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Items: 1 to 50 of 84

1.

A comparative genomics approach identifies contact-dependent growth inhibition as a virulence determinant.

Allen JP, Ozer EA, Minasov G, Shuvalova L, Kiryukhina O, Satchell KJF, Hauser AR.

Proc Natl Acad Sci U S A. 2020 Mar 24;117(12):6811-6821. doi: 10.1073/pnas.1919198117. Epub 2020 Mar 10.

PMID:
32156726
2.

Complete Genome Sequence of Klebsiella pneumoniae Strain TK421, a Conjugative Hypervirulent Isolate.

Kochan TJ, Ozer EA, Pincus NB, Fitzpatrick MA, Hauser AR.

Microbiol Resour Announc. 2020 Jan 16;9(3). pii: e01408-19. doi: 10.1128/MRA.01408-19.

3.

Long-term Persistence of an Extensively Drug Resistant Subclade of Globally Distributed Pseudomonas aeruginosa Clonal Complex 446 in an Academic Medical Center.

Pincus NB, Bachta KER, Ozer EA, Allen JP, Pura ON, Qi C, Rhodes NJ, Marty FM, Pandit A, Mekalanos JJ, Oliver A, Hauser AR.

Clin Infect Dis. 2019 Oct 4. pii: ciz973. doi: 10.1093/cid/ciz973. [Epub ahead of print]

PMID:
31583403
4.

PacBio Amplicon Sequencing Method To Measure Pilin Antigenic Variation Frequencies of Neisseria gonorrhoeae.

Ozer EA, Prister LL, Yin S, Ward BH, Ivanov S, Seifert HS.

mSphere. 2019 Oct 2;4(5). pii: e00562-19. doi: 10.1128/mSphere.00562-19.

5.

Transcriptional initiation of a small RNA, not R-loop stability, dictates the frequency of pilin antigenic variation in Neisseria gonorrhoeae.

Prister LL, Ozer EA, Cahoon LA, Seifert HS.

Mol Microbiol. 2019 Oct;112(4):1219-1234. doi: 10.1111/mmi.14356. Epub 2019 Aug 8.

PMID:
31338863
6.

Draft Genome Sequence of Pseudomonas aeruginosa Strain BWH047, a Sequence Type 235 Multidrug-Resistant Clinical Isolate Expressing High Levels of Colistin Resistance.

Bachta KER, Ozer EA, Pandit A, Marty FM, Mekalanos JJ, Hauser AR.

Microbiol Resour Announc. 2019 Jul 18;8(29). pii: e00623-19. doi: 10.1128/MRA.00623-19.

7.

Clostridioides difficile Whole-Genome Sequencing Reveals Limited Within-Host Genetic Diversity in a Pediatric Cohort.

Balaji A, Ozer EA, Kociolek LK.

J Clin Microbiol. 2019 Aug 26;57(9). pii: e00559-19. doi: 10.1128/JCM.00559-19. Print 2019 Sep.

8.

Natural Clostridioides difficile toxin immunization in colonized infants.

Kociolek LK, Espinosa RO, Gerding DN, Hauser AR, Ozer EA, Budz M, Balaji A, Chen X, Tanz RR, Yalcinkaya N, Conner ME, Savidge T, Kelly CP.

Clin Infect Dis. 2019 Jun 29. pii: ciz582. doi: 10.1093/cid/ciz582. [Epub ahead of print]

PMID:
31253983
9.

The Population Structure of Pseudomonas aeruginosa Is Characterized by Genetic Isolation of exoU+ and exoS+ Lineages.

Ozer EA, Nnah E, Didelot X, Whitaker RJ, Hauser AR.

Genome Biol Evol. 2019 Jul 1;11(1):1780-1796. doi: 10.1093/gbe/evz119.

10.

New wand coblation turbinator vs coblation radiofrequency.

Islamoglu Y, Kesici GG, Bulut KS, Ozer EA, Canan Teleke Y, Babademez MA.

Am J Otolaryngol. 2019 Sep - Oct;40(5):650-652. doi: 10.1016/j.amjoto.2019.05.019. Epub 2019 May 21.

PMID:
31130268
11.

In Vivo Proteome of Pseudomonas aeruginosa in Airways of Cystic Fibrosis Patients.

Wu X, Siehnel RJ, Garudathri J, Staudinger BJ, Hisert KB, Ozer EA, Hauser AR, Eng JK, Manoil C, Singh PK, Bruce JE.

J Proteome Res. 2019 Jun 7;18(6):2601-2612. doi: 10.1021/acs.jproteome.9b00122. Epub 2019 May 22.

12.

A Genomic Approach To Identify Klebsiella pneumoniae and Acinetobacter baumannii Strains with Enhanced Competitive Fitness in the Lungs during Multistrain Pneumonia.

Agard MJ, Ozer EA, Morris AR, Piseaux R, Hauser AR.

Infect Immun. 2019 May 21;87(6). pii: e00871-18. doi: 10.1128/IAI.00871-18. Print 2019 Jun.

13.

Kyphectomy in neonates with meningomyelocele.

Özdemir N, Özdemir SA, Özer EA.

Childs Nerv Syst. 2019 Apr;35(4):673-681. doi: 10.1007/s00381-018-4006-4. Epub 2018 Dec 11.

PMID:
30539295
14.

Efficacy and Safety of Intravenous Colistin in Very Low Birth Weight Preterm Infants.

Ilhan O, Bor M, Ozdemir SA, Akbay S, Ozer EA.

Paediatr Drugs. 2018 Oct;20(5):475-481. doi: 10.1007/s40272-018-0301-5.

PMID:
30073562
15.

Case Report of an Extensively Drug-Resistant Klebsiella pneumoniae Infection With Genomic Characterization of the Strain and Review of Similar Cases in the United States.

Krapp F, Ozer EA, Qi C, Hauser AR.

Open Forum Infect Dis. 2018 Apr 6;5(5):ofy074. doi: 10.1093/ofid/ofy074. eCollection 2018 May.

16.

Environmental reservoirs for exoS+ and exoU+ strains of Pseudomonas aeruginosa.

Rutherford V, Yom K, Ozer EA, Pura O, Hughes A, Murphy KR, Cudzilo L, Mitchell D, Hauser AR.

Environ Microbiol Rep. 2018 Aug;10(4):485-492. doi: 10.1111/1758-2229.12653.

17.

ClustAGE: a tool for clustering and distribution analysis of bacterial accessory genomic elements.

Ozer EA.

BMC Bioinformatics. 2018 Apr 20;19(1):150. doi: 10.1186/s12859-018-2154-x.

18.

Diagnostic value of urine soluble triggering receptor expressed on myeloid cells (sTREM-1) for late-onset neonatal sepsis in infected preterm neonates.

Alkan Ozdemir S, Ozer EA, Ilhan O, Sutcuoglu S, Tatlı M.

J Int Med Res. 2018 Apr;46(4):1606-1616. doi: 10.1177/0300060517749131. Epub 2018 Feb 26.

19.

Comparative genomics analysis of Clostridium difficile epidemic strain DH/NAP11/106.

Kociolek LK, Gerding DN, Hecht DW, Ozer EA.

Microbes Infect. 2018 Apr;20(4):245-253. doi: 10.1016/j.micinf.2018.01.004. Epub 2018 Jan 31.

20.

Clostridium difficile Whole Genome Sequencing Reveals Limited Transmission Among Symptomatic Children: A Single-Center Analysis.

Kociolek LK, Gerding DN, Espinosa RO, Patel SJ, Shulman ST, Ozer EA.

Clin Infect Dis. 2018 Jul 2;67(2):229-234. doi: 10.1093/cid/ciy060.

21.

Whole-genome analysis reveals the evolution and transmission of an MDR DH/NAP11/106 Clostridium difficile clone in a paediatric hospital.

Kociolek LK, Ozer EA, Gerding DN, Hecht DW, Patel SJ, Hauser AR.

J Antimicrob Chemother. 2018 May 1;73(5):1222-1229. doi: 10.1093/jac/dkx523.

22.

Solitary median maxillary central incisor, holoprosencephaly and congenital nasal pyriform aperture stenosis in a premature infant: case report.

Ilhan O, Pekcevik Y, Akbay S, Ozdemir SA, Memur S, Kanar B, Kirbiyik O, Ozer EA.

Arch Argent Pediatr. 2018 Feb 1;116(1):e130-e134. doi: 10.5546/aap.2018.eng.e130. English, Spanish.

23.

Virulence Characteristics of Carbapenem-Resistant Klebsiella pneumoniae Strains from Patients with Necrotizing Skin and Soft Tissue Infections.

Krapp F, Morris AR, Ozer EA, Hauser AR.

Sci Rep. 2017 Oct 19;7(1):13533. doi: 10.1038/s41598-017-13524-8.

24.

Complete Genome Sequence of Clostridioides difficile Epidemic Strain DH/NAP11/106/ST-42, Isolated from Stool from a Pediatric Patient with Diarrhea.

Ozer EA, Hauser AR, Gerding DN, Espinosa RO, Hecht DW, Kociolek LK.

Genome Announc. 2017 Sep 21;5(38). pii: e00923-17. doi: 10.1128/genomeA.00923-17.

25.

Treating complicated carbapenem-resistant enterobacteriaceae infections with ceftazidime/avibactam: a retrospective study with molecular strain characterisation.

Krapp F, Grant JL, Sutton SH, Ozer EA, Barr VO.

Int J Antimicrob Agents. 2017 Jun;49(6):770-773. doi: 10.1016/j.ijantimicag.2017.01.018. Epub 2017 Apr 4.

PMID:
28389354
26.

Management of the giant occipital encephaloceles in the neonates.

Ozdemir N, Ozdemir SA, Ozer EA.

Early Hum Dev. 2016 Dec;103:229-234. doi: 10.1016/j.earlhumdev.2016.10.006. Epub 2016 Nov 10. No abstract available.

PMID:
27838548
28.

Draft Genome Sequence of a Multidrug-Resistant Klebsiella quasipneumoniae subsp. similipneumoniae Isolate from a Clinical Source.

Ozer EA, Morris AR, Krapp F, Henry CS, Tyo KE, Lathem WW, Hauser AR.

Genome Announc. 2016 May 26;4(3). pii: e00422-16. doi: 10.1128/genomeA.00422-16.

29.

Congenital cutis marmorata telangiectatica and syndactyly in a preterm: case report.

Ilhan O, Ozer EA, Ozdemir SA, Akbay S, Memur S, Kanar B, Akar M, Sutcuoglu S, Tatli MM.

Arch Argent Pediatr. 2016 Apr;114(2):e111-3. doi: 10.5546/aap.2016.eng.e111. Epub 2016 Apr 1. English, Spanish.

30.

Arthrogryposis-renal tubular dysfunction-cholestasis syndrome: a cause of neonatal cholestasis. Case report.

Ilhan O, Ozer EA, Ozdemir SA, Akbay S, Memur S, Kanar B, Tatli MM.

Arch Argent Pediatr. 2016 Feb;114(1):e9-12. doi: 10.5546/aap.2016.eng.e9. English, Spanish.

31.

Utility of Whole-Genome Sequencing in Characterizing Acinetobacter Epidemiology and Analyzing Hospital Outbreaks.

Fitzpatrick MA, Ozer EA, Hauser AR.

J Clin Microbiol. 2016 Mar;54(3):593-612. doi: 10.1128/JCM.01818-15. Epub 2015 Dec 23.

32.

Papaverine intoxication in a newborn: an unusual case report.

Kahramaner Z, Erdemir A, Türkoğlu E, Coşar H, Sütçüoğlu S, Özer EA.

Turk J Pediatr. 2014 Sep-Oct;56(5):532-4.

PMID:
26022590
33.

Reference values of serum IgG and IgM levels in preterm and term newborns.

Alkan Ozdemir S, Ozer EA, Kose S, Ilhan O, Ozturk C, Sutcuoglu S.

J Matern Fetal Neonatal Med. 2016 Mar;29(6):972-6. doi: 10.3109/14767058.2015.1027680. Epub 2015 Sep 25.

PMID:
25845271
34.

Comparison of neonatal transport scoring systems and transport-related mortality score for predicting neonatal mortality risk.

Sutcuoglu S, Celik T, Alkan S, Ilhan O, Ozer EA.

Pediatr Emerg Care. 2015 Feb;31(2):113-6. doi: 10.1097/PEC.0000000000000350.

PMID:
25654677
35.

Congenital Complete Tracheal Ring in a Neonate: A Case Report.

Özer EA, Cumurcu S, Bayol Ü, Özdemir SA, Ilhan Ö, Sütçüoğlu S.

Turk Patoloji Derg. 2017;33(3):259-261. doi: 10.5146/tjpath.2014.01292.

36.

Draft Genome Sequence of Acinetobacter baumannii Strain ABBL099, a Multidrug-Resistant Clinical Outbreak Isolate with a Novel Multilocus Sequence Type.

Ozer EA, Fitzpatrick MA, Hauser AR.

Genome Announc. 2014 Sep 11;2(5). pii: e00738-14. doi: 10.1128/genomeA.00738-14.

37.

Is radiological appearance of lower respiratory tract infection due to respiratory syncytial virus a predictor of clinical outcome?

Alkan Ozdemir S, Ozer EA, Pekcevik Y, Ilhan O, Sutcuoglu S.

J Matern Fetal Neonatal Med. 2015;28(14):1660-3. doi: 10.3109/14767058.2014.963548. Epub 2014 Sep 30.

PMID:
25211292
38.

Characterization of the core and accessory genomes of Pseudomonas aeruginosa using bioinformatic tools Spine and AGEnt.

Ozer EA, Allen JP, Hauser AR.

BMC Genomics. 2014 Aug 29;15:737. doi: 10.1186/1471-2164-15-737.

39.

Genome-wide identification of Acinetobacter baumannii genes necessary for persistence in the lung.

Wang N, Ozer EA, Mandel MJ, Hauser AR.

mBio. 2014 Jun 3;5(3):e01163-14. doi: 10.1128/mBio.01163-14.

40.

Is pneumothorax size on chest x-ray a predictor of neonatal mortality?

Ozer EA, Ergin AY, Sutcuoglu S, Ozturk C, Yurtseven A.

Iran J Pediatr. 2013 Oct;23(5):541-5.

41.

Surfactant treatment for neonatal respiratory disorders other than respiratory distress syndrome.

Alkan S, Ozer EA, Ilhan O, Sutcuoglu S, Tatli M.

J Matern Fetal Neonatal Med. 2015 Jan;28(2):131-3. doi: 10.3109/14767058.2014.906575. Epub 2014 Apr 9.

PMID:
24716748
42.

Case of acquired lobar emphysema mimicking pneumothorax in a neonate.

Firinci F, Duman N, Ates O, Ozer EA, Kumral A, Erdemir A, Ozkan H.

East Mediterr Health J. 2013 Nov;19(11):960-1. No abstract available.

43.

Different paths to pathogenesis.

Allen JP, Ozer EA, Hauser AR.

Trends Microbiol. 2014 Apr;22(4):168-9. doi: 10.1016/j.tim.2014.02.013. Epub 2014 Mar 12.

44.

Effects of synchronized intermittent mandatory ventilation versus pressure support plus volume guarantee ventilation in the weaning phase of preterm infants*.

Erdemir A, Kahramaner Z, Turkoglu E, Cosar H, Sutcuoglu S, Ozer EA.

Pediatr Crit Care Med. 2014 Mar;15(3):236-41. doi: 10.1097/PCC.0b013e3182a5570e.

PMID:
24608494
45.

The effect of topical ointment on neonatal sepsis in preterm infants.

Erdemir A, Kahramaner Z, Yuksel Y, Cosar H, Turkoglu E, Sutcuoglu S, Ozer EA, Kose S.

J Matern Fetal Neonatal Med. 2015 Jan;28(1):33-6. doi: 10.3109/14767058.2014.900037. Epub 2014 Apr 9.

PMID:
24588277
46.

Cranial sonography in extremely preterm infants.

Pekcevik Y, Ozer EA, Guleryuz H.

J Clin Ultrasound. 2014 Jun;42(5):283-90. doi: 10.1002/jcu.22143. Epub 2014 Feb 28. Review.

PMID:
24585484
47.

Central nervous system involvement of epstein barr virus associated lymphoproliferative disorder in a child with acute lymphoblastic leukemia: successful treatment with rituximab and interferon-alpha.

Atabay B, Türker M, Oztürk C, Sütçüoğlu S, Oniz H, Ozer EA.

Turk J Haematol. 2013 Mar;30(1):58-62. doi: 10.4274/tjh.2011.0047. Epub 2013 Mar 5.

48.

Unsynchronized nasal intermittent positive pressure versus nasal continuous positive airway pressure in preterm infants after extubation.

Kahramaner Z, Erdemir A, Turkoglu E, Cosar H, Sutcuoglu S, Ozer EA.

J Matern Fetal Neonatal Med. 2014 Jun;27(9):926-9. doi: 10.3109/14767058.2013.846316. Epub 2013 Oct 17.

PMID:
24047121
49.

Reference ranges for sonographic dimensions of the liver and spleen in preterm infants.

Kahramaner Z, Erdemir A, Cicek E, Cosar H, Turkoglu E, Sutcuoglu S, Ozer EA.

Pediatr Radiol. 2013 Nov;43(11):1464-74. doi: 10.1007/s00247-013-2729-7. Epub 2013 Aug 17.

PMID:
23955367
50.

Shanghai fever: a distinct Pseudomonas aeruginosa enteric disease.

Chuang CH, Wang YH, Chang HJ, Chen HL, Huang YC, Lin TY, Ozer EA, Allen JP, Hauser AR, Chiu CH.

Gut. 2014 May;63(5):736-43. doi: 10.1136/gutjnl-2013-304786. Epub 2013 Aug 13.

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