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Items: 1 to 50 of 192

1.

Clinical and Prognostic Significance of Cell Sensitivity to Chemotherapy Detected in vitro on Treatment Response and Survival of Leukemia Patients.

Kolesnikova M, Sen'kova A, Tairova S, Ovchinnikov V, Pospelova T, Zenkova M.

J Pers Med. 2019 May 7;9(2). pii: E24. doi: 10.3390/jpm9020024.

2.

Exploration of extracellular vesicles from Ascaris suum provides evidence of parasite-host cross talk.

Hansen EP, Fromm B, Andersen SD, Marcilla A, Andersen KL, Borup A, Williams AR, Jex AR, Gasser RB, Young ND, Hall RS, Stensballe A, Ovchinnikov V, Yan Y, Fredholm M, Thamsborg SM, Nejsum P.

J Extracell Vesicles. 2019 Feb 14;8(1):1578116. doi: 10.1080/20013078.2019.1578116. eCollection 2019.

3.

Expression of the miR-190 family is increased under DDT exposure in vivo and in vitro.

Kalinina TS, Kononchuk VV, Ovchinnikov VY, Chanyshev MD, Gulyaeva LF.

Mol Biol Rep. 2018 Dec;45(6):1937-1945. doi: 10.1007/s11033-018-4343-0. Epub 2018 Nov 12.

PMID:
30421125
4.

Expression of microRNA Potentially Regulated by AhR and CAR in Malignant Tumors of the Endometrium.

Ushakov DS, Dorozhkova AS, Babayants EV, Ovchinnikov VY, Kushlinskii DN, Adamyan LV, Gulyaeva LF, Kushlinskii NE.

Bull Exp Biol Med. 2018 Sep;165(5):688-691. doi: 10.1007/s10517-018-4242-3. Epub 2018 Sep 17.

PMID:
30225717
5.

Cytosolic expression, solution structures, and molecular dynamics simulation of genetically encodable disulfide-rich de novo designed peptides.

Buchko GW, Pulavarti SVSRK, Ovchinnikov V, Shaw EA, Rettie SA, Myler PJ, Karplus M, Szyperski T, Baker D, Bahl CD.

Protein Sci. 2018 Sep;27(9):1611-1623. doi: 10.1002/pro.3453.

6.

MiR-21 regulates the ACAT1 gene in MCF-7 cells.

Chanyshev MD, Razumova YV, Ovchinnikov VY, Gulyaeva LF.

Life Sci. 2018 Sep 15;209:173-178. doi: 10.1016/j.lfs.2018.08.010. Epub 2018 Aug 6.

PMID:
30092298
7.

Structure of the EmrE multidrug transporter and its use for inhibitor peptide design.

Ovchinnikov V, Stone TA, Deber CM, Karplus M.

Proc Natl Acad Sci U S A. 2018 Aug 21;115(34):E7932-E7941. doi: 10.1073/pnas.1802177115. Epub 2018 Aug 6.

8.

Role of framework mutations and antibody flexibility in the evolution of broadly neutralizing antibodies.

Ovchinnikov V, Louveau JE, Barton JP, Karplus M, Chakraborty AK.

Elife. 2018 Feb 14;7. pii: e33038. doi: 10.7554/eLife.33038.

9.

The search of CAR, AhR, ESRs binding sites in promoters of intronic and intergenic microRNAs.

Ovchinnikov VY, Antonets DV, Gulyaeva LF.

J Bioinform Comput Biol. 2018 Feb;16(1):1750029. doi: 10.1142/S0219720017500299. Epub 2017 Dec 10.

PMID:
29301444
10.

Extreme conservation of miRNA complements in opisthorchiids.

Ovchinnikov VY, Mordvinov VA, Fromm B.

Parasitol Int. 2017 Dec;66(6):773-776. doi: 10.1016/j.parint.2017.09.006. Epub 2017 Sep 12.

PMID:
28916307
11.

Coexisting origins of subdiffusion in internal dynamics of proteins.

Meroz Y, Ovchinnikov V, Karplus M.

Phys Rev E. 2017 Jun;95(6-1):062403. doi: 10.1103/PhysRevE.95.062403. Epub 2017 Jun 6.

PMID:
28709262
12.

Relation between molecular electronic structure and nuclear spin-induced circular dichroism.

Štěpánek P, Coriani S, Sundholm D, Ovchinnikov VA, Vaara J.

Sci Rep. 2017 Apr 24;7:46617. doi: 10.1038/srep46617.

13.

Regulation and Plasticity of Catalysis in Enzymes: Insights from Analysis of Mechanochemical Coupling in Myosin.

Lu X, Ovchinnikov V, Demapan D, Roston D, Cui Q.

Biochemistry. 2017 Mar 14;56(10):1482-1497. doi: 10.1021/acs.biochem.7b00016. Epub 2017 Mar 1.

14.

On the presence and immunoregulatory functions of extracellular microRNAs in the trematode Fasciola hepatica.

Fromm B, Ovchinnikov V, Høye E, Bernal D, Hackenberg M, Marcilla A.

Parasite Immunol. 2017 Feb;39(2). doi: 10.1111/pim.12399. Review.

15.

[Parameters of ocular hydrodynamics in case of major neck blood vessels compression by thyroid nodules].

Smetankin IG, Agarkova DI, Ovchinnikov VA, Lankina AA, Ovchinnikov EA.

Vestn Oftalmol. 2016 Jul-Aug;132(4):20-23. doi: 10.17116/oftalma2016132420-23. Russian.

PMID:
27600890
16.

QM/MM free energy simulations: recent progress and challenges.

Lu X, Fang D, Ito S, Okamoto Y, Ovchinnikov V, Cui Q.

Mol Simul. 2016;42(13):1056-1078. Epub 2016 Jul 5.

17.

Comparative efficiency analysis of fiber-array and conventional beam director systems in volume turbulence.

Vorontsov M, Filimonov G, Ovchinnikov V, Polnau E, Lachinova S, Weyrauch T, Mangano J.

Appl Opt. 2016 May 20;55(15):4170-85. doi: 10.1364/AO.55.004170.

PMID:
27411147
18.

A Simple and Accurate Method To Calculate Free Energy Profiles and Reaction Rates from Restrained Molecular Simulations of Diffusive Processes.

Ovchinnikov V, Nam K, Karplus M.

J Phys Chem B. 2016 Aug 25;120(33):8457-72. doi: 10.1021/acs.jpcb.6b02139. Epub 2016 May 26.

PMID:
27135391
19.

[Computed tomography in diagnostics of extravasal influence of thyroid nodules].

Ovchinnikov VA, Ovchinnikov EA.

Khirurgiia (Mosk). 2016;(1):20-24. doi: 10.17116/hirurgia2016120-24. Russian.

PMID:
26977606
20.

Deep turbulence effects mitigation with coherent combining of 21 laser beams over 7 km.

Weyrauch T, Vorontsov M, Mangano J, Ovchinnikov V, Bricker D, Polnau E, Rostov A.

Opt Lett. 2016 Feb 15;41(4):840-3. doi: 10.1364/OL.41.000840.

PMID:
26872202
21.

Role of Protein Dynamics in Allosteric Control of the Catalytic Phosphoryl Transfer of Insulin Receptor Kinase.

Ojeda-May P, Li Y, Ovchinnikov V, Nam K.

J Am Chem Soc. 2015 Oct 7;137(39):12454-7. doi: 10.1021/jacs.5b07996. Epub 2015 Sep 23.

PMID:
26374925
22.

Identification of microRNA genes in three opisthorchiids.

Ovchinnikov VY, Afonnikov DA, Vasiliev GV, Kashina EV, Sripa B, Mordvinov VA, Katokhin AV.

PLoS Negl Trop Dis. 2015 Apr 21;9(4):e0003680. doi: 10.1371/journal.pntd.0003680. eCollection 2015 Apr.

23.

Carbon nanotube network varactor.

Generalov AA, Anoshkin IV, Erdmanis M, Lioubtchenko DV, Ovchinnikov V, Nasibulin AG, Räisänen AV.

Nanotechnology. 2015 Jan 30;26(4):045201. doi: 10.1088/0957-4484/26/4/045201. Epub 2015 Jan 5.

PMID:
25556375
24.

Focused ion beam lithography for fabrication of suspended nanostructures on highly corrugated surfaces.

Erdmanis M, Sievilä P, Shah A, Chekurov N, Ovchinnikov V, Tittonen I.

Nanotechnology. 2014 Aug 22;25(33):335302. doi: 10.1088/0957-4484/25/33/335302. Epub 2014 Jul 30.

PMID:
25074238
25.

Role of polymorphic loci in HLA-region rs2647012 and rs805288 in the development of non-Hodgkin's malignant lymphomas in Western Siberia.

Weiner AS, Berezina OV, Ovchinnikov VS, Surovtseva MN, Voropaeva EN, Pospelova TI, Filipenko ML.

Bull Exp Biol Med. 2014 Jun;157(2):180-3. doi: 10.1007/s10517-014-2520-2. Epub 2014 Jun 24.

PMID:
24958370
26.

Analysis of the association of polymorphic loci rs917997 in IL18RAP gene and rs187238 in IL18 gene with the risk for non-Hodgkin's malignant lymphomas in Novosibirsk population.

Surovtseva MN, Vainer AS, Berezina OV, Ovchinnikov VS, Voropaeva EN, Pospelova TI, Filipenko ML.

Bull Exp Biol Med. 2014 May;157(1):66-9. doi: 10.1007/s10517-014-2493-1. Epub 2014 Jun 10.

PMID:
24909718
27.

Investigations of α-helix↔β-sheet transition pathways in a miniprotein using the finite-temperature string method.

Ovchinnikov V, Karplus M.

J Chem Phys. 2014 May 7;140(17):175103. doi: 10.1063/1.4871685.

28.

Coupled-cluster and density functional theory studies of the electronic 0-0 transitions of the DNA bases.

Ovchinnikov VA, Sundholm D.

Phys Chem Chem Phys. 2014 Apr 21;16(15):6931-41. doi: 10.1039/c3cp55080j. Epub 2014 Mar 5.

PMID:
24595333
29.

Effects of preplasma scale length and laser intensity on the divergence of laser-generated hot electrons.

Ovchinnikov VM, Schumacher DW, McMahon M, Chowdhury EA, Chen CD, Morace A, Freeman RR.

Phys Rev Lett. 2013 Feb 8;110(6):065007. Epub 2013 Feb 8.

PMID:
23432266
30.

A simplified confinement method for calculating absolute free energies and free energy and entropy differences.

Ovchinnikov V, Cecchini M, Karplus M.

J Phys Chem B. 2013 Jan 24;117(3):750-62. doi: 10.1021/jp3080578. Epub 2013 Jan 10.

31.

[The long-term follow-up results of the giant peptic gastric ulcer treatment].

Ovchinnikov VA, Zakharov AG, Shubin BV, Goshadze KA.

Khirurgiia (Mosk). 2012;(10):54-5. Russian. No abstract available.

PMID:
23235381
32.

Hibernating myocardium results in partial sympathetic denervation and nerve sprouting.

Fernandez SF, Ovchinnikov V, Canty JM Jr, Fallavollita JA.

Am J Physiol Heart Circ Physiol. 2013 Jan 15;304(2):H318-27. doi: 10.1152/ajpheart.00810.2011. Epub 2012 Nov 2.

33.

Time dependence of fast electron beam divergence in ultraintense laser-plasma interactions.

Akli KU, Storm MJ, McMahon M, Jiang S, Ovchinnikov V, Schumacher DW, Freeman RR, Dyer G, Ditmire T.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Aug;86(2 Pt 2):026404. Epub 2012 Aug 14.

PMID:
23005866
34.

Analysis and elimination of a bias in targeted molecular dynamics simulations of conformational transitions: application to calmodulin.

Ovchinnikov V, Karplus M.

J Phys Chem B. 2012 Jul 26;116(29):8584-603. doi: 10.1021/jp212634z. Epub 2012 Mar 28.

35.

A conformational transition in the myosin VI converter contributes to the variable step size.

Ovchinnikov V, Cecchini M, Vanden-Eijnden E, Karplus M.

Biophys J. 2011 Nov 16;101(10):2436-44. doi: 10.1016/j.bpj.2011.09.044. Epub 2011 Nov 15.

36.

Optical interference lithography using azobenzene-functionalized polymers for micro- and nanopatterning of silicon.

Kravchenko A, Shevchenko A, Ovchinnikov V, Priimagi A, Kaivola M.

Adv Mater. 2011 Sep 22;23(36):4174-7. doi: 10.1002/adma.201101888. Epub 2011 Aug 8. No abstract available.

PMID:
21823180
37.

Free energy of conformational transition paths in biomolecules: the string method and its application to myosin VI.

Ovchinnikov V, Karplus M, Vanden-Eijnden E.

J Chem Phys. 2011 Feb 28;134(8):085103. doi: 10.1063/1.3544209.

38.

[Successful treatment of gigantic extragenital endametrioid cyst with ingrowth into the duodenum and pancreas].

Ovchinnikov VA, Kholodenin KG, Goshadze KA.

Vestn Khir Im I I Grek. 2011;170(6):78-9. Russian. No abstract available.

PMID:
22416415
39.

Limitation on prepulse level for cone-guided fast-ignition inertial confinement fusion.

Macphee AG, Divol L, Kemp AJ, Akli KU, Beg FN, Chen CD, Chen H, Hey DS, Fedosejevs RJ, Freeman RR, Henesian M, Key MH, Le Pape S, Link A, Ma T, Mackinnon AJ, Ovchinnikov VM, Patel PK, Phillips TW, Stephens RB, Tabak M, Town R, Tsui YY, Van Woerkom LD, Wei MS, Wilks SC.

Phys Rev Lett. 2010 Feb 5;104(5):055002. Epub 2010 Feb 4.

PMID:
20366771
40.

Mechanical coupling in myosin V: a simulation study.

Ovchinnikov V, Trout BL, Karplus M.

J Mol Biol. 2010 Jan 29;395(4):815-33. doi: 10.1016/j.jmb.2009.10.029. Epub 2009 Oct 21.

41.

[Gastrointestinal stromal tumors].

Ovchinnikov VA, Abelevich AI, Volodin AN, Artifeksova AA, Kuznetsov SS.

Khirurgiia (Mosk). 2009;(7):63-5. Russian. No abstract available.

PMID:
19806682
42.

Morphology and surface plasmon resonances of silver nanocomposite layer-by-layer films.

Ovchinnikov V, Shevchenko A.

J Nanosci Nanotechnol. 2009 Jun;9(6):3872-6.

PMID:
19504934
43.

CHARMM: the biomolecular simulation program.

Brooks BR, Brooks CL 3rd, Mackerell AD Jr, Nilsson L, Petrella RJ, Roux B, Won Y, Archontis G, Bartels C, Boresch S, Caflisch A, Caves L, Cui Q, Dinner AR, Feig M, Fischer S, Gao J, Hodoscek M, Im W, Kuczera K, Lazaridis T, Ma J, Ovchinnikov V, Paci E, Pastor RW, Post CB, Pu JZ, Schaefer M, Tidor B, Venable RM, Woodcock HL, Wu X, Yang W, York DM, Karplus M.

J Comput Chem. 2009 Jul 30;30(10):1545-614. doi: 10.1002/jcc.21287. Review.

44.

Diagnostics for fast ignition science (invited).

MacPhee AG, Akli KU, Beg FN, Chen CD, Chen H, Clarke R, Hey DS, Freeman RR, Kemp AJ, Key MH, King JA, Le Pape S, Link A, Ma TY, Nakamura H, Offermann DT, Ovchinnikov VM, Patel PK, Phillips TW, Stephens RB, Town R, Tsui YY, Wei MS, Van Woerkom LD, Mackinnon AJ.

Rev Sci Instrum. 2008 Oct;79(10):10F302. doi: 10.1063/1.2978199.

PMID:
19044615
45.

Electron heated target temperature measurements in petawatt laser experiments based on extreme ultraviolet imaging and spectroscopy.

Ma T, Beg FN, MacPhee AG, Chung HK, Key MH, Mackinnon AJ, Patel PK, Hatchett S, Akli KU, Stephens RB, Chen CD, Freeman RR, Link A, Offermann DT, Ovchinnikov V, Van Woerkom LD.

Rev Sci Instrum. 2008 Oct;79(10):10E312. doi: 10.1063/1.2965260.

PMID:
19044474
46.

Determination of electron-heated temperatures of petawatt laser-irradiated foil targets with 256 and 68 eV extreme ultraviolet imaging.

Ma T, MacPhee AG, Key MH, Hatchett SP, Akli KU, Barbee TW, Chen CD, Freeman RR, King JA, Link A, Mackinnon AJ, Offermann DT, Ovchinnikov V, Patel PK, Stephens RB, Van Woerkom LD, Zhang B, Beg FN.

Rev Sci Instrum. 2008 Sep;79(9):093507. doi: 10.1063/1.2987683.

PMID:
19044413
47.

Effect of laser intensity on fast-electron-beam divergence in solid-density plasmas.

Green JS, Ovchinnikov VM, Evans RG, Akli KU, Azechi H, Beg FN, Bellei C, Freeman RR, Habara H, Heathcote R, Key MH, King JA, Lancaster KL, Lopes NC, Ma T, MacKinnon AJ, Markey K, McPhee A, Najmudin Z, Nilson P, Onofrei R, Stephens R, Takeda K, Tanaka KA, Theobald W, Tanimoto T, Waugh J, Van Woerkom L, Woolsey NC, Zepf M, Davies JR, Norreys PA.

Phys Rev Lett. 2008 Jan 11;100(1):015003. Epub 2008 Jan 11. Erratum in: Phys Rev Lett. 2008 Jan 25;100(3):039902.

PMID:
18232779
48.

[Pancreanecrosis complicated by numerous intestinal fistulas].

Bazaev AV, Ovchinnikov VA, Zakharov AG, Glukhareva IV.

Vestn Khir Im I I Grek. 2005;164(5):94-5. Russian. No abstract available.

PMID:
16768351
49.

[Results of combined surgeries for cancer of the colon complicated with stomach and duodenal fistulas].

Ovchinnikov VA, Solov'ev VA, Zagaĭnov VE, Larin AA, Shubin BV, Semenov VB, Goshadze KA.

Khirurgiia (Mosk). 2006;(4):58-62. Russian.

PMID:
16710226
50.

[Combined regional anesthesia of the lower extremities in children with cerebral paralysis].

Aĭzenberg VL, Kontakevich MM, Diordiev AV, Ovchinnikov VI.

Anesteziol Reanimatol. 2006 Jan-Feb;(1):11-3. Russian.

PMID:
16613035

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