalova V, Tumova L, Sloncova E, Huranova M, Stancikova J, Hlavata A, Svec J, Sedlacek R, Luksan O, Oliverius M, Voska L, Jirsa M, Paces J, Kolar M, Krivjanska M, Klimesova K, Tlaskalova-Hogenova H, Korinek V.

Gastroenterology. 2013 Feb;144(2):381-91. doi: 10.1053/j.gastro.2012.10.048. Epub 2012 Nov 7.

PMID:
23142137
24.

Upregulation of IL-6, IL-8 and CXCL-1 production in dermal fibroblasts by normal/malignant epithelial cells in vitro: Immunohistochemical and transcriptomic analyses.

Kolář M, Szabo P, Dvořánková B, Lacina L, Gabius HJ, Strnad H, Sáchová J, Vlček C, Plzák J, Chovanec M, Cada Z, Betka J, Fík Z, Pačes J, Kovářová H, Motlík J, Jarkovská K, Smetana K Jr.

Biol Cell. 2012 Dec;104(12):738-51. doi: 10.1111/boc.201200018.

PMID:
23043537
25.

Intraspecific sequence comparisons reveal similar rates of non-collinear gene insertion in the B and D genomes of bread wheat.

Bartoš J, Vlček C, Choulet F, Džunková M, Cviková K, Safář J, Simková H, Pačes J, Strnad H, Sourdille P, Bergès H, Cattonaro F, Feuillet C, Doležel J.

BMC Plant Biol. 2012 Aug 30;12:155.

26.

Diversity, phylogeny and expression patterns of Pou and Six homeodomain transcription factors in hydrozoan jellyfish Craspedacusta sowerbyi.

Hroudova M, Vojta P, Strnad H, Krejcik Z, Ridl J, Paces J, Vlcek C, Paces V.

PLoS One. 2012;7(4):e36420. doi: 10.1371/journal.pone.0036420. Epub 2012 Apr 30.

27.

Smooth muscle actin-expressing stromal fibroblasts in head and neck squamous cell carcinoma: increased expression of galectin-1 and induction of poor prognosis factors.

Valach J, Fík Z, Strnad H, Chovanec M, Plzák J, Cada Z, Szabo P, Sáchová J, Hroudová M, Urbanová M, Steffl M, Pačes J, Mazánek J, Vlček C, Betka J, Kaltner H, André S, Gabius HJ, Kodet R, Smetana K Jr, Gál P, Kolář M.

Int J Cancer. 2012 Dec 1;131(11):2499-508. doi: 10.1002/ijc.27550. Epub 2012 Apr 9.

28.

PRR7 is a transmembrane adaptor protein expressed in activated T cells involved in regulation of T cell receptor signaling and apoptosis.

Hrdinka M, Dráber P, Stepánek O, Ormsby T, Otáhal P, Angelisová P, Brdicka T, Paces J, Horejsí V, Drbal K.

J Biol Chem. 2011 Jun 3;286(22):19617-29. doi: 10.1074/jbc.M110.175117. Epub 2011 Apr 1.

29.

Complete genome sequence of the haloaromatic acid-degrading bacterium Achromobacter xylosoxidans A8.

Strnad H, Ridl J, Paces J, Kolar M, Vlcek C, Paces V.

J Bacteriol. 2011 Feb;193(3):791-2. doi: 10.1128/JB.01299-10. Epub 2010 Nov 19.

30.

Complete genome sequence of the photosynthetic purple nonsulfur bacterium Rhodobacter capsulatus SB 1003.

Strnad H, Lapidus A, Paces J, Ulbrich P, Vlcek C, Paces V, Haselkorn R.

J Bacteriol. 2010 Jul;192(13):3545-6. doi: 10.1128/JB.00366-10. Epub 2010 Apr 23.

31.

Functional characterization of PaLAX1, a putative auxin permease, in heterologous plant systems.

Hoyerová K, Perry L, Hand P, Lanková M, Kocábek T, May S, Kottová J, Paces J, Napier R, Zazímalová E.

Plant Physiol. 2008 Mar;146(3):1128-41. doi: 10.1104/pp.107.109371. Epub 2008 Jan 9.

32.

Retroposition of processed pseudogenes: the impact of RNA stability and translational control.

Pavlicek A, Gentles AJ, Paces J, Paces V, Jurka J.

Trends Genet. 2006 Feb;22(2):69-73. Epub 2005 Dec 13. Review.

33.

The Rhodobacter capsulatus genome.

Haselkorn R, Lapidus A, Kogan Y, Vlcek C, Paces J, Paces V, Ulbrich P, Pecenkova T, Rebrekov D, Milgram A, Mazur M, Cox R, Kyrpides N, Ivanova N, Kapatral V, Los T, Lykidis A, Mikhailova N, Reznik G, Vasieva O, Fonstein M.

Photosynth Res. 2001;70(1):43-52.

PMID:
16228361
34.
35.

High copy number in human endogenous retrovirus families is associated with copying mechanisms in addition to reinfection.

Belshaw R, Katzourakis A, Paces J, Burt A, Tristem M.

Mol Biol Evol. 2005 Apr;22(4):814-7. Epub 2005 Jan 19.

PMID:
15659556
36.

WAViS server for handling, visualization and presentation of multiple alignments of nucleotide or amino acids sequences.

Zika R, Paces J, Pavlícek A, Paces V.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W48-9.

37.

Representing GC variation along eukaryotic chromosomes.

Paces J, Zíka R, Paces V, Pavlícek A, Clay O, Bernardi G.

Gene. 2004 May 26;333:135-41.

PMID:
15177688
38.

Long-term reinfection of the human genome by endogenous retroviruses.

Belshaw R, Pereira V, Katzourakis A, Talbot G, Paces J, Burt A, Tristem M.

Proc Natl Acad Sci U S A. 2004 Apr 6;101(14):4894-9. Epub 2004 Mar 25.

39.

HERVd: the Human Endogenous RetroViruses Database: update.

Paces J, Pavlícek A, Zika R, Kapitonov VV, Jurka J, Paces V.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D50.

40.

LIME: a new membrane Raft-associated adaptor protein involved in CD4 and CD8 coreceptor signaling.

Brdicková N, Brdicka T, Angelisová P, Horváth O, Spicka J, Hilgert I, Paces J, Simeoni L, Kliche S, Merten C, Schraven B, Horejsí V.

J Exp Med. 2003 Nov 17;198(10):1453-62. Epub 2003 Nov 10.

41.

DicodonUse: the programme for dicodon bias visualization in prokaryotes.

Paces J, Paces V.

Folia Biol (Praha). 2002;48(6):246-9.

PMID:
12512801
43.

Cloning and expression of PARP-3 (Adprt3) and U3-55k, two genes closely linked on mouse chromosome 9.

Urbánek P, Paces J, Králová J, Dvorák M, Paces V.

Folia Biol (Praha). 2002;48(5):182-91.

PMID:
12448766
44.

Genetic determination of polyhydroxyalkanoate metabolism in Rhodobacter capsulatus SB1003.

Ulbrich P, Strnad H, Hejkalová V, Paces J, Paces V.

Folia Biol (Praha). 2002;48(4):157-9.

PMID:
12194204
45.
46.
47.

Isochore conservation between MHC regions on human chromosome 6 and mouse chromosome 17.

Pavlícek A, Clay O, Jabbari K, Paces J, Bernardi G.

FEBS Lett. 2002 Jan 30;511(1-3):175-7. No abstract available.

48.

A compact view of isochores in the draft human genome sequence.

Pavlícek A, Paces J, Clay O, Bernardi G.

FEBS Lett. 2002 Jan 30;511(1-3):165-9.

49.

HERVd: database of human endogenous retroviruses.

Paces J, Pavlícek A, Paces V.

Nucleic Acids Res. 2002 Jan 1;30(1):205-6.

50.

Genes, isochores and bands in human chromosomes 21 and 22.

Saccone S, Pavlicek A, Federico C, Paces J, Bernard G.

Chromosome Res. 2001;9(7):533-9.

PMID:
11721952

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