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Items: 1 to 50 of 81

1.

Major QTLs for Resistance to Early and Late Leaf Spot Diseases Are Identified on Chromosomes 3 and 5 in Peanut (Arachis hypogaea).

Chu Y, Chee P, Culbreath A, Isleib TG, Holbrook CC, Ozias-Akins P.

Front Plant Sci. 2019 Jul 5;10:883. doi: 10.3389/fpls.2019.00883. eCollection 2019.

2.

Evaluation of linkage disequilibrium, population structure, and genetic diversity in the U.S. peanut mini core collection.

Otyama PI, Wilkey A, Kulkarni R, Assefa T, Chu Y, Clevenger J, O'Connor DJ, Wright GC, Dezern SW, MacDonald GE, Anglin NL, Cannon EKS, Ozias-Akins P, Cannon SB.

BMC Genomics. 2019 Jun 11;20(1):481. doi: 10.1186/s12864-019-5824-9.

3.

The genome sequence of segmental allotetraploid peanut Arachis hypogaea.

Bertioli DJ, Jenkins J, Clevenger J, Dudchenko O, Gao D, Seijo G, Leal-Bertioli SCM, Ren L, Farmer AD, Pandey MK, Samoluk SS, Abernathy B, Agarwal G, Ballén-Taborda C, Cameron C, Campbell J, Chavarro C, Chitikineni A, Chu Y, Dash S, El Baidouri M, Guo B, Huang W, Kim KD, Korani W, Lanciano S, Lui CG, Mirouze M, Moretzsohn MC, Pham M, Shin JH, Shirasawa K, Sinharoy S, Sreedasyam A, Weeks NT, Zhang X, Zheng Z, Sun Z, Froenicke L, Aiden EL, Michelmore R, Varshney RK, Holbrook CC, Cannon EKS, Scheffler BE, Grimwood J, Ozias-Akins P, Cannon SB, Jackson SA, Schmutz J.

Nat Genet. 2019 May;51(5):877-884. doi: 10.1038/s41588-019-0405-z. Epub 2019 May 1.

PMID:
31043755
4.

Machine Learning as an Effective Method for Identifying True Single Nucleotide Polymorphisms in Polyploid Plants.

Korani W, Clevenger JP, Chu Y, Ozias-Akins P.

Plant Genome. 2019 Mar;12(1). doi: 10.3835/plantgenome2018.05.0023.

5.

Identifying and Engineering Genes for Parthenogenesis in Plants.

Vijverberg K, Ozias-Akins P, Schranz ME.

Front Plant Sci. 2019 Feb 19;10:128. doi: 10.3389/fpls.2019.00128. eCollection 2019. Review.

6.

The functional biology of peanut allergens and possible links to their allergenicity.

Ozias-Akins P, Breiteneder H.

Allergy. 2019 May;74(5):888-898. doi: 10.1111/all.13719. Epub 2019 Feb 1. Review.

7.

Genetic insight and mapping of the pod constriction trait in Virginia-type peanut.

Patil AS, Popovsky S, Levy Y, Chu Y, Clevenger J, Ozias-Akins P, Hovav R.

BMC Genet. 2018 Oct 19;19(1):93. doi: 10.1186/s12863-018-0674-z.

8.

Influence of Temperature on Susceptibility of CVS. Tifguard and Georgia-06G Peanut to Meloidogyne arenaria.

Yuan W, Holbrook CC, Chu Y, Ozias-Akins P, Dickson DW.

J Nematol. 2018 May 31;50(1):33-40. doi: 10.21307/jofnem-2018-006.

PMID:
30335910
9.

Haplotype-Based Genotyping in Polyploids.

Clevenger JP, Korani W, Ozias-Akins P, Jackson S.

Front Plant Sci. 2018 Apr 26;9:564. doi: 10.3389/fpls.2018.00564. eCollection 2018.

10.

High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut.

Agarwal G, Clevenger J, Pandey MK, Wang H, Shasidhar Y, Chu Y, Fountain JC, Choudhary D, Culbreath AK, Liu X, Huang G, Wang X, Deshmukh R, Holbrook CC, Bertioli DJ, Ozias-Akins P, Jackson SA, Varshney RK, Guo B.

Plant Biotechnol J. 2018 Nov;16(11):1954-1967. doi: 10.1111/pbi.12930. Epub 2018 May 15.

11.

Insight into Genes Regulating Postharvest Aflatoxin Contamination of Tetraploid Peanut from Transcriptional Profiling.

Korani W, Chu Y, Holbrook CC, Ozias-Akins P.

Genetics. 2018 May;209(1):143-156. doi: 10.1534/genetics.118.300478. Epub 2018 Mar 15.

12.

Mapping Late Leaf Spot Resistance in Peanut (Arachis hypogaea) Using QTL-seq Reveals Markers for Marker-Assisted Selection.

Clevenger J, Chu Y, Chavarro C, Botton S, Culbreath A, Isleib TG, Holbrook CC, Ozias-Akins P.

Front Plant Sci. 2018 Feb 5;9:83. doi: 10.3389/fpls.2018.00083. eCollection 2018.

13.

Horizontal Transfer of Non-LTR Retrotransposons from Arthropods to Flowering Plants.

Gao D, Chu Y, Xia H, Xu C, Heyduk K, Abernathy B, Ozias-Akins P, Leebens-Mack JH, Jackson SA.

Mol Biol Evol. 2018 Feb 1;35(2):354-364. doi: 10.1093/molbev/msx275.

14.

Apomixis: Engineering the Ability to Harness Hybrid Vigor in Crop Plants.

Conner JA, Ozias-Akins P.

Methods Mol Biol. 2017;1669:17-34. doi: 10.1007/978-1-4939-7286-9_2. Review.

PMID:
28936646
15.

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.

Varshney RK, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava RK, Chitikineni A, Fan G, Bajaj P, Punnuri S, Gupta SK, Wang H, Jiang Y, Couderc M, Katta MAVSK, Paudel DR, Mungra KD, Chen W, Harris-Shultz KR, Garg V, Desai N, Doddamani D, Kane NA, Conner JA, Ghatak A, Chaturvedi P, Subramaniam S, Yadav OP, Berthouly-Salazar C, Hamidou F, Wang J, Liang X, Clotault J, Upadhyaya HD, Cubry P, Rhoné B, Gueye MC, Sunkar R, Dupuy C, Sparvoli F, Cheng S, Mahala RS, Singh B, Yadav RS, Lyons E, Datta SK, Hash CT, Devos KM, Buckler E, Bennetzen JL, Paterson AH, Ozias-Akins P, Grando S, Wang J, Mohapatra T, Weckwerth W, Reif JC, Liu X, Vigouroux Y, Xu X.

Nat Biotechnol. 2017 Oct;35(10):969-976. doi: 10.1038/nbt.3943. Epub 2017 Sep 18.

16.

Genotypic Regulation of Aflatoxin Accumulation but Not Aspergillus Fungal Growth upon Post-Harvest Infection of Peanut (Arachis hypogaea L.) Seeds.

Korani WA, Chu Y, Holbrook C, Clevenger J, Ozias-Akins P.

Toxins (Basel). 2017 Jul 12;9(7). pii: E218. doi: 10.3390/toxins9070218.

17.

Gene expression profiling describes the genetic regulation of Meloidogyne arenaria resistance in Arachis hypogaea and reveals a candidate gene for resistance.

Clevenger J, Chu Y, Arrais Guimaraes L, Maia T, Bertioli D, Leal-Bertioli S, Timper P, Holbrook CC, Ozias-Akins P.

Sci Rep. 2017 May 2;7(1):1317. doi: 10.1038/s41598-017-00971-6.

18.

Haploid embryo production in rice and maize induced by PsASGR-BBML transgenes.

Conner JA, Podio M, Ozias-Akins P.

Plant Reprod. 2017 Mar;30(1):41-52. doi: 10.1007/s00497-017-0298-x. Epub 2017 Feb 25.

PMID:
28238020
19.

Development and Evaluation of a High Density Genotyping 'Axiom_Arachis' Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut.

Pandey MK, Agarwal G, Kale SM, Clevenger J, Nayak SN, Sriswathi M, Chitikineni A, Chavarro C, Chen X, Upadhyaya HD, Vishwakarma MK, Leal-Bertioli S, Liang X, Bertioli DJ, Guo B, Jackson SA, Ozias-Akins P, Varshney RK.

Sci Rep. 2017 Jan 16;7:40577. doi: 10.1038/srep40577.

20.

Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut.

Clevenger J, Chu Y, Chavarro C, Agarwal G, Bertioli DJ, Leal-Bertioli SCM, Pandey MK, Vaughn J, Abernathy B, Barkley NA, Hovav R, Burow M, Nayak SN, Chitikineni A, Isleib TG, Holbrook CC, Jackson SA, Varshney RK, Ozias-Akins P.

Mol Plant. 2017 Feb 13;10(2):309-322. doi: 10.1016/j.molp.2016.11.015. Epub 2016 Dec 18.

21.

RNA Sequencing of Contaminated Seeds Reveals the State of the Seed Permissive for Pre-Harvest Aflatoxin Contamination and Points to a Potential Susceptibility Factor.

Clevenger J, Marasigan K, Liakos V, Sobolev V, Vellidis G, Holbrook C, Ozias-Akins P.

Toxins (Basel). 2016 Nov 3;8(11). pii: E317.

22.

A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea.

Clevenger J, Chu Y, Scheffler B, Ozias-Akins P.

Front Plant Sci. 2016 Sep 30;7:1446. eCollection 2016.

23.

Gene expression profiling during seed-filling process in peanut with emphasis on oil biosynthesis networks.

Gupta K, Kayam G, Faigenboim-Doron A, Clevenger J, Ozias-Akins P, Hovav R.

Plant Sci. 2016 Jul;248:116-27. doi: 10.1016/j.plantsci.2016.04.014. Epub 2016 Apr 28.

PMID:
27181953
24.

In Silico and Fluorescence In Situ Hybridization Mapping Reveals Collinearity between the Pennisetum squamulatum Apomixis Carrier-Chromosome and Chromosome 2 of Sorghum and Foxtail Millet.

Sapkota S, Conner JA, Hanna WW, Simon B, Fengler K, Deschamps S, Cigan M, Ozias-Akins P.

PLoS One. 2016 Mar 31;11(3):e0152411. doi: 10.1371/journal.pone.0152411. eCollection 2016.

25.

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut.

Bertioli DJ, Cannon SB, Froenicke L, Huang G, Farmer AD, Cannon EK, Liu X, Gao D, Clevenger J, Dash S, Ren L, Moretzsohn MC, Shirasawa K, Huang W, Vidigal B, Abernathy B, Chu Y, Niederhuth CE, Umale P, Araújo AC, Kozik A, Kim KD, Burow MD, Varshney RK, Wang X, Zhang X, Barkley N, Guimarães PM, Isobe S, Guo B, Liao B, Stalker HT, Schmitz RJ, Scheffler BE, Leal-Bertioli SC, Xun X, Jackson SA, Michelmore R, Ozias-Akins P.

Nat Genet. 2016 Apr;48(4):438-46. doi: 10.1038/ng.3517. Epub 2016 Feb 22.

PMID:
26901068
26.

A parthenogenesis gene of apomict origin elicits embryo formation from unfertilized eggs in a sexual plant.

Conner JA, Mookkan M, Huo H, Chae K, Ozias-Akins P.

Proc Natl Acad Sci U S A. 2015 Sep 8;112(36):11205-10. doi: 10.1073/pnas.1505856112. Epub 2015 Aug 24.

27.

SWEEP: A Tool for Filtering High-Quality SNPs in Polyploid Crops.

Clevenger JP, Ozias-Akins P.

G3 (Bethesda). 2015 Jul 6;5(9):1797-803. doi: 10.1534/g3.115.019703.

28.

TILLING by sequencing to identify induced mutations in stress resistance genes of peanut (Arachis hypogaea).

Guo Y, Abernathy B, Zeng Y, Ozias-Akins P.

BMC Genomics. 2015 Mar 7;16:157. doi: 10.1186/s12864-015-1348-0.

29.

Tetrasomic recombination is surprisingly frequent in allotetraploid Arachis.

Leal-Bertioli S, Shirasawa K, Abernathy B, Moretzsohn M, Chavarro C, Clevenger J, Ozias-Akins P, Jackson S, Bertioli D.

Genetics. 2015 Apr;199(4):1093-105. doi: 10.1534/genetics.115.174607. Epub 2015 Feb 20.

30.

Single Nucleotide Polymorphism Identification in Polyploids: A Review, Example, and Recommendations.

Clevenger J, Chavarro C, Pearl SA, Ozias-Akins P, Jackson SA.

Mol Plant. 2015 Jun;8(6):831-46. doi: 10.1016/j.molp.2015.02.002. Epub 2015 Feb 10. Review.

31.

Stability of transgene expression in reduced allergen peanut (Arachis hypogaea L.) across multiple generations and at different soil sulfur levels.

Chandran M, Chu Y, Maleki SJ, Ozias-Akins P.

J Agric Food Chem. 2015 Feb 18;63(6):1788-97. doi: 10.1021/jf504892f. Epub 2015 Feb 9.

PMID:
25616282
32.

A Technique to Study Meloidogyne arenaria Resistance in Agrobacterium rhizogenes-Transformed Peanut.

Chu Y, Guimarães LA, Wu CL, Timper P, Holbrook CC, Ozias-Akins P.

Plant Dis. 2014 Oct;98(10):1292-1299. doi: 10.1094/PDIS-12-13-1241-RE.

PMID:
30703931
33.

The use of SNP markers for linkage mapping in diploid and tetraploid peanuts.

Bertioli DJ, Ozias-Akins P, Chu Y, Dantas KM, Santos SP, Gouvea E, Guimarães PM, Leal-Bertioli SC, Knapp SJ, Moretzsohn MC.

G3 (Bethesda). 2014 Jan 10;4(1):89-96. doi: 10.1534/g3.113.007617.

34.

Selection and validation of reference genes for gene expression analysis in apomictic and sexual Cenchrus ciliaris.

Simon B, Conner JA, Ozias-Akins P.

BMC Res Notes. 2013 Oct 2;6:397. doi: 10.1186/1756-0500-6-397.

35.

Recombination within the apospory specific genomic region leads to the uncoupling of apomixis components in Cenchrus ciliaris.

Conner JA, Gunawan G, Ozias-Akins P.

Planta. 2013 Jul;238(1):51-63. doi: 10.1007/s00425-013-1873-5. Epub 2013 Apr 5.

PMID:
23553451
36.

Comparative mapping in intraspecific populations uncovers a high degree of macrosynteny between A- and B-genome diploid species of peanut.

Guo Y, Khanal S, Tang S, Bowers JE, Heesacker AF, Khalilian N, Nagy ED, Zhang D, Taylor CA, Stalker HT, Ozias-Akins P, Knapp SJ.

BMC Genomics. 2012 Nov 10;13:608. doi: 10.1186/1471-2164-13-608.

37.

Deep sequencing analysis of the transcriptomes of peanut aerial and subterranean young pods identifies candidate genes related to early embryo abortion.

Chen X, Zhu W, Azam S, Li H, Zhu F, Li H, Hong Y, Liu H, Zhang E, Wu H, Yu S, Zhou G, Li S, Zhong N, Wen S, Li X, Knapp SJ, Ozias-Akins P, Varshney RK, Liang X.

Plant Biotechnol J. 2013 Jan;11(1):115-27. doi: 10.1111/pbi.12018. Epub 2012 Nov 6.

38.

A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut.

Nagy ED, Guo Y, Tang S, Bowers JE, Okashah RA, Taylor CA, Zhang D, Khanal S, Heesacker AF, Khalilian N, Farmer AD, Carrasquilla-Garcia N, Penmetsa RV, Cook D, Stalker HT, Nielsen N, Ozias-Akins P, Knapp SJ.

BMC Genomics. 2012 Sep 11;13:469. doi: 10.1186/1471-2164-13-469.

39.

Confirmation of hybridity using GISH and determination of 18S rDNA copy number using FISH in interspecific F(1) hybrids of Tecoma (Bignoniaceae).

Contreras RN, Ruter JM, Conner J, Zeng Y, Ozias-Akins P.

Genome. 2012 Jun;55(6):437-45. doi: 10.1139/g2012-030. Epub 2012 Jun 4.

PMID:
22663256
40.

Advances in Arachis genomics for peanut improvement.

Pandey MK, Monyo E, Ozias-Akins P, Liang X, Guimarães P, Nigam SN, Upadhyaya HD, Janila P, Zhang X, Guo B, Cook DR, Bertioli DJ, Michelmore R, Varshney RK.

Biotechnol Adv. 2012 May-Jun;30(3):639-51. doi: 10.1016/j.biotechadv.2011.11.001. Epub 2011 Nov 9. Review.

PMID:
22094114
41.

An integrated genetic linkage map of cultivated peanut (Arachis hypogaea L.) constructed from two RIL populations.

Qin H, Feng S, Chen C, Guo Y, Knapp S, Culbreath A, He G, Wang ML, Zhang X, Holbrook CC, Ozias-Akins P, Guo B.

Theor Appl Genet. 2012 Mar;124(4):653-64. doi: 10.1007/s00122-011-1737-y. Epub 2011 Nov 10.

PMID:
22072100
42.

Evolution of the apomixis transmitting chromosome in Pennisetum.

Akiyama Y, Goel S, Conner JA, Hanna WW, Yamada-Akiyama H, Ozias-Akins P.

BMC Evol Biol. 2011 Oct 5;11:289. doi: 10.1186/1471-2148-11-289.

43.

TILLING for allergen reduction and improvement of quality traits in peanut (Arachis hypogaea L.).

Knoll JE, Ramos ML, Zeng Y, Holbrook CC, Chow M, Chen S, Maleki S, Bhattacharya A, Ozias-Akins P.

BMC Plant Biol. 2011 May 12;11:81. doi: 10.1186/1471-2229-11-81.

44.

Identification of ovule transcripts from the Apospory-Specific Genomic Region (ASGR)-carrier chromosome.

Zeng Y, Conner J, Ozias-Akins P.

BMC Genomics. 2011 Apr 26;12:206. doi: 10.1186/1471-2164-12-206.

45.

Genetic mapping of the apospory-specific genomic region in Pennisetum squamulatum using retrotransposon-based molecular markers.

Huo H, Conner JA, Ozias-Akins P.

Theor Appl Genet. 2009 Jul;119(2):199-212. doi: 10.1007/s00122-009-1029-y. Epub 2009 Apr 16.

PMID:
19370319
46.

Validation of gel-free, label-free quantitative proteomics approaches: applications for seed allergen profiling.

Stevenson SE, Chu Y, Ozias-Akins P, Thelen JJ.

J Proteomics. 2009 Apr 13;72(3):555-66. doi: 10.1016/j.jprot.2008.11.005. Epub 2008 Nov 18.

PMID:
19049836
47.

Spontaneous and induced variability of allergens in commodity crops: Ara h 2 in peanut as a case study.

Ozias-Akins P, Ramos ML, Faustinelli P, Chu Y, Maleki S, Thelen JJ, Huntley J, Arias K, Jordana M.

Regul Toxicol Pharmacol. 2009 Aug;54(3 Suppl):S37-40. doi: 10.1016/j.yrtph.2008.11.002. Epub 2008 Nov 20.

PMID:
19047008
48.

Identification and characterization of a hypoallergenic ortholog of Ara h 2.01.

Ramos ML, Huntley JJ, Maleki SJ, Ozias-Akins P.

Plant Mol Biol. 2009 Feb;69(3):325-35. doi: 10.1007/s11103-008-9428-z. Epub 2008 Nov 14.

PMID:
19009240
49.

Reduction of IgE binding and nonpromotion of Aspergillus flavus fungal growth by simultaneously silencing Ara h 2 and Ara h 6 in peanut.

Chu Y, Faustinelli P, Ramos ML, Hajduch M, Stevenson S, Thelen JJ, Maleki SJ, Cheng H, Ozias-Akins P.

J Agric Food Chem. 2008 Dec 10;56(23):11225-33. doi: 10.1021/jf802600r.

PMID:
19007236
50.

Sequence analysis of bacterial artificial chromosome clones from the apospory-specific genomic region of Pennisetum and Cenchrus.

Conner JA, Goel S, Gunawan G, Cordonnier-Pratt MM, Johnson VE, Liang C, Wang H, Pratt LH, Mullet JE, DeBarry J, Yang L, Bennetzen JL, Klein PE, Ozias-Akins P.

Plant Physiol. 2008 Jul;147(3):1396-411. doi: 10.1104/pp.108.119081. Epub 2008 May 28.

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