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Items: 40

1.

The neural substrate of self- and other-concerned wellbeing: An fMRI study.

Jo H, Ou YY, Kung CC.

PLoS One. 2019 Oct 1;14(10):e0203974. doi: 10.1371/journal.pone.0203974. eCollection 2019.

2.

Prediction of ATP-binding sites in membrane proteins using a two-dimensional convolutional neural network.

Nguyen TT, Le NQ, Kusuma RMI, Ou YY.

J Mol Graph Model. 2019 Nov;92:86-93. doi: 10.1016/j.jmgm.2019.07.003. Epub 2019 Jul 15.

PMID:
31344547
3.

Using word embedding technique to efficiently represent protein sequences for identifying substrate specificities of transporters.

Nguyen TT, Le NQ, Ho QT, Phan DV, Ou YY.

Anal Biochem. 2019 Jul 15;577:73-81. doi: 10.1016/j.ab.2019.04.011. Epub 2019 Apr 22.

PMID:
31022378
4.

iMotor-CNN: Identifying molecular functions of cytoskeleton motor proteins using 2D convolutional neural network via Chou's 5-step rule.

Le NQK, Yapp EKY, Ou YY, Yeh HY.

Anal Biochem. 2019 Jun 15;575:17-26. doi: 10.1016/j.ab.2019.03.017. Epub 2019 Mar 28.

PMID:
30930199
5.

DeepIon: Deep learning approach for classifying ion transporters and ion channels from membrane proteins.

Taju SW, Ou YY.

J Comput Chem. 2019 Jun 5;40(15):1521-1529. doi: 10.1002/jcc.25805. Epub 2019 Mar 18.

PMID:
30883833
6.

Using two-dimensional convolutional neural networks for identifying GTP binding sites in Rab proteins.

Le NQK, Ho QT, Ou YY.

J Bioinform Comput Biol. 2019 Feb;17(1):1950005. doi: 10.1142/S0219720019500057.

PMID:
30866734
7.

iEnhancer-5Step: Identifying enhancers using hidden information of DNA sequences via Chou's 5-step rule and word embedding.

Le NQK, Yapp EKY, Ho QT, Nagasundaram N, Ou YY, Yeh HY.

Anal Biochem. 2019 Apr 15;571:53-61. doi: 10.1016/j.ab.2019.02.017. Epub 2019 Feb 26.

PMID:
30822398
8.

Incorporating post translational modification information for enhancing the predictive performance of membrane transport proteins.

Le NQK, Sandag GA, Ou YY.

Comput Biol Chem. 2018 Dec;77:251-260. doi: 10.1016/j.compbiolchem.2018.10.010. Epub 2018 Oct 18.

PMID:
30393099
9.

Classifying the molecular functions of Rab GTPases in membrane trafficking using deep convolutional neural networks.

Le NQ, Ho QT, Ou YY.

Anal Biochem. 2018 Aug 15;555:33-41. doi: 10.1016/j.ab.2018.06.011. Epub 2018 Jun 13.

PMID:
29908156
10.

DeepEfflux: a 2D convolutional neural network model for identifying families of efflux proteins in transporters.

Taju SW, Nguyen TT, Le NQ, Kusuma RMI, Ou YY.

Bioinformatics. 2018 Sep 15;34(18):3111-3117. doi: 10.1093/bioinformatics/bty302.

PMID:
29668844
11.

Polymyxin B as an inhibitor of lipopolysaccharides contamination of herb crude polysaccharides in mononuclear cells.

Lu XX, Jiang YF, Li H, Ou YY, Zhang ZD, DI HY, Chen DF, Zhang YY.

Chin J Nat Med. 2017 Jul;15(7):487-494. doi: 10.1016/S1875-5364(17)30074-2.

PMID:
28807222
12.

Incorporating deep learning with convolutional neural networks and position specific scoring matrices for identifying electron transport proteins.

Le NQ, Ho QT, Ou YY.

J Comput Chem. 2017 Sep 5;38(23):2000-2006. doi: 10.1002/jcc.24842. Epub 2017 Jun 22.

PMID:
28643394
13.

Identifying the molecular functions of electron transport proteins using radial basis function networks and biochemical properties.

Le NQ, Nguyen TT, Ou YY.

J Mol Graph Model. 2017 May;73:166-178. doi: 10.1016/j.jmgm.2017.01.003. Epub 2017 Feb 2.

PMID:
28285094
14.
15.

Polysaccharides from Arnebia euchroma Ameliorated Endotoxic Fever and Acute Lung Injury in Rats Through Inhibiting Complement System.

Ou YY, Jiang Y, Li H, Zhang YY, Lu Y, Chen DF.

Inflammation. 2017 Feb;40(1):275-284. doi: 10.1007/s10753-016-0478-0.

PMID:
27913955
16.
17.

Human embryonic lung fibroblasts treated with artesunate exhibit reduced rates of proliferation and human cytomegalovirus infection in vitro.

Zeng AH, Ou YY, Guo MM, Dai X, Zhou DZ, Chen R.

J Thorac Dis. 2015 Jul;7(7):1151-7. doi: 10.3978/j.issn.2072-1439.2015.07.05.

18.

Houttuyniacordata Thunb. polysaccharides ameliorates lipopolysaccharide-induced acute lung injury in mice.

Xu YY, Zhang YY, Ou YY, Lu XX, Pan LY, Li H, Lu Y, Chen DF.

J Ethnopharmacol. 2015 Sep 15;173:81-90. doi: 10.1016/j.jep.2015.07.015. Epub 2015 Jul 17.

PMID:
26190353
19.

Complete mitochondrial genome of Papilio syfanius (Lepidoptera: Papilionidae).

Dong Y, Zhu LX, Ding MJ, Wang JJ, Luo LG, Liu Y, Ou YY.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016;27(1):403-4. doi: 10.3109/19401736.2014.898278. Epub 2014 Mar 12.

PMID:
24621224
20.

Identification of efflux proteins using efficient radial basis function networks with position-specific scoring matrices and biochemical properties.

Ou YY, Chen SA, Chang YM, Velmurugan D, Fukui K, Michael Gromiha M.

Proteins. 2013 Sep;81(9):1634-43. doi: 10.1002/prot.24322. Epub 2013 Jun 17.

PMID:
23670815
21.

Bioinformatics approaches for functional annotation of membrane proteins.

Gromiha MM, Ou YY.

Brief Bioinform. 2014 Mar;15(2):155-68. doi: 10.1093/bib/bbt015. Epub 2013 Mar 23. Review.

PMID:
23524979
22.
23.

Beneficial effect of Bupleurum polysaccharides on autoimmune-prone MRL-lpr mice.

Jiang YW, Li H, Zhang YY, Li W, Jiang YF, Ou YY, Chen DF.

Clin Dev Immunol. 2012;2012:842928. doi: 10.1155/2012/842928. Epub 2012 Jun 4.

24.

Synthesis of quinolin-2-one alkaloid derivatives and their inhibitory activities against HIV-1 reverse transcriptase.

Cheng P, Gu Q, Liu W, Zou JF, Ou YY, Luo ZY, Zeng JG.

Molecules. 2011 Sep 7;16(9):7649-61. doi: 10.3390/molecules16097649.

25.

Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties.

Chen SA, Ou YY, Lee TY, Gromiha MM.

Bioinformatics. 2011 Aug 1;27(15):2062-7. doi: 10.1093/bioinformatics/btr340. Epub 2011 Jun 8.

PMID:
21653515
26.

Incorporating distant sequence features and radial basis function networks to identify ubiquitin conjugation sites.

Lee TY, Chen SA, Hung HY, Ou YY.

PLoS One. 2011 Mar 9;6(3):e17331. doi: 10.1371/journal.pone.0017331.

27.
28.
29.

Prediction of membrane spanning segments and topology in beta-barrel membrane proteins at better accuracy.

Ou YY, Chen SA, Gromiha MM.

J Comput Chem. 2010 Jan 15;31(1):217-23. doi: 10.1002/jcc.21281.

PMID:
19421989
30.

Prediction of protein secondary structures with a novel kernel density estimation based classifier.

Chang DT, Ou YY, Hung HG, Yang MH, Chen CY, Oyang YJ.

BMC Res Notes. 2008 Jul 23;1:51. doi: 10.1186/1756-0500-1-51.

31.

TMBETADISC-RBF: Discrimination of beta-barrel membrane proteins using RBF networks and PSSM profiles.

Ou YY, Gromiha MM, Chen SA, Suwa M.

Comput Biol Chem. 2008 Jun;32(3):227-31. doi: 10.1016/j.compbiolchem.2008.03.002. Epub 2008 Mar 18.

PMID:
18434251
32.
33.
34.

Data classification with radial basis function networks based on a novel kernel density estimation algorithm.

Oyang YJ, Hwang SC, Ou YY, Chen CY, Chen ZW.

IEEE Trans Neural Netw. 2005 Jan;16(1):225-36.

PMID:
15732402
35.

MKKS/BBS6, a divergent chaperonin-like protein linked to the obesity disorder Bardet-Biedl syndrome, is a novel centrosomal component required for cytokinesis.

Kim JC, Ou YY, Badano JL, Esmail MA, Leitch CC, Fiedrich E, Beales PL, Archibald JM, Katsanis N, Rattner JB, Leroux MR.

J Cell Sci. 2005 Mar 1;118(Pt 5):1007-20.

36.

Higher order structure of the PCM adjacent to the centriole.

Ou YY, Zhang M, Chi S, Matyas JR, Rattner JB.

Cell Motil Cytoskeleton. 2003 Jun;55(2):125-33.

PMID:
12740873
37.

CEP110 and ninein are located in a specific domain of the centrosome associated with centrosome maturation.

Ou YY, Mack GJ, Zhang M, Rattner JB.

J Cell Sci. 2002 May 1;115(Pt 9):1825-35.

38.

Post-karyokinesis centrosome movement leaves a trail of unanswered questions.

Ou YY, Rattner JB.

Cell Motil Cytoskeleton. 2002 Mar;51(3):123-32. Review.

PMID:
11921169
39.

[The clinical and radiological manifestations of brucellosis spondylitis (analysis of 19 cases and review of literature) (author's transl)].

OU YY.

Zhonghua Fang She Xue Za Zhi. 1980 Feb;14(1):30-3. Chinese. No abstract available.

PMID:
6451375
40.

Galactography: report of 86 cases.

Ou YY, Hu CC, Chang YL, Yuan DC, Chang HF, Wang KC.

Chin Med J (Engl). 1978 Nov;4(6):457-64. No abstract available.

PMID:
104837

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