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Items: 1 to 50 of 578

1.

Three-dimensional virtual refocusing of fluorescence microscopy images using deep learning.

Wu Y, Rivenson Y, Wang H, Luo Y, Ben-David E, Bentolila LA, Pritz C, Ozcan A.

Nat Methods. 2019 Nov 4. doi: 10.1038/s41592-019-0622-5. [Epub ahead of print]

PMID:
31686039
2.

Nanoparticle-coupled topical methotrexate can normalize immune responses and induce tissue remodeling in psoriasis.

Özcan A, Sahin D, Impellizzieri D, Nguyen TT, Hafner J, Yawalkar N, Kurzbach D, Tan G, Akdis CA, Nilsson J, Boyman O, Kolios AGA.

J Invest Dermatol. 2019 Oct 30. pii: S0022-202X(19)33373-1. doi: 10.1016/j.jid.2019.09.018. [Epub ahead of print]

PMID:
31678057
3.

Identification of IDH and TERTp mutation status using 1 H-MRS in 112 hemispheric diffuse gliomas.

Ozturk-Isik E, Cengiz S, Ozcan A, Yakicier C, Ersen Danyeli A, Pamir MN, Özduman K, Dincer A.

J Magn Reson Imaging. 2019 Oct 30. doi: 10.1002/jmri.26964. [Epub ahead of print]

PMID:
31664773
4.

Twenty children with non-Wilms renal tumors from a reference center in Central Anatolia, Turkey.

Ünal E, Yilmaz E, Özcan A, Işik B, Karakükcü M, Turan C, Akgün H, Öztürk F, Coşkun A, Özdemir MA, Patiroğlu T.

Turk J Med Sci. 2019 Oct 27. doi: 10.3906/sag-1902-106. [Epub ahead of print]

PMID:
31655501
5.

Different Clinical Presentation of 3 Children With Familial Hemophagocytic Lymphohistiocytosis With 2 Novel Mutations.

Akyol S, Ozcan A, Sekine T, Chiang SCC, Yilmaz E, Karakurkcu M, Patiroglu T, Bryceson Y, Unal E.

J Pediatr Hematol Oncol. 2019 Oct 22. doi: 10.1097/MPH.0000000000001589. [Epub ahead of print]

PMID:
31651726
6.

Computational cytometer based on magnetically modulated coherent imaging and deep learning.

Zhang Y, Ouyang M, Ray A, Liu T, Kong J, Bai B, Kim D, Guziak A, Luo Y, Feizi A, Tsai K, Duan Z, Liu X, Kim D, Cheung C, Yalcin S, Ceylan Koydemir H, Garner OB, Di Carlo D, Ozcan A.

Light Sci Appl. 2019 Oct 2;8:91. doi: 10.1038/s41377-019-0203-5. eCollection 2019.

7.

Deep learning in holography and coherent imaging.

Rivenson Y, Wu Y, Ozcan A.

Light Sci Appl. 2019 Sep 11;8:85. doi: 10.1038/s41377-019-0196-0. eCollection 2019.

8.

Control of Citrus Canker in Greenhouse and Field with a Zinc, Urea, and Peroxide Ternary Solution.

Maxwell TJ, Rajasekaran P, Das S, Campos MGN, Young M, Mendis HC, Ozcan A, Gerberich KM, Myers ME, Graham JH, Johnson EG, Santra S.

J Agric Food Chem. 2019 Nov 13;67(45):12393-12401. doi: 10.1021/acs.jafc.9b05108. Epub 2019 Nov 5.

PMID:
31596571
9.

ILC3 deficiency and generalized ILC abnormalities in DOCK8-deficient patients.

Eken A, Cansever M, Okus FZ, Erdem S, Nain E, Azizoglu ZB, Haliloglu Y, Karakukcu M, Ozcan A, Devecioglu O, Aksu G, Arikan Ayyildiz Z, Topal E, Karakoc Aydiner E, Kiykim A, Metin A, Cipe F, Kaya A, Artac H, Reisli I, Guner SN, Uygun V, Karasu G, Dönmez Altuntas H, Canatan H, Oukka M, Ozen A, Chatila TA, Keles S, Baris S, Unal E, Patiroglu T.

Allergy. 2019 Oct 9. doi: 10.1111/all.14081. [Epub ahead of print]

PMID:
31596517
10.

Seizure Prediction in Scalp EEG Using 3D Convolutional Neural Networks With an Image-Based Approach.

Ozcan AR, Erturk S.

IEEE Trans Neural Syst Rehabil Eng. 2019 Nov;27(11):2284-2293. doi: 10.1109/TNSRE.2019.2943707. Epub 2019 Sep 25.

PMID:
31562096
11.

Medium optimization and kinetic modeling for the production of Aspergillus niger inulinase.

Germec M, Gürler HN, Ozcan A, Erkan SB, Karahalil E, Turhan I.

Bioprocess Biosyst Eng. 2019 Sep 26. doi: 10.1007/s00449-019-02219-1. [Epub ahead of print]

PMID:
31559507
12.

CD137 deficiency causes immune dysregulation with predisposition to lymphomagenesis.

Somekh I, Thian M, Medgyesi D, Gülez N, Magg T, Gallón Duque A, Stauber T, Lev A, Genel F, Unal E, Simon AJ, Lee YN, Kalinichenko A, Dmytrus J, Kraakman MJ, Schiby G, Rohlfs M, Jacobson JM, Özer E, Akcal Ö, Conca R, Patiroglu T, Karakukcu M, Ozcan A, Shahin T, Appella E, Tatematsu M, Martinez-Jaramillo C, Chinn IK, Orange JS, Trujillo-Vargas CM, Franco JL, Hauck F, Somech R, Klein C, Boztug K.

Blood. 2019 Oct 31;134(18):1510-1516. doi: 10.1182/blood.2019000644.

PMID:
31501153
13.

Computational Image Analysis of Guided Acoustic Waves Enables Rheological Assessment of Sub-nanoliter Volumes.

Khalid MA, Ray A, Cohen S, Tassieri M, Demčenko A, Tseng D, Reboud J, Ozcan A, Cooper JM.

ACS Nano. 2019 Oct 22;13(10):11062-11069. doi: 10.1021/acsnano.9b03219. Epub 2019 Sep 19.

14.

Pathological crystal imaging with single-shot computational polarized light microscopy.

Bai B, Wang H, Liu T, Rivenson Y, FitzGerald J, Ozcan A.

J Biophotonics. 2019 Sep 4:e201960036. doi: 10.1002/jbio.201960036. [Epub ahead of print]

PMID:
31483948
15.

Resolution enhancement in scanning electron microscopy using deep learning.

de Haan K, Ballard ZS, Rivenson Y, Wu Y, Ozcan A.

Sci Rep. 2019 Aug 19;9(1):12050. doi: 10.1038/s41598-019-48444-2.

16.

N-acetyl Cysteine Coated Gallium Particles Demonstrate High Potency against Pseudomonas aeruginosa PAO1.

Young M, Ozcan A, Lee B, Maxwell T, Andl T, Rajasekaran P, Beazley MJ, Tetard L, Santra S.

Pathogens. 2019 Aug 1;8(3). pii: E120. doi: 10.3390/pathogens8030120.

17.

Early detection of E. coli and total coliform using an automated, colorimetric and fluorometric fiber optics-based device.

Tok S, de Haan K, Tseng D, Usanmaz CF, Ceylan Koydemir H, Ozcan A.

Lab Chip. 2019 Sep 7;19(17):2925-2935. doi: 10.1039/c9lc00652d. Epub 2019 Aug 2.

PMID:
31372607
18.

Deep learning-based color holographic microscopy.

Liu T, Wei Z, Rivenson Y, de Haan K, Zhang Y, Wu Y, Ozcan A.

J Biophotonics. 2019 Nov;12(11):e201900107. doi: 10.1002/jbio.201900107. Epub 2019 Aug 1.

PMID:
31309728
19.

On using signal magnitude in diffusion magnetic resonance measurements of restricted motion.

Özcan A.

Magn Reson Imaging. 2019 Oct;62:209-213. doi: 10.1016/j.mri.2019.06.015. Epub 2019 Jul 6.

PMID:
31288063
20.

Distribution of psychogenic and vascular impotence in a tertiary health-care center's cohort: A retrospective study using penile Doppler imaging.

Gok B, Hamidi N, Cakici OU, Koc E, Kamaci D, Asil E, Keske M, Ozcan AN, Atmaca AF.

Rev Int Androl. 2019 Jul 1. pii: S1698-031X(19)30040-8. doi: 10.1016/j.androl.2019.01.002. [Epub ahead of print]

PMID:
31272908
21.

Nanoscience and Nanotechnology at UCLA.

Khademhosseini A, Nel AE, Bunje H, DeSantis CJ, Andrews AM, Blaik RA, Gu Z, Meng H, Ozcan A, Tolbert SH, Xia T, Zink JI, Weiss PS.

ACS Nano. 2019 Jun 25;13(6):6127-6129. doi: 10.1021/acsnano.9b04680. No abstract available.

PMID:
31247733
22.

A novel Zn chelate (TSOL) that moves systemically in citrus plants inhibits growth and biofilm formation of bacterial pathogens.

Mendis HC, Ozcan A, Santra S, De La Fuente L.

PLoS One. 2019 Jun 24;14(6):e0218900. doi: 10.1371/journal.pone.0218900. eCollection 2019.

23.

Virtual histological staining of unlabelled tissue-autofluorescence images via deep learning.

Rivenson Y, Wang H, Wei Z, de Haan K, Zhang Y, Wu Y, Günaydın H, Zuckerman JE, Chong T, Sisk AE, Westbrook LM, Wallace WD, Ozcan A.

Nat Biomed Eng. 2019 Jun;3(6):466-477. doi: 10.1038/s41551-019-0362-y. Epub 2019 Mar 4.

PMID:
31142829
24.

Smartphone-imaged microfluidic biochip for measuring CD64 expression from whole blood.

Ghonge T, Ceylan Koydemir H, Valera E, Berger J, Garcia C, Nawar N, Tiao J, Damhorst GL, Ganguli A, Hassan U, Ozcan A, Bashir R.

Analyst. 2019 Jul 7;144(13):3925-3935. doi: 10.1039/c9an00532c. Epub 2019 May 16.

PMID:
31094395
25.

A Rare Case of Activated Phosphoinositide 3-Kinase Delta Syndrome (APDS) Presenting With Hemophagocytosis Complicated With Hodgkin Lymphoma.

Cansever M, Zietara N, Chiang SCC, Ozcan A, Yilmaz E, Karakukcu M, Rohlfs M, Somekh I, Canoz O, Abdulrezzak U, Bryceson Y, Klein C, Unal E, Patiroglu T.

J Pediatr Hematol Oncol. 2019 Apr 24. doi: 10.1097/MPH.0000000000001487. [Epub ahead of print]

PMID:
31033788
26.

Genetic Deficiency and Biochemical Inhibition of ITK Affect Human Th17, Treg, and Innate Lymphoid Cells.

Eken A, Cansever M, Somekh I, Mizoguchi Y, Zietara N, Okus FZ, Erdem S, Canatan H, Akyol S, Ozcan A, Karakukcu M, Hollizeck S, Rohlfs M, Unal E, Klein C, Patiroglu T.

J Clin Immunol. 2019 May;39(4):391-400. doi: 10.1007/s10875-019-00632-5. Epub 2019 Apr 25.

PMID:
31025232
27.

Nucleic acid quantification in the field.

Ballard Z, Ozcan A.

Nat Biomed Eng. 2018 Sep;2(9):629-630. doi: 10.1038/s41551-018-0292-0. No abstract available.

PMID:
31015678
28.

An 8-Month-Old Girl With Vesicular Rash.

Ozcan A, Kahale K, Nguyen D.

Glob Pediatr Health. 2019 Mar 29;6:2333794X19838526. doi: 10.1177/2333794X19838526. eCollection 2019.

29.

Comparison of the Effects of Sevoflurane and Desflurane on Thiol-Disulfide Homeostasis in Patients Undergoing Laparoscopic Cholecystectomy.

Ozcan ATD, Doger C, Ozturk L, Yungul A, Kurtsahin M, Neselioglu S, Ergin M, But A.

Eurasian J Med. 2019 Feb;51(1):70-74. doi: 10.5152/eurasianjmed.2019.18299.

30.

Color Doppler imaging of ocular hemodynamic changes in patients with rheumatoid arthritis unrelated to disease activity.

Unal O, Can ME, Ozcan A, Ozcan ME, Erten S, Cagil N.

Rheumatol Int. 2019 Jun;39(6):1001-1006. doi: 10.1007/s00296-019-04275-y. Epub 2019 Mar 12.

PMID:
30864110
31.

Intracranial abscess developed after ganciclovir treatment: A case report.

Cansever M, Ozmansur EN, Ozcan A, Kahraman ZF, Patiroglu T.

North Clin Istanb. 2018 Aug 9;5(4):353-356. doi: 10.14744/nci.2017.13284. eCollection 2018.

32.

Bright-field holography: cross-modality deep learning enables snapshot 3D imaging with bright-field contrast using a single hologram.

Wu Y, Luo Y, Chaudhari G, Rivenson Y, Calis A, de Haan K, Ozcan A.

Light Sci Appl. 2019 Mar 6;8:25. doi: 10.1038/s41377-019-0139-9. eCollection 2019.

33.

Deep learning-based super-resolution in coherent imaging systems.

Liu T, de Haan K, Rivenson Y, Wei Z, Zeng X, Zhang Y, Ozcan A.

Sci Rep. 2019 Mar 8;9(1):3926. doi: 10.1038/s41598-019-40554-1.

34.

Phase recovery and holographic image reconstruction using deep learning in neural networks.

Rivenson Y, Zhang Y, Günaydın H, Teng D, Ozcan A.

Light Sci Appl. 2018 Feb 23;7:17141. doi: 10.1038/lsa.2017.141. eCollection 2018.

35.

Investigation of the effect of para-amino benzoic acid (PABA) added starch-coated chemicals on the printability properties of paper.

Ozcan A.

J Appl Biomater Funct Mater. 2019 Jan-Mar;17(1):2280800018816012. doi: 10.1177/2280800018816012.

PMID:
30803284
36.

Benchmarking Smartphone Fluorescence-Based Microscopy with DNA Origami Nanobeads: Reducing the Gap toward Single-Molecule Sensitivity.

Vietz C, Schütte ML, Wei Q, Richter L, Lalkens B, Ozcan A, Tinnefeld P, Acuna GP.

ACS Omega. 2019 Jan 31;4(1):637-642. doi: 10.1021/acsomega.8b03136. Epub 2019 Jan 9.

37.

Paper-based multiplexed vertical flow assay for point-of-care testing.

Joung HA, Ballard ZS, Ma A, Tseng DK, Teshome H, Burakowski S, Garner OB, Di Carlo D, Ozcan A.

Lab Chip. 2019 Mar 13;19(6):1027-1034. doi: 10.1039/c9lc00011a.

PMID:
30729974
38.

PhaseStain: the digital staining of label-free quantitative phase microscopy images using deep learning.

Rivenson Y, Liu T, Wei Z, Zhang Y, de Haan K, Ozcan A.

Light Sci Appl. 2019 Feb 6;8:23. doi: 10.1038/s41377-019-0129-y. eCollection 2019.

39.

Rapid imaging, detection, and quantification of Nosema ceranae spores in honey bees using mobile phone-based fluorescence microscopy.

Snow JW, Ceylan Koydemir H, Karinca DK, Liang K, Tseng D, Ozcan A.

Lab Chip. 2019 Feb 26;19(5):789-797. doi: 10.1039/c8lc01342j.

PMID:
30719512
40.

Evaluation of childhood solid pseudopapillary tumors of the pancreas.

Ozcan A, Arslanoglu C, Unal E, Patiroglu T, Ozdemir MA, Deniz K, Ozcan SS, Karakukcu M.

North Clin Istanb. 2018 Sep;5(3):207-210. doi: 10.14744/nci.2017.27443.

41.

The relationship between the prognosis of children with acute arterial stroke and polymorphisms of CDKN2B, HDAC9, NINJ2, NAA25 genes.

Bozpolat A, Unal E, Topaloglu T, Taheri S, Bayram AK, Ozcan A, Karakukcu M, Ozdemir MA, Per H.

J Thromb Thrombolysis. 2019 May;47(4):578-584. doi: 10.1007/s11239-018-01802-9.

PMID:
30656483
42.

Changing trends in the Turkish maternal deaths, with a focus on direct and indirect causes.

Engin-Üstün Y, Sanisoğlu S, Keskin HL, Karaahmetoğlu S, Özcan A, Çelen Ş, Üstün Y, Alkan A, Ongun V, Şencan İ.

Eur J Obstet Gynecol Reprod Biol. 2019 Mar;234:21-25. doi: 10.1016/j.ejogrb.2018.12.031. Epub 2019 Jan 6.

PMID:
30640122
43.

A mummy emerges from the grave: Scurvy confounding the clinical presentation of a child with Fanconi anemia.

Ozcan A, Saracoglu S, Verboon JM, Karakukcu M, Patiroglu T, Coskun A, Sankaran VG, Unal E.

Am J Hematol. 2019 Apr;94(4):506-507. doi: 10.1002/ajh.25402. Epub 2019 Jan 25. No abstract available.

PMID:
30637794
44.

Propranolol treatment for chylothorax due to diffuse lymphangiomatosis.

Hangul M, Kose M, Ozcan A, Unal E.

Pediatr Blood Cancer. 2019 May;66(5):e27592. doi: 10.1002/pbc.27592. Epub 2019 Jan 4. No abstract available.

PMID:
30609288
45.

Motility-based label-free detection of parasites in bodily fluids using holographic speckle analysis and deep learning.

Zhang Y, Ceylan Koydemir H, Shimogawa MM, Yalcin S, Guziak A, Liu T, Oguz I, Huang Y, Bai B, Luo Y, Luo Y, Wei Z, Wang H, Bianco V, Zhang B, Nadkarni R, Hill K, Ozcan A.

Light Sci Appl. 2018 Dec 12;7:108. doi: 10.1038/s41377-018-0110-1. eCollection 2018.

46.

Deep learning enables cross-modality super-resolution in fluorescence microscopy.

Wang H, Rivenson Y, Jin Y, Wei Z, Gao R, Günaydın H, Bentolila LA, Kural C, Ozcan A.

Nat Methods. 2019 Jan;16(1):103-110. doi: 10.1038/s41592-018-0239-0. Epub 2018 Dec 17.

PMID:
30559434
47.

The diagnostic role of pentraxin-3 in the differential diagnosis of pleural effusions

Çiftci F, Bilgin G, Özcan AN, Doğan Ö, Yüksel A, Erol S, Çiledağ A, Kaya A.

Turk J Med Sci. 2018 Dec 12;48(6):1167-1174. doi: 10.3906/sag-1710-115.

PMID:
30541243
48.

Design and validation of a wide-field mobile phone microscope for the diagnosis of schistosomiasis.

Koydemir HC, Coulibaly JT, Tseng D, Bogoch II, Ozcan A.

Travel Med Infect Dis. 2019 Jul - Aug;30:128-129. doi: 10.1016/j.tmaid.2018.12.001. Epub 2018 Dec 4. No abstract available.

PMID:
30528744
49.

Nanoparticles in mitigating gaseous emissions from liquid dairy manure stored under anaerobic condition.

Sarker NC, Rahman S, Borhan MS, Rajasekaran P, Santra S, Ozcan A.

J Environ Sci (China). 2019 Feb;76:26-36. doi: 10.1016/j.jes.2018.03.014. Epub 2018 Mar 24.

PMID:
30528017
50.

Ischemic optic neuropathy in robotic-assisted gynaecologic surgery: A case report.

Ozcan AA, Ulas B.

J Obstet Gynaecol Res. 2019 Mar;45(3):748-750. doi: 10.1111/jog.13877. Epub 2018 Dec 6.

PMID:
30520549

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