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Items: 13

1.

Comparative proteomic study of early hypoxic response in the cerebral cortex of rats submitted to two different hypoxic models.

Ovelleiro D, Blanco S, Hernández R, Peinado MÁ.

Proteomics Clin Appl. 2017 Dec;11(11-12). doi: 10.1002/prca.201700058. Epub 2017 Aug 22.

PMID:
28697276
2.

Proteomic characterization of nitrated cell targets after hypobaric hypoxia and reoxygenation in rat brain.

Peinado MÁ, Hernández R, Peragón J, Ovelleiro D, Pedrosa JÁ, Blanco S.

J Proteomics. 2014 Sep 23;109:309-21. doi: 10.1016/j.jprot.2014.07.015. Epub 2014 Jul 23.

PMID:
25064252
3.

A collection of open source applications for mass spectrometry data mining.

Gallardo Ó, Ovelleiro D, Gay M, Carrascal M, Abian J.

Proteomics. 2014 Oct;14(20):2275-9. doi: 10.1002/pmic.201400124. Epub 2014 Sep 5.

PMID:
25055762
4.

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary.

Mayer G, Montecchi-Palazzi L, Ovelleiro D, Jones AR, Binz PA, Deutsch EW, Chambers M, Kallhardt M, Levander F, Shofstahl J, Orchard S, Vizcaíno JA, Hermjakob H, Stephan C, Meyer HE, Eisenacher M; HUPO-PSI Group.

Database (Oxford). 2013 Mar 12;2013:bat009. doi: 10.1093/database/bat009. Print 2013.

5.

The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013.

Vizcaíno JA, Côté RG, Csordas A, Dianes JA, Fabregat A, Foster JM, Griss J, Alpi E, Birim M, Contell J, O'Kelly G, Schoenegger A, Ovelleiro D, Pérez-Riverol Y, Reisinger F, Ríos D, Wang R, Hermjakob H.

Nucleic Acids Res. 2013 Jan;41(Database issue):D1063-9. doi: 10.1093/nar/gks1262. Epub 2012 Nov 29.

6.

The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium.

Côté RG, Griss J, Dianes JA, Wang R, Wright JC, van den Toorn HW, van Breukelen B, Heck AJ, Hulstaert N, Martens L, Reisinger F, Csordas A, Ovelleiro D, Perez-Rivevol Y, Barsnes H, Hermjakob H, Vizcaíno JA.

Mol Cell Proteomics. 2012 Dec;11(12):1682-9. doi: 10.1074/mcp.O112.021543. Epub 2012 Sep 4.

7.

PRIDE: quality control in a proteomics data repository.

Csordas A, Ovelleiro D, Wang R, Foster JM, Ríos D, Vizcaíno JA, Hermjakob H.

Database (Oxford). 2012 Mar 20;2012:bas004. doi: 10.1093/database/bas004. Print 2012.

8.

PRIDE Inspector: a tool to visualize and validate MS proteomics data.

Wang R, Fabregat A, Ríos D, Ovelleiro D, Foster JM, Côté RG, Griss J, Csordas A, Perez-Riverol Y, Reisinger F, Hermjakob H, Martens L, Vizcaíno JA.

Nat Biotechnol. 2012 Feb 8;30(2):135-7. doi: 10.1038/nbt.2112. No abstract available.

9.

TraML--a standard format for exchange of selected reaction monitoring transition lists.

Deutsch EW, Chambers M, Neumann S, Levander F, Binz PA, Shofstahl J, Campbell DS, Mendoza L, Ovelleiro D, Helsens K, Martens L, Aebersold R, Moritz RL, Brusniak MY.

Mol Cell Proteomics. 2012 Apr;11(4):R111.015040. doi: 10.1074/mcp.R111.015040. Epub 2011 Dec 12.

10.

Critical amino acid residues in proteins: a BioMart integration of Reactome protein annotations with PRIDE mass spectrometry data and COSMIC somatic mutations.

Ndegwa N, Côté RG, Ovelleiro D, D'Eustachio P, Hermjakob H, Vizcaíno JA, Croft D.

Database (Oxford). 2011 Oct 23;2011:bar047. doi: 10.1093/database/bar047. Print 2011.

11.

Characterization of the human plasma phosphoproteome using linear ion trap mass spectrometry and multiple search engines.

Carrascal M, Gay M, Ovelleiro D, Casas V, Gelpí E, Abian J.

J Proteome Res. 2010 Feb 5;9(2):876-84. doi: 10.1021/pr900780s.

PMID:
19941383
12.

LymPHOS: design of a phosphosite database of primary human T cells.

Ovelleiro D, Carrascal M, Casas V, Abian J.

Proteomics. 2009 Jul;9(14):3741-51. doi: 10.1002/pmic.200800701.

PMID:
19639593
13.

Phosphorylation analysis of primary human T lymphocytes using sequential IMAC and titanium oxide enrichment.

Carrascal M, Ovelleiro D, Casas V, Gay M, Abian J.

J Proteome Res. 2008 Dec;7(12):5167-76.

PMID:
19367720

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