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Amphibian skin-associated Pigmentiphaga: Genome sequence and occurrence across geography and hosts.

Bletz MC, Bunk B, Spröer C, Biwer P, Reiter S, Rabemananjara FCE, Schulz S, Overmann J, Vences M.

PLoS One. 2019 Oct 11;14(10):e0223747. doi: 10.1371/journal.pone.0223747. eCollection 2019.


Complete Genome Sequence of the Plant Growth-Promoting Bacterium Hartmannibacter diazotrophicus Strain E19T.

Suarez C, Ratering S, Hain T, Fritzenwanker M, Goesmann A, Blom J, Chakraborty T, Bunk B, Spröer C, Overmann J, Schnell S.

Int J Genomics. 2019 Sep 9;2019:7586430. doi: 10.1155/2019/7586430. eCollection 2019.


Trophic networks improve the performance of microbial anodes treating wastewater.

Koch C, Huber KJ, Bunk B, Overmann J, Harnisch F.

NPJ Biofilms Microbiomes. 2019 Sep 27;5:27. doi: 10.1038/s41522-019-0100-y. eCollection 2019.


A Metataxonomic Tool to Investigate the Diversity of Treponema.

Hallmaier-Wacker LK, Lüert S, Gronow S, Spröer C, Overmann J, Buller N, Vaughan-Higgins RJ, Knauf S.

Front Microbiol. 2019 Sep 10;10:2094. doi: 10.3389/fmicb.2019.02094. eCollection 2019.


Proteotyping of Clostridioides difficile as Alternate Typing Method to Ribotyping Is Able to Distinguish the Ribotypes RT027 and RT176 From Other Ribotypes.

Emele MF, Joppe FM, Riedel T, Overmann J, Rupnik M, Cooper P, Kusumawati RL, Berger FK, Laukien F, Zimmermann O, Bohne W, Groß U, Bader O, Zautner AE.

Front Microbiol. 2019 Sep 10;10:2087. doi: 10.3389/fmicb.2019.02087. eCollection 2019.


Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics.

Nelkner J, Tejerizo GT, Hassa J, Lin TW, Witte J, Verwaaijen B, Winkler A, Bunk B, Spröer C, Overmann J, Grosch R, Pühler A, Schlüter AA.

Genes (Basel). 2019 Aug 9;10(8). pii: E601. doi: 10.3390/genes10080601.


Next Generation DNA-Seq and Differential RNA-Seq Allow Re-annotation of the Pyrococcus furiosus DSM 3638 Genome and Provide Insights Into Archaeal Antisense Transcription.

Grünberger F, Reichelt R, Bunk B, Spröer C, Overmann J, Rachel R, Grohmann D, Hausner W.

Front Microbiol. 2019 Jul 12;10:1603. doi: 10.3389/fmicb.2019.01603. eCollection 2019.


Bacterial colonization of minerals in grassland soils is selective and highly dynamic.

Vieira S, Sikorski J, Gebala A, Boeddinghaus RS, Marhan S, Rennert T, Kandeler E, Overmann J.

Environ Microbiol. 2019 Jul 19. doi: 10.1111/1462-2920.14751. [Epub ahead of print]


A Novel Group of Rhizobium tumorigenes-Like Agrobacteria Associated with Crown Gall Disease of Rhododendron and Blueberry.

Kuzmanović N, Behrens P, Idczak E, Wagner S, Götz M, Spröer C, Bunk B, Overmann J, Smalla K.

Phytopathology. 2019 Oct 2:PHYTO05190167R. doi: 10.1094/PHYTO-05-19-0167-R. [Epub ahead of print]


Discovery pipelines for marine resources: an ocean of opportunity for biotechnology?

Smith D, Buddie AG, Goss RJM, Overmann J, Lepleux C, Brönstrup M, Kloareg B, Meiners T, Brennecke P, Ianora A, Bouget FY, Gribbon P, Pina M.

World J Microbiol Biotechnol. 2019 Jul 2;35(7):107. doi: 10.1007/s11274-019-2685-y. Review.


Corrigendum: Fuerstia marisgermanicae gen. nov., sp. nov., an Unusual Member of the Phylum Planctomycetes From the German Wadden Sea.

Kohn T, Heuer A, Jogler M, Vollmers J, Boedeker C, Bunk B, Rast P, Borchert D, Glöckner I, Freese HM, Klenk HP, Overmann J, Kaster AK, Rohde M, Wiegand S, Jogler C.

Front Microbiol. 2019 May 15;10:1029. doi: 10.3389/fmicb.2019.01029. eCollection 2019.


A Dual Role for Ca2+ in Expanding the Spectral Diversity and Stability of Light-Harvesting 1 Reaction Center Photocomplexes of Purple Phototrophic Bacteria.

Imanishi M, Takenouchi M, Takaichi S, Nakagawa S, Saga Y, Takenaka S, Madigan MT, Overmann J, Wang-Otomo ZY, Kimura Y.

Biochemistry. 2019 Jun 25;58(25):2844-2852. doi: 10.1021/acs.biochem.9b00351. Epub 2019 Jun 13.


Within-host evolution of Helicobacter pylori shaped by niche-specific adaptation, intragastric migrations and selective sweeps.

Ailloud F, Didelot X, Woltemate S, Pfaffinger G, Overmann J, Bader RC, Schulz C, Malfertheiner P, Suerbaum S.

Nat Commun. 2019 May 22;10(1):2273. doi: 10.1038/s41467-019-10050-1.


Comparative Transcriptomic Profiling of Yersinia enterocolitica O:3 and O:8 Reveals Major Expression Differences of Fitness- and Virulence-Relevant Genes Indicating Ecological Separation.

Schmühl C, Beckstette M, Heroven AK, Bunk B, Spröer C, McNally A, Overmann J, Dersch P.

mSystems. 2019 Apr 23;4(2). pii: e00239-18. doi: 10.1128/mSystems.00239-18. eCollection 2019 Mar-Apr.


Cytology and the cell block method in diagnostic characterization of canine lymphadenopathy and in the immunophenotyping of nodal lymphoma.

Heinrich DA, Avery AC, Henson MS, Overmann JA, Rendahl AK, Walz JZ, Seelig DM.

Vet Comp Oncol. 2019 Sep;17(3):365-375. doi: 10.1111/vco.12484. Epub 2019 Jun 13.


The use of genomic DNA sequences as type material for valid publication of bacterial species names will have severe implications for clinical microbiology and related disciplines.

Bisgaard M, Christensen H, Clermont D, Dijkshoorn L, Janda JM, Moore ERB, Nemec A, Nørskov-Lauritsen N, Overmann J, Reubsaet FAG.

Diagn Microbiol Infect Dis. 2019 Sep;95(1):102-103. doi: 10.1016/j.diagmicrobio.2019.03.007. Epub 2019 Mar 22. No abstract available.


Genomic and transcriptomic characterization of Pseudomonas aeruginosa small colony variants derived from a chronic infection model.

Irvine S, Bunk B, Bayes HK, Spröer C, Connolly JPR, Six A, Evans TJ, Roe AJ, Overmann J, Walker D.

Microb Genom. 2019 Apr;5(4). doi: 10.1099/mgen.0.000262. Epub 2019 Mar 28.


Complete Genome Sequence of the Silicimonas algicola Type Strain, a Representative of the Marine Roseobacter Group Isolated from the Cell Surface of the Marine Diatom Thalassiosira delicatula.

Crenn K, Bunk B, Spröer C, Overmann J, Jeanthon C.

Microbiol Resour Announc. 2019 Feb 28;8(9). pii: e00108-19. doi: 10.1128/MRA.00108-19. eCollection 2019 Feb.


Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family.

Lagkouvardos I, Lesker TR, Hitch TCA, Gálvez EJC, Smit N, Neuhaus K, Wang J, Baines JF, Abt B, Stecher B, Overmann J, Strowig T, Clavel T.

Microbiome. 2019 Feb 19;7(1):28. doi: 10.1186/s40168-019-0637-2.


Cobaviruses - a new globally distributed phage group infecting Rhodobacteraceae in marine ecosystems.

Bischoff V, Bunk B, Meier-Kolthoff JP, Spröer C, Poehlein A, Dogs M, Nguyen M, Petersen J, Daniel R, Overmann J, Göker M, Simon M, Brinkhoff T, Moraru C.

ISME J. 2019 Jun;13(6):1404-1421. doi: 10.1038/s41396-019-0362-7. Epub 2019 Feb 4.


Genomic analysis of three Clostridioides difficile isolates from urban water sources.

Numberger D, Riedel T, McEwen G, Nübel U, Frentrup M, Schober I, Bunk B, Spröer C, Overmann J, Grossart HP, Greenwood AD.

Anaerobe. 2019 Apr;56:22-26. doi: 10.1016/j.anaerobe.2019.01.002. Epub 2019 Jan 8.


Day and Night: Metabolic Profiles and Evolutionary Relationships of Six Axenic Non-Marine Cyanobacteria.

Will SE, Henke P, Boedeker C, Huang S, Brinkmann H, Rohde M, Jarek M, Friedl T, Seufert S, Schumacher M, Overmann J, Neumann-Schaal M, Petersen J.

Genome Biol Evol. 2019 Jan 1;11(1):270-294. doi: 10.1093/gbe/evy275.


Divergent evolution in the genomes of closely related lacertids, Lacerta viridis and L. bilineata, and implications for speciation.

Kolora SRR, Weigert A, Saffari A, Kehr S, Walter Costa MB, Spröer C, Indrischek H, Chintalapati M, Lohse K, Doose G, Overmann J, Bunk B, Bleidorn C, Grimm-Seyfarth A, Henle K, Nowick K, Faria R, Stadler PF, Schlegel M.

Gigascience. 2019 Feb 1;8(2). pii: giy160. doi: 10.1093/gigascience/giy160.


Evidence for an Adaptation of a Phage-Derived Holin/Endolysin System to Toxin Transport in Clostridioides difficile.

Mehner-Breitfeld D, Rathmann C, Riedel T, Just I, Gerhard R, Overmann J, Brüser T.

Front Microbiol. 2018 Oct 18;9:2446. doi: 10.3389/fmicb.2018.02446. eCollection 2018.


BacDive in 2019: bacterial phenotypic data for High-throughput biodiversity analysis.

Reimer LC, Vetcininova A, Carbasse JS, Söhngen C, Gleim D, Ebeling C, Overmann J.

Nucleic Acids Res. 2019 Jan 8;47(D1):D631-D636. doi: 10.1093/nar/gky879.


Characterization of a clinical Clostridioides difficile isolate with markedly reduced fidaxomicin susceptibility and a V1143D mutation in rpoB.

Schwanbeck J, Riedel T, Laukien F, Schober I, Oehmig I, Zimmermann O, Overmann J, Groß U, Zautner AE, Bohne W.

J Antimicrob Chemother. 2019 Jan 1;74(1):6-10. doi: 10.1093/jac/dky375.


Kyrpidia spormannii sp. nov., a thermophilic, hydrogen-oxidizing, facultative autotroph, isolated from hydrothermal systems at São Miguel Island, and emended description of the genus Kyrpidia.

Reiner JE, Jung T, Lapp CJ, Siedler M, Bunk B, Overmann J, Gescher J.

Int J Syst Evol Microbiol. 2018 Dec;68(12):3735-3740. doi: 10.1099/ijsem.0.003037. Epub 2018 Sep 20.


Novel Clade C-I Clostridium difficile strains escape diagnostic tests, differ in pathogenicity potential and carry toxins on extrachromosomal elements.

Ramírez-Vargas G, López-Ureña D, Badilla A, Orozco-Aguilar J, Murillo T, Rojas P, Riedel T, Overmann J, González G, Chaves-Olarte E, Quesada-Gómez C, Rodríguez C.

Sci Rep. 2018 Sep 17;8(1):13951. doi: 10.1038/s41598-018-32390-6.


Comparative Genomics Reveal a Flagellar System, a Type VI Secretion System and Plant Growth-Promoting Gene Clusters Unique to the Endophytic Bacterium Kosakonia radicincitans.

Becker M, Patz S, Becker Y, Berger B, Drungowski M, Bunk B, Overmann J, Spröer C, Reetz J, Tchuisseu Tchakounte GV, Ruppel S.

Front Microbiol. 2018 Aug 30;9:1997. doi: 10.3389/fmicb.2018.01997. eCollection 2018.


The transducer-like protein Tlp12 of Campylobacter jejuni is involved in glutamate and pyruvate chemotaxis.

Lübke AL, Minatelli S, Riedel T, Lugert R, Schober I, Spröer C, Overmann J, Groß U, Zautner AE, Bohne W.

BMC Microbiol. 2018 Sep 10;18(1):111. doi: 10.1186/s12866-018-1254-0.


Relevance of phenotypic information for the taxonomy of not-yet-cultured microorganisms.

Overmann J, Huang S, Nübel U, Hahnke RL, Tindall BJ.

Syst Appl Microbiol. 2019 Jan;42(1):22-29. doi: 10.1016/j.syapm.2018.08.009. Epub 2018 Aug 24.


Listeria goaensis sp. nov.

Doijad SP, Poharkar KV, Kale SB, Kerkar S, Kalorey DR, Kurkure NV, Rawool DB, Malik SVS, Ahmad RY, Hudel M, Chaudhari SP, Abt B, Overmann J, Weigel M, Hain T, Barbuddhe SB, Chakraborty T.

Int J Syst Evol Microbiol. 2018 Oct;68(10):3285-3291. doi: 10.1099/ijsem.0.002980. Epub 2018 Aug 29.


Prevalence and Strain Characterization of Clostridioides (Clostridium) difficile in Representative Regions of Germany, Ghana, Tanzania and Indonesia - A Comparative Multi-Center Cross-Sectional Study.

Seugendo M, Janssen I, Lang V, Hasibuan I, Bohne W, Cooper P, Daniel R, Gunka K, Kusumawati RL, Mshana SE, von Müller L, Okamo B, Ortlepp JR, Overmann J, Riedel T, Rupnik M, Zimmermann O, Groß U.

Front Microbiol. 2018 Aug 7;9:1843. doi: 10.3389/fmicb.2018.01843. eCollection 2018.


Long-read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environments.

Heeger F, Bourne EC, Baschien C, Yurkov A, Bunk B, Spröer C, Overmann J, Mazzoni CJ, Monaghan MT.

Mol Ecol Resour. 2018 Nov;18(6):1500-1514. doi: 10.1111/1755-0998.12937. Epub 2018 Sep 23.


ATP Content and Cell Viability as Indicators for Cryostress Across the Diversity of Life.

Bajerski F, Stock J, Hanf B, Darienko T, Heine-Dobbernack E, Lorenz M, Naujox L, Keller ERJ, Schumacher HM, Friedl T, Eberth S, Mock HP, Kniemeyer O, Overmann J.

Front Physiol. 2018 Jul 17;9:921. doi: 10.3389/fphys.2018.00921. eCollection 2018.


Genetic Adaptation of a Mevalonate Pathway Deficient Mutant in Staphylococcus aureus.

Reichert S, Ebner P, Bonetti EJ, Luqman A, Nega M, Schrenzel J, Spröer C, Bunk B, Overmann J, Sass P, François P, Götz F.

Front Microbiol. 2018 Jul 12;9:1539. doi: 10.3389/fmicb.2018.01539. eCollection 2018.


Convergent Loss of ABC Transporter Genes From Clostridioides difficile Genomes Is Associated With Impaired Tyrosine Uptake and p-Cresol Production.

Steglich M, Hofmann JD, Helmecke J, Sikorski J, Spröer C, Riedel T, Bunk B, Overmann J, Neumann-Schaal M, Nübel U.

Front Microbiol. 2018 May 8;9:901. doi: 10.3389/fmicb.2018.00901. eCollection 2018.


Vicinamibacteraceae fam. nov., the first described family within the subdivision 6 Acidobacteria.

Huber KJ, Overmann J.

Int J Syst Evol Microbiol. 2018 Jul;68(7):2331-2334. doi: 10.1099/ijsem.0.002841. Epub 2018 May 29.


Whole-genome comparison of high and low virulent Staphylococcus aureus isolates inducing implant-associated bone infections.

Mannala GK, Koettnitz J, Mohamed W, Sommer U, Lips KS, Spröer C, Bunk B, Overmann J, Hain T, Heiss C, Domann E, Alt V.

Int J Med Microbiol. 2018 Jul;308(5):505-513. doi: 10.1016/j.ijmm.2018.04.005. Epub 2018 Apr 25.


Two Groups of Cocirculating, Epidemic Clostridiodes difficile Strains Microdiversify through Different Mechanisms.

Murillo T, Ramírez-Vargas G, Riedel T, Overmann J, Andersen JM, Guzmán-Verri C, Chaves-Olarte E, Rodríguez C.

Genome Biol Evol. 2018 Mar 1;10(3):982-998. doi: 10.1093/gbe/evy059.


Enterobacter bugandensis: a novel enterobacterial species associated with severe clinical infection.

Pati NB, Doijad SP, Schultze T, Mannala GK, Yao Y, Jaiswal S, Ryan D, Suar M, Gwozdzinski K, Bunk B, Mraheil MA, Marahiel MA, Hegemann JD, Spröer C, Goesmann A, Falgenhauer L, Hain T, Imirzalioglu C, Mshana SE, Overmann J, Chakraborty T.

Sci Rep. 2018 Mar 29;8(1):5392. doi: 10.1038/s41598-018-23069-z.


Isoprenoid Quinones Resolve the Stratification of Redox Processes in a Biogeochemical Continuum from the Photic Zone to Deep Anoxic Sediments of the Black Sea.

Becker KW, Elling FJ, Schröder JM, Lipp JS, Goldhammer T, Zabel M, Elvert M, Overmann J, Hinrichs KU.

Appl Environ Microbiol. 2018 May 1;84(10). pii: e02736-17. doi: 10.1128/AEM.02736-17. Print 2018 May 15.


Synchronous termination of replication of the two chromosomes is an evolutionary selected feature in Vibrionaceae.

Kemter FS, Messerschmidt SJ, Schallopp N, Sobetzko P, Lang E, Bunk B, Spröer C, Teschler JK, Yildiz FH, Overmann J, Waldminghaus T.

PLoS Genet. 2018 Mar 5;14(3):e1007251. doi: 10.1371/journal.pgen.1007251. eCollection 2018 Mar.


Roseisolibacter agri gen. nov., sp. nov., a novel slow-growing member of the under-represented phylum Gemmatimonadetes.

Pascual J, Foesel BU, Geppert A, Huber KJ, Boedeker C, Luckner M, Wanner G, Overmann J.

Int J Syst Evol Microbiol. 2018 Apr;68(4):1028-1036. doi: 10.1099/ijsem.0.002619. Epub 2018 Feb 14.


Complete Genome Sequence of Kyrpidia sp. Strain EA-1, a Thermophilic Knallgas Bacterium, Isolated from the Azores.

Reiner JE, Lapp CJ, Bunk B, Spröer C, Overmann J, Gescher J.

Genome Announc. 2018 Jan 18;6(3). pii: e01505-17. doi: 10.1128/genomeA.01505-17.


Host Specificity for Bacterial, Archaeal and Fungal Communities Determined for High- and Low-Microbial Abundance Sponge Species in Two Genera.

Chaib De Mares M, Sipkema D, Huang S, Bunk B, Overmann J, van Elsas JD.

Front Microbiol. 2017 Dec 20;8:2560. doi: 10.3389/fmicb.2017.02560. eCollection 2017.


Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile.

Groß U, Brzuszkiewicz E, Gunka K, Starke J, Riedel T, Bunk B, Spröer C, Wetzel D, Poehlein A, Chibani C, Bohne W, Overmann J, Zimmermann O, Daniel R, Liesegang H.

BMC Genomics. 2018 Jan 2;19(1):1. doi: 10.1186/s12864-017-4368-0.


Trajectories and Drivers of Genome Evolution in Surface-Associated Marine Phaeobacter.

Freese HM, Sikorski J, Bunk B, Scheuner C, Meier-Kolthoff JP, Spröer C, Gram L, Overmann J.

Genome Biol Evol. 2017 Dec 1;9(12):3297-3311. doi: 10.1093/gbe/evx249.


Monitoring microevolution of OXA-48-producing Klebsiella pneumoniae ST147 in a hospital setting by SMRT sequencing.

Zautner AE, Bunk B, Pfeifer Y, Spröer C, Reichard U, Eiffert H, Scheithauer S, Groß U, Overmann J, Bohne W.

J Antimicrob Chemother. 2017 Oct 1;72(10):2737-2744. doi: 10.1093/jac/dkx216.


Genome and Methylome Variation in Helicobacter pylori With a cag Pathogenicity Island During Early Stages of Human Infection.

Nell S, Estibariz I, Krebes J, Bunk B, Graham DY, Overmann J, Song Y, Spröer C, Yang I, Wex T, Korlach J, Malfertheiner P, Suerbaum S.

Gastroenterology. 2018 Feb;154(3):612-623.e7. doi: 10.1053/j.gastro.2017.10.014. Epub 2017 Oct 21.


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