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Items: 1 to 50 of 106

1.

Dynamics of a host-parasitoid interaction clarified by modelling and DNA sequencing.

Mutanen M, Ovaskainen O, Várkonyi G, Itämies J, Prosser SWJ, Hebert PDN, Hanski I.

Ecol Lett. 2020 Mar 23. doi: 10.1111/ele.13486. [Epub ahead of print]

PMID:
32207239
2.

Joint species distribution modelling with the r-package Hmsc.

Tikhonov G, Opedal ØH, Abrego N, Lehikoinen A, de Jonge MMJ, Oksanen J, Ovaskainen O.

Methods Ecol Evol. 2020 Mar;11(3):442-447. doi: 10.1111/2041-210X.13345. Epub 2020 Jan 23.

3.

Chronicles of nature calendar, a long-term and large-scale multitaxon database on phenology.

Ovaskainen O, Meyke E, Lo C, Tikhonov G, Delgado MDM, Roslin T, Gurarie E, Abadonova M, Abduraimov O, Adrianova O, Akimova T, Akkiev M, Ananin A, Andreeva E, Andriychuk N, Antipin M, Arzamascev K, Babina S, Babushkin M, Bakin O, Barabancova A, Basilskaja I, Belova N, Belyaeva N, Bespalova T, Bisikalova E, Bobretsov A, Bobrov V, Bobrovskyi V, Bochkareva E, Bogdanov G, Bolshakov V, Bondarchuk S, Bukharova E, Butunina A, Buyvolov Y, Buyvolova A, Bykov Y, Chakhireva E, Chashchina O, Cherenkova N, Chistjakov S, Chuhontseva S, Davydov EA, Demchenko V, Diadicheva E, Dobrolyubov A, Dostoyevskaya L, Drovnina S, Drozdova Z, Dubanaev A, Dubrovsky Y, Elsukov S, Epova L, Ermakova OS, Ermakova O, Esengeldenova A, Evstigneev O, Fedchenko I, Fedotova V, Filatova T, Gashev S, Gavrilov A, Gaydysh I, Golovcov D, Goncharova N, Gorbunova E, Gordeeva T, Grishchenko V, Gromyko L, Hohryakov V, Hritankov A, Ignatenko E, Igosheva S, Ivanova U, Ivanova N, Kalinkin Y, Kaygorodova E, Kazansky F, Kiseleva D, Knorre A, Kolpashikov L, Korobov E, Korolyova H, Korotkikh N, Kosenkov G, Kossenko S, Kotlugalyamova E, Kozlovsky E, Kozsheechkin V, Kozurak A, Kozyr I, Krasnopevtseva A, Kruglikov S, Kuberskaya O, Kudryavtsev A, Kulebyakina E, Kulsha Y, Kupriyanova M, Kurbanbagamaev M, Kutenkov A, Kutenkova N, Kuyantseva N, Kuznetsov A, Larin E, Lebedev P, Litvinov K, Luzhkova N, Mahmudov A, Makovkina L, Mamontov V, Mayorova S, Megalinskaja I, Meydus A, Minin A, Mitrofanov O, Motruk M, Myslenkov A, Nasonova N, Nemtseva N, Nesterova I, Nezdoliy T, Niroda T, Novikova T, Panicheva D, Pavlov A, Pavlova K, Petrenko P, Podolski S, Polikarpova N, Polyanskaya T, Pospelov I, Pospelova E, Prokhorov I, Prokosheva I, Puchnina L, Putrashyk I, Raiskaya J, Rozhkov Y, Rozhkova O, Rudenko M, Rybnikova I, Rykova S, Sahnevich M, Samoylov A, Sanko V, Sapelnikova I, Sazonov S, Selyunina Z, Shalaeva K, Shashkov M, Shcherbakov A, Shevchyk V, Shubin S, Shujskaja E, Sibgatullin R, Sikkila N, Sitnikova E, Sivkov A, Skok N, Skorokhodova S, Smirnova E, Sokolova G, Sopin V, Spasovski Y, Stepanov S, Stratiy V, Strekalovskaya V, Sukhov A, Suleymanova G, Sultangareeva L, Teleganova V, Teplov V, Teplova V, Tertitsa T, Timoshkin V, Tirski D, Tolmachev A, Tomilin A, Tselishcheva L, Turgunov M, Tyukh Y, Vladimir V, Vargot E, Vasin A, Vasina A, Vekliuk A, Vetchinnikova L, Vinogradov V, Volodchenkov N, Voloshina I, Xoliqov T, Yablonovska-Grishchenko E, Yakovlev V, Yakovleva M, Yantser O, Yarema Y, Zahvatov A, Zakharov V, Zelenetskiy N, Zheltukhin A, Zubina T, Kurhinen J.

Sci Data. 2020 Feb 11;7(1):47. doi: 10.1038/s41597-020-0376-z.

4.

Habitat fragmentation and species diversity in competitive communities.

Rybicki J, Abrego N, Ovaskainen O.

Ecol Lett. 2020 Mar;23(3):506-517. doi: 10.1111/ele.13450. Epub 2019 Dec 20.

5.

Common gardens in teosintes reveal the establishment of a syndrome of adaptation to altitude.

Fustier MA, Martínez-Ainsworth NE, Aguirre-Liguori JA, Venon A, Corti H, Rousselet A, Dumas F, Dittberner H, Camarena MG, Grimanelli D, Ovaskainen O, Falque M, Moreau L, de Meaux J, Montes-Hernández S, Eguiarte LE, Vigouroux Y, Manicacci D, Tenaillon MI.

PLoS Genet. 2019 Dec 20;15(12):e1008512. doi: 10.1371/journal.pgen.1008512. eCollection 2019 Dec.

6.

Computationally efficient joint species distribution modeling of big spatial data.

Tikhonov G, Duan L, Abrego N, Newell G, White M, Dunson D, Ovaskainen O.

Ecology. 2020 Feb;101(2):e02929. doi: 10.1002/ecy.2929. Epub 2019 Dec 20.

7.

The relative importance of local and regional processes to metapopulation dynamics.

Dallas TA, Saastamoinen M, Schulz T, Ovaskainen O.

J Anim Ecol. 2020 Mar;89(3):884-896. doi: 10.1111/1365-2656.13141. Epub 2019 Dec 2.

PMID:
31705670
8.

A unified framework for analysis of individual-based models in ecology and beyond.

Cornell SJ, Suprunenko YF, Finkelshtein D, Somervuo P, Ovaskainen O.

Nat Commun. 2019 Oct 17;10(1):4716. doi: 10.1038/s41467-019-12172-y.

9.

Detecting parasite associations within multi-species host and parasite communities.

Dallas TA, Laine AL, Ovaskainen O.

Proc Biol Sci. 2019 Oct 9;286(1912):20191109. doi: 10.1098/rspb.2019.1109. Epub 2019 Oct 2.

PMID:
31575371
10.

The microbiome of the Melitaea cinxia butterfly shows marked variation but is only little explained by the traits of the butterfly or its host plant.

Minard G, Tikhonov G, Ovaskainen O, Saastamoinen M.

Environ Microbiol. 2019 Nov;21(11):4253-4269. doi: 10.1111/1462-2920.14786. Epub 2019 Sep 9.

11.

SPIKEPIPE: A metagenomic pipeline for the accurate quantification of eukaryotic species occurrences and intraspecific abundance change using DNA barcodes or mitogenomes.

Ji Y, Huotari T, Roslin T, Schmidt NM, Wang J, Yu DW, Ovaskainen O.

Mol Ecol Resour. 2020 Jan;20(1):256-267. doi: 10.1111/1755-0998.13057. Epub 2019 Aug 7.

PMID:
31293086
12.

Adaptation to local climate in multi-trait space: evidence from silver fir (Abies alba Mill.) populations across a heterogeneous environment.

Csilléry K, Ovaskainen O, Sperisen C, Buchmann N, Widmer A, Gugerli F.

Heredity (Edinb). 2020 Jan;124(1):77-92. doi: 10.1038/s41437-019-0240-0. Epub 2019 Jun 10.

PMID:
31182819
13.

Scaling up the effects of inbreeding depression from individuals to metapopulations.

Nonaka E, Sirén J, Somervuo P, Ruokolainen L, Ovaskainen O, Hanski I.

J Anim Ecol. 2019 Aug;88(8):1202-1214. doi: 10.1111/1365-2656.13011. Epub 2019 Jun 26.

PMID:
31077598
14.

Joint species movement modeling: how do traits influence movements?

Ovaskainen O, Ramos DL, Slade EM, Merckx T, Tikhonov G, Pennanen J, Pizo MA, Ribeiro MC, Morales JM.

Ecology. 2019 Apr;100(4):e02622. doi: 10.1002/ecy.2622. Epub 2019 Feb 21.

15.

Estimating interaction credit for trophic rewilding in tropical forests.

Marjakangas EL, Genes L, Pires MM, Fernandez FAS, de Lima RAF, de Oliveira AA, Ovaskainen O, Pires AS, Prado PI, Galetti M.

Philos Trans R Soc Lond B Biol Sci. 2018 Oct 22;373(1761). pii: 20170435. doi: 10.1098/rstb.2017.0435.

16.

Estimating seed and pollen dispersal kernels from genetic data demonstrates a high pollen dispersal capacity for an endangered palm species.

Santos JD, Varassin IG, Muschner VC, Ovaskainen O.

Am J Bot. 2018 Nov;105(11):1802-1812. doi: 10.1002/ajb2.1176. Epub 2018 Oct 22.

17.

Soil fertility in boreal forest relates to root-driven nitrogen retention and carbon sequestration in the mor layer.

Kyaschenko J, Ovaskainen O, Ekblad A, Hagenbo A, Karltun E, Clemmensen KE, Lindahl BD.

New Phytol. 2019 Feb;221(3):1492-1502. doi: 10.1111/nph.15454. Epub 2018 Oct 3.

18.

Responses of generalist and specialist species to fragmented landscapes.

Ramiadantsoa T, Hanski I, Ovaskainen O.

Theor Popul Biol. 2018 Dec;124:31-40. doi: 10.1016/j.tpb.2018.08.001. Epub 2018 Aug 16.

PMID:
30121328
19.

Protax-fungi: a web-based tool for probabilistic taxonomic placement of fungal internal transcribed spacer sequences.

Abarenkov K, Somervuo P, Nilsson RH, Kirk PM, Huotari T, Abrego N, Ovaskainen O.

New Phytol. 2018 Oct;220(2):517-525. doi: 10.1111/nph.15301. Epub 2018 Jul 23.

20.

Animal Sound Identifier (ASI): software for automated identification of vocal animals.

Ovaskainen O, Moliterno de Camargo U, Somervuo P.

Ecol Lett. 2018 Aug;21(8):1244-1254. doi: 10.1111/ele.13092. Epub 2018 Jun 25.

PMID:
29938881
21.

Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures.

Lammel DR, Barth G, Ovaskainen O, Cruz LM, Zanatta JA, Ryo M, de Souza EM, Pedrosa FO.

Microbiome. 2018 Jun 11;6(1):106. doi: 10.1186/s40168-018-0482-8.

22.

Habitat quality is more important than matrix quality for bird communities in protected areas.

Häkkilä M, Abrego N, Ovaskainen O, Mönkkönen M.

Ecol Evol. 2018 Mar 25;8(8):4019-4030. doi: 10.1002/ece3.3923. eCollection 2018 Apr.

23.

Secondary forest regeneration benefits old-growth specialist bats in a fragmented tropical landscape.

Rocha R, Ovaskainen O, López-Baucells A, Farneda FZ, Sampaio EM, Bobrowiec PED, Cabeza M, Palmeirim JM, Meyer CFJ.

Sci Rep. 2018 Feb 28;8(1):3819. doi: 10.1038/s41598-018-21999-2.

24.

Give me a sample of air and I will tell which species are found from your region: Molecular identification of fungi from airborne spore samples.

Abrego N, Norros V, Halme P, Somervuo P, Ali-Kovero H, Ovaskainen O.

Mol Ecol Resour. 2018 May;18(3):511-524. doi: 10.1111/1755-0998.12755. Epub 2018 Feb 2.

PMID:
29330936
25.

PROTAX-Sound: A probabilistic framework for automated animal sound identification.

de Camargo UM, Somervuo P, Ovaskainen O.

PLoS One. 2017 Sep 1;12(9):e0184048. doi: 10.1371/journal.pone.0184048. eCollection 2017.

26.

Connecting Earth observation to high-throughput biodiversity data.

Bush A, Sollmann R, Wilting A, Bohmann K, Cole B, Balzter H, Martius C, Zlinszky A, Calvignac-Spencer S, Cobbold CA, Dawson TP, Emerson BC, Ferrier S, Gilbert MTP, Herold M, Jones L, Leendertz FH, Matthews L, Millington JDA, Olson JR, Ovaskainen O, Raffaelli D, Reeve R, Rödel MO, Rodgers TW, Snape S, Visseren-Hamakers I, Vogler AP, White PCL, Wooster MJ, Yu DW.

Nat Ecol Evol. 2017 Jun 22;1(7):176. doi: 10.1038/s41559-017-0176.

27.

Discovery of long-distance gamete dispersal in a lichen-forming ascomycete.

Ronnås C, Werth S, Ovaskainen O, Várkonyi G, Scheidegger C, Snäll T.

New Phytol. 2017 Oct;216(1):216-226. doi: 10.1111/nph.14714. Epub 2017 Aug 7.

28.

Structure and stability of genetic variance-covariance matrices: A Bayesian sparse factor analysis of transcriptional variation in the three-spined stickleback.

Siren J, Ovaskainen O, Merilä J.

Mol Ecol. 2017 Oct;26(19):5099-5113. doi: 10.1111/mec.14265. Epub 2017 Aug 21.

PMID:
28746754
29.

How are species interactions structured in species-rich communities? A new method for analysing time-series data.

Ovaskainen O, Tikhonov G, Dunson D, Grøtan V, Engen S, Sæther BE, Abrego N.

Proc Biol Sci. 2017 May 31;284(1855). pii: 20170768. doi: 10.1098/rspb.2017.0768.

30.

A numerical approach to determine mutant invasion fitness and evolutionary singular strategies.

Fritsch C, Campillo F, Ovaskainen O.

Theor Popul Biol. 2017 Jun;115:89-99. doi: 10.1016/j.tpb.2017.05.001. Epub 2017 May 10.

PMID:
28499906
31.

Correlated velocity models as a fundamental unit of animal movement: synthesis and applications.

Gurarie E, Fleming CH, Fagan WF, Laidre KL, Hernández-Pliego J, Ovaskainen O.

Mov Ecol. 2017 May 10;5:13. doi: 10.1186/s40462-017-0103-3. eCollection 2017.

32.

Interactions between soil- and dead wood-inhabiting fungal communities during the decay of Norway spruce logs.

Mäkipää R, Rajala T, Schigel D, Rinne KT, Pennanen T, Abrego N, Ovaskainen O.

ISME J. 2017 Sep;11(9):1964-1974. doi: 10.1038/ismej.2017.57. Epub 2017 Apr 21.

33.

How to make more out of community data? A conceptual framework and its implementation as models and software.

Ovaskainen O, Tikhonov G, Norberg A, Guillaume Blanchet F, Duan L, Dunson D, Roslin T, Abrego N.

Ecol Lett. 2017 May;20(5):561-576. doi: 10.1111/ele.12757. Epub 2017 Mar 20.

PMID:
28317296
34.

Atlantic frugivory: a plant-frugivore interaction data set for the Atlantic Forest.

Bello C, Galetti M, Montan D, Pizo MA, Mariguela TC, Culot L, Bufalo F, Labecca F, Pedrosa F, Constantini R, Emer C, Silva WR, da Silva FR, Ovaskainen O, Jordano P.

Ecology. 2017 Jun;98(6):1729. doi: 10.1002/ecy.1818. Epub 2017 May 2.

PMID:
28317110
35.

A Spatio-Temporally Explicit Random Encounter Model for Large-Scale Population Surveys.

Jousimo J, Ovaskainen O.

PLoS One. 2016 Sep 9;11(9):e0162447. doi: 10.1371/journal.pone.0162447. eCollection 2016.

36.

Extending Joint Models in Community Ecology: A Response to Beissinger et al.

Warton DI, Blanchet FG, O'Hara R, Ovaskainen O, Taskinen S, Walker SC, Hui FKC.

Trends Ecol Evol. 2016 Oct;31(10):737-738. doi: 10.1016/j.tree.2016.07.007. Epub 2016 Aug 8. No abstract available.

PMID:
27515225
37.

Unbiased probabilistic taxonomic classification for DNA barcoding.

Somervuo P, Koskela S, Pennanen J, Henrik Nilsson R, Ovaskainen O.

Bioinformatics. 2016 Oct 1;32(19):2920-7. doi: 10.1093/bioinformatics/btw346. Epub 2016 Jun 13.

PMID:
27296980
38.

Novel Insights into the Map Stage of True Navigation in Nonmigratory Wild Birds (Stone Curlews, Burhinus oedicnemus).

Orchan Y, Ovaskainen O, Bouten W, Nathan R.

Am Nat. 2016 Jun;187(6):E152-65. doi: 10.1086/686054. Epub 2016 Apr 19.

PMID:
27172601
39.

Post-fledging movements of white-tailed eagles: Conservation implications for wind-energy development.

Balotari-Chiebao F, Villers A, Ijäs A, Ovaskainen O, Repka S, Laaksonen T.

Ambio. 2016 Nov;45(7):831-840. Epub 2016 Apr 26.

40.

Erratum to: Home-range use patterns and movements of the Siberian flying squirrel in urban forests: effects of habitat composition and connectivity.

Mäkeläinen S, de Knegt HJ, Ovaskainen O, Hanski IK.

Mov Ecol. 2016 Apr 14;4:13. doi: 10.1186/s40462-016-0076-7. eCollection 2016.

41.

Beyond metacommunity paradigms: habitat configuration, life history, and movement shape an herbivore community on oak.

Zheng C, Ovaskainen O, Roslin T, Tack AJ.

Ecology. 2015 Dec;96(12):3175-85.

PMID:
26909424
42.

Home-range use patterns and movements of the Siberian flying squirrel in urban forests: Effects of habitat composition and connectivity.

Mäkeläinen S, de Knegt HJ, Ovaskainen O, Hanski IK.

Mov Ecol. 2016 Feb 17;4:5. doi: 10.1186/s40462-016-0071-z. eCollection 2016. Erratum in: Mov Ecol. 2016;4:13.

43.

Defaunation affects carbon storage in tropical forests.

Bello C, Galetti M, Pizo MA, Magnago LF, Rocha MF, Lima RA, Peres CA, Ovaskainen O, Jordano P.

Sci Adv. 2015 Dec 18;1(11):e1501105. doi: 10.1126/sciadv.1501105. eCollection 2015 Dec.

44.

So Many Variables: Joint Modeling in Community Ecology.

Warton DI, Blanchet FG, O'Hara RB, Ovaskainen O, Taskinen S, Walker SC, Hui FKC.

Trends Ecol Evol. 2015 Dec;30(12):766-779. doi: 10.1016/j.tree.2015.09.007. Epub 2015 Oct 28. Review.

PMID:
26519235
45.

Evolution, plasticity and evolving plasticity of phenology in the tree species Alnus glutinosa.

De Kort H, Vander Mijnsbrugge K, Vandepitte K, Mergeay J, Ovaskainen O, Honnay O.

J Evol Biol. 2016 Feb;29(2):253-64. doi: 10.1111/jeb.12777. Epub 2015 Nov 17.

46.

Spore sensitivity to sunlight and freezing can restrict dispersal in wood-decay fungi.

Norros V, Karhu E, Nordén J, Vähätalo AV, Ovaskainen O.

Ecol Evol. 2015 Aug;5(16):3312-26. doi: 10.1002/ece3.1589. Epub 2015 Jul 22.

47.

Large-Scale Habitat Corridors for Biodiversity Conservation: A Forest Corridor in Madagascar.

Ramiadantsoa T, Ovaskainen O, Rybicki J, Hanski I.

PLoS One. 2015 Jul 22;10(7):e0132126. doi: 10.1371/journal.pone.0132126. eCollection 2015.

48.

The dual role of rivers in facilitating or hindering movements of the false heath fritillary butterfly.

Fabritius H, Rönkä K, Ovaskainen O.

Mov Ecol. 2015 Feb 16;3:4. doi: 10.1186/s40462-015-0031-z. eCollection 2015.

49.

Statistical ecology comes of age.

Gimenez O, Buckland ST, Morgan BJ, Bez N, Bertrand S, Choquet R, Dray S, Etienne MP, Fewster R, Gosselin F, Mérigot B, Monestiez P, Morales JM, Mortier F, Munoz F, Ovaskainen O, Pavoine S, Pradel R, Schurr FM, Thomas L, Thuiller W, Trenkel V, de Valpine P, Rexstad E.

Biol Lett. 2014 Dec;10(12):20140698. doi: 10.1098/rsbl.2014.0698.

50.

Predator-vole interactions in Northern Europe: the role of small mustelids revised.

Korpela K, Helle P, Henttonen H, Korpimäki E, Koskela E, Ovaskainen O, Pietiäinen H, Sundell J, Valkama J, Huitu O.

Proc Biol Sci. 2014 Dec 22;281(1797). pii: 20142119. doi: 10.1098/rspb.2014.2119.

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