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Items: 1 to 50 of 184

1.

Complete Genome Sequence of the Silicimonas algicola Type Strain, a Representative of the Marine Roseobacter Group Isolated from the Cell Surface of the Marine Diatom Thalassiosira delicatula.

Crenn K, Bunk B, Spröer C, Overmann J, Jeanthon C.

Microbiol Resour Announc. 2019 Feb 28;8(9). pii: e00108-19. doi: 10.1128/MRA.00108-19. eCollection 2019 Feb.

2.

Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family.

Lagkouvardos I, Lesker TR, Hitch TCA, Gálvez EJC, Smit N, Neuhaus K, Wang J, Baines JF, Abt B, Stecher B, Overmann J, Strowig T, Clavel T.

Microbiome. 2019 Feb 19;7(1):28. doi: 10.1186/s40168-019-0637-2.

3.

Cobaviruses - a new globally distributed phage group infecting Rhodobacteraceae in marine ecosystems.

Bischoff V, Bunk B, Meier-Kolthoff JP, Spröer C, Poehlein A, Dogs M, Nguyen M, Petersen J, Daniel R, Overmann J, Göker M, Simon M, Brinkhoff T, Moraru C.

ISME J. 2019 Feb 4. doi: 10.1038/s41396-019-0362-7. [Epub ahead of print]

PMID:
30718806
4.

Genomic analysis of three Clostridioidesdifficile isolates from urban water sources.

Numberger D, Riedel T, McEwen G, Nübel U, Frentrup M, Schober I, Bunk B, Spröer C, Overmann J, Grossart HP, Greenwood AD.

Anaerobe. 2019 Jan 8;56:22-26. doi: 10.1016/j.anaerobe.2019.01.002. [Epub ahead of print]

PMID:
30633971
5.

Day and Night: Metabolic Profiles and Evolutionary Relationships of Six Axenic Non-Marine Cyanobacteria.

Will SE, Henke P, Boedeker C, Huang S, Brinkmann H, Rohde M, Jarek M, Friedl T, Seufert S, Schumacher M, Overmann J, Neumann-Schaal M, Petersen J.

Genome Biol Evol. 2019 Jan 1;11(1):270-294. doi: 10.1093/gbe/evy275.

6.

Divergent evolution in the genomes of closely related lacertids, Lacerta viridis and L. bilineata, and implications for speciation.

Kolora SRR, Weigert A, Saffari A, Kehr S, Walter Costa MB, Spröer C, Indrischek H, Chintalapati M, Lohse K, Doose G, Overmann J, Bunk B, Bleidorn C, Grimm-Seyfarth A, Henle K, Nowick K, Faria R, Stadler PF, Schlegel M.

Gigascience. 2019 Feb 1;8(2). pii: giy160. doi: 10.1093/gigascience/giy160.

7.

Evidence for an Adaptation of a Phage-Derived Holin/Endolysin System to Toxin Transport in Clostridioides difficile.

Mehner-Breitfeld D, Rathmann C, Riedel T, Just I, Gerhard R, Overmann J, Brüser T.

Front Microbiol. 2018 Oct 18;9:2446. doi: 10.3389/fmicb.2018.02446. eCollection 2018.

8.

BacDive in 2019: bacterial phenotypic data for High-throughput biodiversity analysis.

Reimer LC, Vetcininova A, Carbasse JS, Söhngen C, Gleim D, Ebeling C, Overmann J.

Nucleic Acids Res. 2019 Jan 8;47(D1):D631-D636. doi: 10.1093/nar/gky879.

9.

Characterization of a clinical Clostridioides difficile isolate with markedly reduced fidaxomicin susceptibility and a V1143D mutation in rpoB.

Schwanbeck J, Riedel T, Laukien F, Schober I, Oehmig I, Zimmermann O, Overmann J, Groß U, Zautner AE, Bohne W.

J Antimicrob Chemother. 2019 Jan 1;74(1):6-10. doi: 10.1093/jac/dky375.

PMID:
30247587
10.

Kyrpidia spormannii sp. nov., a thermophilic, hydrogen-oxidizing, facultative autotroph, isolated from hydrothermal systems at São Miguel Island, and emended description of the genus Kyrpidia.

Reiner JE, Jung T, Lapp CJ, Siedler M, Bunk B, Overmann J, Gescher J.

Int J Syst Evol Microbiol. 2018 Dec;68(12):3735-3740. doi: 10.1099/ijsem.0.003037. Epub 2018 Sep 20.

PMID:
30234478
11.

Novel Clade C-I Clostridium difficile strains escape diagnostic tests, differ in pathogenicity potential and carry toxins on extrachromosomal elements.

Ramírez-Vargas G, López-Ureña D, Badilla A, Orozco-Aguilar J, Murillo T, Rojas P, Riedel T, Overmann J, González G, Chaves-Olarte E, Quesada-Gómez C, Rodríguez C.

Sci Rep. 2018 Sep 17;8(1):13951. doi: 10.1038/s41598-018-32390-6.

12.

Comparative Genomics Reveal a Flagellar System, a Type VI Secretion System and Plant Growth-Promoting Gene Clusters Unique to the Endophytic Bacterium Kosakonia radicincitans.

Becker M, Patz S, Becker Y, Berger B, Drungowski M, Bunk B, Overmann J, Spröer C, Reetz J, Tchuisseu Tchakounte GV, Ruppel S.

Front Microbiol. 2018 Aug 30;9:1997. doi: 10.3389/fmicb.2018.01997. eCollection 2018.

13.

The transducer-like protein Tlp12 of Campylobacter jejuni is involved in glutamate and pyruvate chemotaxis.

Lübke AL, Minatelli S, Riedel T, Lugert R, Schober I, Spröer C, Overmann J, Groß U, Zautner AE, Bohne W.

BMC Microbiol. 2018 Sep 10;18(1):111. doi: 10.1186/s12866-018-1254-0.

14.

Relevance of phenotypic information for the taxonomy of not-yet-cultured microorganisms.

Overmann J, Huang S, Nübel U, Hahnke RL, Tindall BJ.

Syst Appl Microbiol. 2019 Jan;42(1):22-29. doi: 10.1016/j.syapm.2018.08.009. Epub 2018 Aug 24.

PMID:
30197212
15.

Listeria goaensis sp. nov.

Doijad SP, Poharkar KV, Kale SB, Kerkar S, Kalorey DR, Kurkure NV, Rawool DB, Malik SVS, Ahmad RY, Hudel M, Chaudhari SP, Abt B, Overmann J, Weigel M, Hain T, Barbuddhe SB, Chakraborty T.

Int J Syst Evol Microbiol. 2018 Oct;68(10):3285-3291. doi: 10.1099/ijsem.0.002980. Epub 2018 Aug 29.

PMID:
30156532
16.

Prevalence and Strain Characterization of Clostridioides (Clostridium) difficile in Representative Regions of Germany, Ghana, Tanzania and Indonesia - A Comparative Multi-Center Cross-Sectional Study.

Seugendo M, Janssen I, Lang V, Hasibuan I, Bohne W, Cooper P, Daniel R, Gunka K, Kusumawati RL, Mshana SE, von Müller L, Okamo B, Ortlepp JR, Overmann J, Riedel T, Rupnik M, Zimmermann O, Groß U.

Front Microbiol. 2018 Aug 7;9:1843. doi: 10.3389/fmicb.2018.01843. eCollection 2018.

17.

Long-read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environments.

Heeger F, Bourne EC, Baschien C, Yurkov A, Bunk B, Spröer C, Overmann J, Mazzoni CJ, Monaghan MT.

Mol Ecol Resour. 2018 Nov;18(6):1500-1514. doi: 10.1111/1755-0998.12937. Epub 2018 Sep 23.

PMID:
30106226
18.

ATP Content and Cell Viability as Indicators for Cryostress Across the Diversity of Life.

Bajerski F, Stock J, Hanf B, Darienko T, Heine-Dobbernack E, Lorenz M, Naujox L, Keller ERJ, Schumacher HM, Friedl T, Eberth S, Mock HP, Kniemeyer O, Overmann J.

Front Physiol. 2018 Jul 17;9:921. doi: 10.3389/fphys.2018.00921. eCollection 2018.

19.

Genetic Adaptation of a Mevalonate Pathway Deficient Mutant in Staphylococcus aureus.

Reichert S, Ebner P, Bonetti EJ, Luqman A, Nega M, Schrenzel J, Spröer C, Bunk B, Overmann J, Sass P, François P, Götz F.

Front Microbiol. 2018 Jul 12;9:1539. doi: 10.3389/fmicb.2018.01539. eCollection 2018.

20.

Convergent Loss of ABC Transporter Genes From Clostridioides difficile Genomes Is Associated With Impaired Tyrosine Uptake and p-Cresol Production.

Steglich M, Hofmann JD, Helmecke J, Sikorski J, Spröer C, Riedel T, Bunk B, Overmann J, Neumann-Schaal M, Nübel U.

Front Microbiol. 2018 May 8;9:901. doi: 10.3389/fmicb.2018.00901. eCollection 2018.

21.

Vicinamibacteraceae fam. nov., the first described family within the subdivision 6 Acidobacteria.

Huber KJ, Overmann J.

Int J Syst Evol Microbiol. 2018 Jul;68(7):2331-2334. doi: 10.1099/ijsem.0.002841. Epub 2018 May 29.

PMID:
29809123
22.

Whole-genome comparison of high and low virulent Staphylococcus aureus isolates inducing implant-associated bone infections.

Mannala GK, Koettnitz J, Mohamed W, Sommer U, Lips KS, Spröer C, Bunk B, Overmann J, Hain T, Heiss C, Domann E, Alt V.

Int J Med Microbiol. 2018 Jul;308(5):505-513. doi: 10.1016/j.ijmm.2018.04.005. Epub 2018 Apr 25.

PMID:
29739668
23.

Two Groups of Cocirculating, Epidemic Clostridiodes difficile Strains Microdiversify through Different Mechanisms.

Murillo T, Ramírez-Vargas G, Riedel T, Overmann J, Andersen JM, Guzmán-Verri C, Chaves-Olarte E, Rodríguez C.

Genome Biol Evol. 2018 Mar 1;10(3):982-998. doi: 10.1093/gbe/evy059.

24.

Enterobacter bugandensis: a novel enterobacterial species associated with severe clinical infection.

Pati NB, Doijad SP, Schultze T, Mannala GK, Yao Y, Jaiswal S, Ryan D, Suar M, Gwozdzinski K, Bunk B, Mraheil MA, Marahiel MA, Hegemann JD, Spröer C, Goesmann A, Falgenhauer L, Hain T, Imirzalioglu C, Mshana SE, Overmann J, Chakraborty T.

Sci Rep. 2018 Mar 29;8(1):5392. doi: 10.1038/s41598-018-23069-z.

25.

Isoprenoid Quinones Resolve the Stratification of Redox Processes in a Biogeochemical Continuum from the Photic Zone to Deep Anoxic Sediments of the Black Sea.

Becker KW, Elling FJ, Schröder JM, Lipp JS, Goldhammer T, Zabel M, Elvert M, Overmann J, Hinrichs KU.

Appl Environ Microbiol. 2018 May 1;84(10). pii: e02736-17. doi: 10.1128/AEM.02736-17. Print 2018 May 15.

26.

Synchronous termination of replication of the two chromosomes is an evolutionary selected feature in Vibrionaceae.

Kemter FS, Messerschmidt SJ, Schallopp N, Sobetzko P, Lang E, Bunk B, Spröer C, Teschler JK, Yildiz FH, Overmann J, Waldminghaus T.

PLoS Genet. 2018 Mar 5;14(3):e1007251. doi: 10.1371/journal.pgen.1007251. eCollection 2018 Mar.

27.

Roseisolibacter agri gen. nov., sp. nov., a novel slow-growing member of the under-represented phylum Gemmatimonadetes.

Pascual J, Foesel BU, Geppert A, Huber KJ, Boedeker C, Luckner M, Wanner G, Overmann J.

Int J Syst Evol Microbiol. 2018 Apr;68(4):1028-1036. doi: 10.1099/ijsem.0.002619. Epub 2018 Feb 14.

PMID:
29458671
28.

Complete Genome Sequence of Kyrpidia sp. Strain EA-1, a Thermophilic Knallgas Bacterium, Isolated from the Azores.

Reiner JE, Lapp CJ, Bunk B, Spröer C, Overmann J, Gescher J.

Genome Announc. 2018 Jan 18;6(3). pii: e01505-17. doi: 10.1128/genomeA.01505-17.

29.

Host Specificity for Bacterial, Archaeal and Fungal Communities Determined for High- and Low-Microbial Abundance Sponge Species in Two Genera.

Chaib De Mares M, Sipkema D, Huang S, Bunk B, Overmann J, van Elsas JD.

Front Microbiol. 2017 Dec 20;8:2560. doi: 10.3389/fmicb.2017.02560. eCollection 2017.

30.

Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile.

Groß U, Brzuszkiewicz E, Gunka K, Starke J, Riedel T, Bunk B, Spröer C, Wetzel D, Poehlein A, Chibani C, Bohne W, Overmann J, Zimmermann O, Daniel R, Liesegang H.

BMC Genomics. 2018 Jan 2;19(1):1. doi: 10.1186/s12864-017-4368-0.

31.

Trajectories and Drivers of Genome Evolution in Surface-Associated Marine Phaeobacter.

Freese HM, Sikorski J, Bunk B, Scheuner C, Meier-Kolthoff JP, Spröer C, Gram L, Overmann J.

Genome Biol Evol. 2017 Dec 1;9(12):3297-3311. doi: 10.1093/gbe/evx249.

32.

Monitoring microevolution of OXA-48-producing Klebsiella pneumoniae ST147 in a hospital setting by SMRT sequencing.

Zautner AE, Bunk B, Pfeifer Y, Spröer C, Reichard U, Eiffert H, Scheithauer S, Groß U, Overmann J, Bohne W.

J Antimicrob Chemother. 2017 Oct 1;72(10):2737-2744. doi: 10.1093/jac/dkx216.

PMID:
29091199
33.

Genome and Methylome Variation in Helicobacter pylori With a cag Pathogenicity Island During Early Stages of Human Infection.

Nell S, Estibariz I, Krebes J, Bunk B, Graham DY, Overmann J, Song Y, Spröer C, Yang I, Wex T, Korlach J, Malfertheiner P, Suerbaum S.

Gastroenterology. 2018 Feb;154(3):612-623.e7. doi: 10.1053/j.gastro.2017.10.014. Epub 2017 Oct 21.

PMID:
29066327
34.

Phaeobacter piscinae sp. nov., a species of the Roseobacter group and potential aquaculture probiont.

Sonnenschein EC, Phippen CBW, Nielsen KF, Mateiu RV, Melchiorsen J, Gram L, Overmann J, Freese HM.

Int J Syst Evol Microbiol. 2017 Nov;67(11):4559-4564. doi: 10.1099/ijsem.0.002331. Epub 2017 Oct 6.

PMID:
28984543
35.

The Composite 259-kb Plasmid of Martelella mediterranea DSM 17316T-A Natural Replicon with Functional RepABC Modules from Rhodobacteraceae and Rhizobiaceae.

Bartling P, Brinkmann H, Bunk B, Overmann J, Göker M, Petersen J.

Front Microbiol. 2017 Sep 21;8:1787. doi: 10.3389/fmicb.2017.01787. eCollection 2017.

36.

The Biofilm Inhibitor Carolacton Enters Gram-Negative Cells: Studies Using a TolC-Deficient Strain of Escherichia coli.

Donner J, Reck M, Bunk B, Jarek M, App CB, Meier-Kolthoff JP, Overmann J, Müller R, Kirschning A, Wagner-Döbler I.

mSphere. 2017 Sep 27;2(5). pii: e00375-17. doi: 10.1128/mSphereDirect.00375-17. eCollection 2017 Sep-Oct.

37.

Aridibacter nitratireducens sp. nov., a member of the family Blastocatellaceae, class Blastocatellia, isolated from an African soil.

Huber KJ, Geppert AM, Groß U, Luckner M, Wanner G, Cooper P, Abakah J, Janssen I, Overmann J.

Int J Syst Evol Microbiol. 2017 Nov;67(11):4487-4493. doi: 10.1099/ijsem.0.002318. Epub 2017 Sep 25.

PMID:
28945537
38.

Adaptation of Surface-Associated Bacteria to the Open Ocean: A Genomically Distinct Subpopulation of Phaeobacter gallaeciensis Colonizes Pacific Mesozooplankton.

Freese HM, Methner A, Overmann J.

Front Microbiol. 2017 Aug 31;8:1659. doi: 10.3389/fmicb.2017.01659. eCollection 2017.

39.

Complete Genome Sequence of blaCTX-M-27-Encoding Escherichia coli Strain H105 of Sequence Type 131 Lineage C1/H30R.

Ghosh H, Bunk B, Doijad S, Schmiedel J, Falgenhauer L, Spröer C, Imirzalioglu C, Overmann J, Chakraborty T.

Genome Announc. 2017 Aug 3;5(31). pii: e00736-17. doi: 10.1128/genomeA.00736-17.

40.

Present and Future of Culturing Bacteria.

Overmann J, Abt B, Sikorski J.

Annu Rev Microbiol. 2017 Sep 8;71:711-730. doi: 10.1146/annurev-micro-090816-093449. Epub 2017 Jul 21. Review.

PMID:
28731846
41.

Phaeobacter porticola sp. nov., an antibiotic-producing bacterium isolated from a sea harbour.

Breider S, Freese HM, Spröer C, Simon M, Overmann J, Brinkhoff T.

Int J Syst Evol Microbiol. 2017 Jul;67(7):2153-2159. doi: 10.1099/ijsem.0.001879. Epub 2017 Jul 12.

PMID:
28699865
42.

Flaviaesturariibacter luteus sp. nov., isolated from an agricultural floodplain soil, and emended description of the genus Flaviaesturariibacter.

Pascual J, Foesel BU, Geppert A, Huber KJ, Overmann J.

Int J Syst Evol Microbiol. 2017 Jun;67(6):1727-1734. doi: 10.1099/ijsem.0.001854. Epub 2017 Jun 20.

PMID:
28632115
43.

Function of bacterial community dynamics in the formation of cadaveric semiochemicals during in situ carcass decomposition.

Pascual J, von Hoermann C, Rottler-Hoermann AM, Nevo O, Geppert A, Sikorski J, Huber KJ, Steiger S, Ayasse M, Overmann J.

Environ Microbiol. 2017 Aug;19(8):3310-3322. doi: 10.1111/1462-2920.13828. Epub 2017 Jul 17.

PMID:
28631411
44.

High metabolic versatility of different toxigenic and non-toxigenic Clostridioides difficile isolates.

Riedel T, Wetzel D, Hofmann JD, Plorin SPEO, Dannheim H, Berges M, Zimmermann O, Bunk B, Schober I, Spröer C, Liesegang H, Jahn D, Overmann J, Groß U, Neumann-Schaal M.

Int J Med Microbiol. 2017 Sep;307(6):311-320. doi: 10.1016/j.ijmm.2017.05.007. Epub 2017 Jun 1.

PMID:
28619474
45.

The multi-omics promise in context: from sequence to microbial isolate.

Gutleben J, Chaib De Mares M, van Elsas JD, Smidt H, Overmann J, Sipkema D.

Crit Rev Microbiol. 2018 Mar;44(2):212-229. doi: 10.1080/1040841X.2017.1332003. Epub 2017 May 31. Review.

PMID:
28562180
46.

Mobilization and integration of bacterial phenotypic data-Enabling next generation biodiversity analysis through the BacDive metadatabase.

Reimer LC, Söhngen C, Vetcininova A, Overmann J.

J Biotechnol. 2017 Nov 10;261:187-193. doi: 10.1016/j.jbiotec.2017.05.004. Epub 2017 May 6. Review.

47.

Cultured microbes represent a substantial fraction of the human and mouse gut microbiota.

Lagkouvardos I, Overmann J, Clavel T.

Gut Microbes. 2017 Sep 3;8(5):493-503. doi: 10.1080/19490976.2017.1320468. Epub 2017 Apr 18. Review.

48.

Tripartite species interaction: eukaryotic hosts suffer more from phage susceptible than from phage resistant bacteria.

Wendling CC, Piecyk A, Refardt D, Chibani C, Hertel R, Liesegang H, Bunk B, Overmann J, Roth O.

BMC Evol Biol. 2017 Apr 11;17(1):98. doi: 10.1186/s12862-017-0930-2.

49.

Manual curation and reannotation of the genomes of Clostridium difficile 630Δerm and C. difficile 630.

Dannheim H, Riedel T, Neumann-Schaal M, Bunk B, Schober I, Spröer C, Chibani CM, Gronow S, Liesegang H, Overmann J, Schomburg D.

J Med Microbiol. 2017 Mar;66(3):286-293. doi: 10.1099/jmm.0.000427.

PMID:
28357980
50.

Inferring interactions in complex microbial communities from nucleotide sequence data and environmental parameters.

Shang Y, Sikorski J, Bonkowski M, Fiore-Donno AM, Kandeler E, Marhan S, Boeddinghaus RS, Solly EF, Schrumpf M, Schöning I, Wubet T, Buscot F, Overmann J.

PLoS One. 2017 Mar 13;12(3):e0173765. doi: 10.1371/journal.pone.0173765. eCollection 2017.

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