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Items: 1 to 50 of 174

1.

Development of a Ubiquitin based probe for metalloprotease deubiquitinases.

Hameed DS, Sapmaz A, Burggraaff L, Amore A, Slingerland CJ, van Westen GJP, Ovaa H.

Angew Chem Int Ed Engl. 2019 Aug 5. doi: 10.1002/anie.201906790. [Epub ahead of print]

PMID:
31381834
2.

Chemical Tools and Biochemical Assays for SUMO Specific Proteases (SENPs).

Jia Y, Claessens LA, Vertegaal ACO, Ovaa H.

ACS Chem Biol. 2019 Aug 5. doi: 10.1021/acschembio.9b00402. [Epub ahead of print]

PMID:
31361113
3.

DNP-Supported Solid-State NMR Spectroscopy of Proteins Inside Mammalian Cells.

Narasimhan S, Scherpe S, Lucini Paioni A, van der Zwan J, Folkers GE, Ovaa H, Baldus M.

Angew Chem Int Ed Engl. 2019 Jun 24. doi: 10.1002/anie.201903246. [Epub ahead of print]

PMID:
31233270
4.

Rapid Covalent-Probe Discovery by Electrophile-Fragment Screening.

Resnick E, Bradley A, Gan J, Douangamath A, Krojer T, Sethi R, Geurink PP, Aimon A, Amitai G, Bellini D, Bennett J, Fairhead M, Fedorov O, Gabizon R, Gan J, Guo J, Plotnikov A, Reznik N, Ruda GF, Díaz-Sáez L, Straub VM, Szommer T, Velupillai S, Zaidman D, Zhang Y, Coker AR, Dowson CG, Barr HM, Wang C, Huber KVM, Brennan PE, Ovaa H, von Delft F, London N.

J Am Chem Soc. 2019 Jun 5;141(22):8951-8968. doi: 10.1021/jacs.9b02822. Epub 2019 May 22.

5.

Homeostasis of soluble proteins and the proteasome post nuclear envelope reformation in mitosis.

Spits M, Janssen LJ, Voortman LM, Kooij R, Neefjes ACM, Ovaa H, Neefjes J.

J Cell Sci. 2019 May 15;132(10). pii: jcs225524. doi: 10.1242/jcs.225524.

PMID:
30992344
6.

USP7: combining tools towards selectivity.

Gjonaj L, Sapmaz A, González-Prieto R, Vertegaal ACO, Flierman D, Ovaa H.

Chem Commun (Camb). 2019 Apr 25;55(35):5075-5078. doi: 10.1039/c9cc00969h.

PMID:
30972393
7.

Highlighting the Proteasome: Using Fluorescence to Visualize Proteasome Activity and Distribution.

Gan J, Leestemaker Y, Sapmaz A, Ovaa H.

Front Mol Biosci. 2019 Mar 22;6:14. doi: 10.3389/fmolb.2019.00014. eCollection 2019. Review.

8.

USP32 regulates late endosomal transport and recycling through deubiquitylation of Rab7.

Sapmaz A, Berlin I, Bos E, Wijdeven RH, Janssen H, Konietzny R, Akkermans JJ, Erson-Bensan AE, Koning RI, Kessler BM, Neefjes J, Ovaa H.

Nat Commun. 2019 Mar 29;10(1):1454. doi: 10.1038/s41467-019-09437-x.

9.

Synthetic ubiquitinated proteins meet the proteasome: Distinct roles of ubiquitin in a chain.

van der Heden van Noort GJ, Gan J, Ovaa H.

Proc Natl Acad Sci U S A. 2019 Apr 16;116(16):7614-7616. doi: 10.1073/pnas.1903405116. Epub 2019 Mar 29. No abstract available.

PMID:
30926663
10.

Profiling DUBs and Ubl-specific proteases with activity-based probes.

Geurink PP, van der Heden van Noort GJ, Mulder MPC, Knaap RCM, Kikkert M, Ovaa H.

Methods Enzymol. 2019;618:357-387. doi: 10.1016/bs.mie.2018.12.037. Epub 2019 Feb 14.

PMID:
30850060
11.

The Alkyne Moiety as a Latent Electrophile in Irreversible Covalent Small Molecule Inhibitors of Cathepsin K.

Mons E, Jansen IDC, Loboda J, van Doodewaerd BR, Hermans J, Verdoes M, van Boeckel CAA, van Veelen PA, Turk B, Turk D, Ovaa H.

J Am Chem Soc. 2019 Feb 27;141(8):3507-3514. doi: 10.1021/jacs.8b11027. Epub 2019 Feb 14.

12.

Cholesterol Metabolism Is a Druggable Axis that Independently Regulates Tau and Amyloid-β in iPSC-Derived Alzheimer's Disease Neurons.

van der Kant R, Langness VF, Herrera CM, Williams DA, Fong LK, Leestemaker Y, Steenvoorden E, Rynearson KD, Brouwers JF, Helms JB, Ovaa H, Giera M, Wagner SL, Bang AG, Goldstein LSB.

Cell Stem Cell. 2019 Mar 7;24(3):363-375.e9. doi: 10.1016/j.stem.2018.12.013. Epub 2019 Jan 24.

13.

Kinetic analysis of multistep USP7 mechanism shows critical role for target protein in activity.

Kim RQ, Geurink PP, Mulder MPC, Fish A, Ekkebus R, El Oualid F, van Dijk WJ, van Dalen D, Ovaa H, van Ingen H, Sixma TK.

Nat Commun. 2019 Jan 16;10(1):231. doi: 10.1038/s41467-018-08231-5.

14.

SUMOylation and the HSF1-Regulated Chaperone Network Converge to Promote Proteostasis in Response to Heat Shock.

Liebelt F, Sebastian RM, Moore CL, Mulder MPC, Ovaa H, Shoulders MD, Vertegaal ACO.

Cell Rep. 2019 Jan 2;26(1):236-249.e4. doi: 10.1016/j.celrep.2018.12.027.

15.

Selective PKCδ Inhibitor B106 Elicits Uveal Melanoma Growth Inhibitory Effects Independent of Activated PKC Isoforms.

Heijkants R, Teunisse A, de Vries J, Ovaa H, Jochemsen A.

ACS Chem Biol. 2019 Jan 18;14(1):132-136. doi: 10.1021/acschembio.8b00292. Epub 2019 Jan 2.

PMID:
30525429
16.

Enhanced Delivery of Synthetic Labelled Ubiquitin into Live Cells by Using Next-Generation Ub-TAT Conjugates.

Hameed DS, Sapmaz A, Gjonaj L, Merkx R, Ovaa H.

Chembiochem. 2018 Dec 18;19(24):2553-2557. doi: 10.1002/cbic.201800649. Epub 2018 Nov 27.

PMID:
30351505
17.

One-Step Chemical Synthesis of Native Met1-Linked Poly-Ubiquitin Chains.

van der Heden van Noort GJ, Talavera Ormeño C, van Dalen D, Ovaa H.

Chembiochem. 2019 Jan 2;20(1):62-65. doi: 10.1002/cbic.201800520. Epub 2018 Nov 7.

PMID:
30264452
18.

A MALDI-TOF Approach to Ubiquitin Ligase Activity.

van Tol BDM, Geurink PP, Ovaa H.

Cell Chem Biol. 2018 Sep 20;25(9):1053-1055. doi: 10.1016/j.chembiol.2018.09.002.

PMID:
30241600
19.

Dot1 promotes H2B ubiquitination by a methyltransferase-independent mechanism.

van Welsem T, Korthout T, Ekkebus R, Morais D, Molenaar TM, van Harten K, Poramba-Liyanage DW, Sun SM, Lenstra TL, Srivas R, Ideker T, Holstege FCP, van Attikum H, El Oualid F, Ovaa H, Stulemeijer IJE, Vlaming H, van Leeuwen F.

Nucleic Acids Res. 2018 Nov 30;46(21):11251-11261. doi: 10.1093/nar/gky801.

20.

Generation of the UFM1 Toolkit for Profiling UFM1-Specific Proteases and Ligases.

Witting KF, van der Heden van Noort GJ, Kofoed C, Talavera Ormeño C, El Atmioui D, Mulder MPC, Ovaa H.

Angew Chem Int Ed Engl. 2018 Oct 22;57(43):14164-14168. doi: 10.1002/anie.201809232. Epub 2018 Oct 1.

21.

How to Target Viral and Bacterial Effector Proteins Interfering with Ubiquitin Signaling.

van der Heden van Noort GJ, Ovaa H.

Curr Top Microbiol Immunol. 2019;420:111-130. doi: 10.1007/82_2018_134. Review.

PMID:
30178261
22.

Native chemical ligation at methionine bioisostere norleucine allows for N-terminal chemical protein ligation.

Xin BT, van Tol BDM, Ovaa H, Geurink PP.

Org Biomol Chem. 2018 Aug 29;16(34):6306-6315. doi: 10.1039/c8ob01627e.

PMID:
30117511
23.

Total Chemical Synthesis of SUMO and SUMO-Based Probes for Profiling the Activity of SUMO-Specific Proteases.

Mulder MPC, Merkx R, Witting KF, Hameed DS, El Atmioui D, Lelieveld L, Liebelt F, Neefjes J, Berlin I, Vertegaal ACO, Ovaa H.

Angew Chem Int Ed Engl. 2018 Jul 16;57(29):8958-8962. doi: 10.1002/anie.201803483. Epub 2018 Jun 14.

24.

Why do proteases mess up with antigen presentation by re-shuffling antigen sequences?

Liepe J, Ovaa H, Mishto M.

Curr Opin Immunol. 2018 Jun;52:81-86. doi: 10.1016/j.coi.2018.04.016. Epub 2018 Jun 1. Review.

25.

A flexible MHC class I multimer loading system for large-scale detection of antigen-specific T cells.

Luimstra JJ, Garstka MA, Roex MCJ, Redeker A, Janssen GMC, van Veelen PA, Arens R, Falkenburg JHF, Neefjes J, Ovaa H.

J Exp Med. 2018 May 7;215(5):1493-1504. doi: 10.1084/jem.20180156. Epub 2018 Apr 17.

26.

Probing ubiquitin and SUMO conjugation and deconjugation.

Ovaa H, Vertegaal ACO.

Biochem Soc Trans. 2018 Apr 17;46(2):423-436. doi: 10.1042/BST20170086. Epub 2018 Mar 27. Review.

PMID:
29588386
27.

SUMO targets the APC/C to regulate transition from metaphase to anaphase.

Eifler K, Cuijpers SAG, Willemstein E, Raaijmakers JA, El Atmioui D, Ovaa H, Medema RH, Vertegaal ACO.

Nat Commun. 2018 Mar 16;9(1):1119. doi: 10.1038/s41467-018-03486-4.

28.

A family of unconventional deubiquitinases with modular chain specificity determinants.

Hermanns T, Pichlo C, Woiwode I, Klopffleisch K, Witting KF, Ovaa H, Baumann U, Hofmann K.

Nat Commun. 2018 Feb 23;9(1):799. doi: 10.1038/s41467-018-03148-5.

29.

Irreversible inactivation of ISG15 by a viral leader protease enables alternative infection detection strategies.

Swatek KN, Aumayr M, Pruneda JN, Visser LJ, Berryman S, Kueck AF, Geurink PP, Ovaa H, van Kuppeveld FJM, Tuthill TJ, Skern T, Komander D.

Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):2371-2376. doi: 10.1073/pnas.1710617115. Epub 2018 Feb 20.

30.

Proteome-wide identification of ubiquitin interactions using UbIA-MS.

Zhang X, Smits AH, van Tilburg GB, Ovaa H, Huber W, Vermeulen M.

Nat Protoc. 2018 Mar;13(3):530-550. doi: 10.1038/nprot.2017.147. Epub 2018 Feb 15.

PMID:
29446774
31.

Proteasome inhibition and mechanism of resistance to a synthetic, library-based hexapeptide.

Oerlemans R, Berkers CR, Assaraf YG, Scheffer GL, Peters GJ, Verbrugge SE, Cloos J, Slootstra J, Meloen RH, Shoemaker RH, Dijkmans BAC, Scheper RJ, Ovaa H, Jansen G.

Invest New Drugs. 2018 Oct;36(5):797-809. doi: 10.1007/s10637-018-0569-x. Epub 2018 Feb 14.

32.

Dynamic recruitment of ubiquitin to mutant huntingtin inclusion bodies.

Juenemann K, Jansen AHP, van Riel L, Merkx R, Mulder MPC, An H, Statsyuk A, Kirstein J, Ovaa H, Reits EA.

Sci Rep. 2018 Jan 23;8(1):1405. doi: 10.1038/s41598-018-19538-0.

33.

Inhibition of the Deubiquitinase Usp14 Diminishes Direct MHC Class I Antigen Presentation.

Palmer AL, de Jong A, Leestemaker Y, Geurink PP, Wijdeven RH, Ovaa H, Dolan BP.

J Immunol. 2018 Feb 1;200(3):928-936. doi: 10.4049/jimmunol.1700273. Epub 2017 Dec 27.

34.

Tools to investigate the ubiquitin proteasome system.

Leestemaker Y, Ovaa H.

Drug Discov Today Technol. 2017 Dec;26:25-31. doi: 10.1016/j.ddtec.2017.11.006. Epub 2017 Nov 26. Review.

35.

A General Approach Towards Triazole-Linked Adenosine Diphosphate Ribosylated Peptides and Proteins.

Liu Q, Kistemaker HAV, Bhogaraju S, Dikic I, Overkleeft HS, van der Marel GA, Ovaa H, van der Heden van Noort GJ, Filippov DV.

Angew Chem Int Ed Engl. 2018 Feb 5;57(6):1659-1662. doi: 10.1002/anie.201710527. Epub 2018 Jan 8.

PMID:
29215186
36.

Microwave-assisted diastereoselective two-step three-component synthesis for rapid access to drug-like libraries of substituted 3-amino-β-lactams.

Janssen GV, van den Heuvel JAC, Megens RP, Benningshof JCJ, Ovaa H.

Bioorg Med Chem. 2018 Jan 1;26(1):41-49. doi: 10.1016/j.bmc.2017.11.014. Epub 2017 Nov 16.

37.

Synthesis of Poly-Ubiquitin Chains Using a Bifunctional Ubiquitin Monomer.

van der Heden van Noort GJ, Kooij R, Elliott PR, Komander D, Ovaa H.

Org Lett. 2017 Dec 15;19(24):6490-6493. doi: 10.1021/acs.orglett.7b03085. Epub 2017 Nov 27.

38.

Identification of a novel ATM inhibitor with cancer cell specific radiosensitization activity.

Dohmen AJC, Qiao X, Duursma A, Wijdeven RH, Lieftink C, Hageman F, Morris B, Halonen P, Vens C, van den Brekel MWM, Ovaa H, Neefjes J, Zuur CL.

Oncotarget. 2017 May 19;8(43):73925-73937. doi: 10.18632/oncotarget.18034. eCollection 2017 Sep 26.

39.

An LC-MS/MS method for quantification of the active abiraterone metabolite Δ(4)-abiraterone (D4A) in human plasma.

van Nuland M, Rosing H, de Vries J, Ovaa H, Schellens JHM, Beijnen JH.

J Chromatogr B Analyt Technol Biomed Life Sci. 2017 Nov 15;1068-1069:119-124. doi: 10.1016/j.jchromb.2017.10.033. Epub 2017 Oct 16.

PMID:
29059586
40.

A Fluorescence Polarization Activity-Based Protein Profiling Assay in the Discovery of Potent, Selective Inhibitors for Human Nonlysosomal Glucosylceramidase.

Lahav D, Liu B, van den Berg RJBHN, van den Nieuwendijk AMCH, Wennekes T, Ghisaidoobe AT, Breen I, Ferraz MJ, Kuo CL, Wu L, Geurink PP, Ovaa H, van der Marel GA, van der Stelt M, Boot RG, Davies GJ, Aerts JMFG, Overkleeft HS.

J Am Chem Soc. 2017 Oct 11;139(40):14192-14197. doi: 10.1021/jacs.7b07352. Epub 2017 Sep 29.

41.

Proteasome activity regulates CD8+ T lymphocyte metabolism and fate specification.

Widjaja CE, Olvera JG, Metz PJ, Phan AT, Savas JN, de Bruin G, Leestemaker Y, Berkers CR, de Jong A, Florea BI, Fisch K, Lopez J, Kim SH, Garcia DA, Searles S, Bui JD, Chang AN, Yates JR 3rd, Goldrath AW, Overkleeft HS, Ovaa H, Chang JT.

J Clin Invest. 2017 Oct 2;127(10):3609-3623. doi: 10.1172/JCI90895. Epub 2017 Aug 28.

42.

Release of Enzymatically Active Deubiquitinating Enzymes upon Reversible Capture by Disulfide Ubiquitin Reagents.

de Jong A, Witting K, Kooij R, Flierman D, Ovaa H.

Angew Chem Int Ed Engl. 2017 Oct 9;56(42):12967-12970. doi: 10.1002/anie.201706738. Epub 2017 Sep 12.

43.

Elucidating crosstalk mechanisms between phosphorylation and O-GlcNAcylation.

Leney AC, El Atmioui D, Wu W, Ovaa H, Heck AJR.

Proc Natl Acad Sci U S A. 2017 Aug 29;114(35):E7255-E7261. doi: 10.1073/pnas.1620529114. Epub 2017 Aug 14.

44.

Proteasome Activation by Small Molecules.

Leestemaker Y, de Jong A, Witting KF, Penning R, Schuurman K, Rodenko B, Zaal EA, van de Kooij B, Laufer S, Heck AJR, Borst J, Scheper W, Berkers CR, Ovaa H.

Cell Chem Biol. 2017 Jun 22;24(6):725-736.e7. doi: 10.1016/j.chembiol.2017.05.010. Epub 2017 May 25.

45.

Advancing our Understanding of Ubiquitination Using the Ub-Toolkit.

Witting KF, Mulder MPC, Ovaa H.

J Mol Biol. 2017 Nov 10;429(22):3388-3394. doi: 10.1016/j.jmb.2017.04.002. Epub 2017 Apr 11. Review.

46.

Polyubiquitin-Photoactivatable Crosslinking Reagents for Mapping Ubiquitin Interactome Identify Rpn1 as a Proteasome Ubiquitin-Associating Subunit.

Chojnacki M, Mansour W, Hameed DS, Singh RK, El Oualid F, Rosenzweig R, Nakasone MA, Yu Z, Glaser F, Kay LE, Fushman D, Ovaa H, Glickman MH.

Cell Chem Biol. 2017 Apr 20;24(4):443-457.e6. doi: 10.1016/j.chembiol.2017.02.013. Epub 2017 Mar 16.

47.

Mycobacterium tuberculosis Proteasome Accessory Factor A (PafA) Can Transfer Prokaryotic Ubiquitin-Like Protein (Pup) between Substrates.

Zhang S, Burns-Huang KE, Janssen GV, Li H, Ovaa H, Hedstrom L, Darwin KH.

MBio. 2017 Feb 21;8(1). pii: e00122-17. doi: 10.1128/mBio.00122-17.

48.

An Interaction Landscape of Ubiquitin Signaling.

Zhang X, Smits AH, van Tilburg GB, Jansen PW, Makowski MM, Ovaa H, Vermeulen M.

Mol Cell. 2017 Mar 2;65(5):941-955.e8. doi: 10.1016/j.molcel.2017.01.004. Epub 2017 Feb 9.

49.

Structural basis of the specificity of USP18 toward ISG15.

Basters A, Geurink PP, Röcker A, Witting KF, Tadayon R, Hess S, Semrau MS, Storici P, Ovaa H, Knobeloch KP, Fritz G.

Nat Struct Mol Biol. 2017 Mar;24(3):270-278. doi: 10.1038/nsmb.3371. Epub 2017 Feb 6.

50.

Discovery of potent inhibitors of the lysophospholipase autotaxin.

Shah P, Cheasty A, Foxton C, Raynham T, Farooq M, Gutierrez IF, Lejeune A, Pritchard M, Turnbull A, Pang L, Owen P, Boyd S, Stowell A, Jordan A, Hamilton NM, Hitchin JR, Stockley M, MacDonald E, Quesada MJ, Trivier E, Skeete J, Ovaa H, Moolenaar WH, Ryder H.

Bioorg Med Chem Lett. 2016 Nov 15;26(22):5403-5410. doi: 10.1016/j.bmcl.2016.10.036. Epub 2016 Oct 14.

PMID:
27780639

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