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Global transcriptomic analyses of Salmonella enterica in Iron-depleted and Iron-rich growth conditions.

Khajanchi BK, Xu J, Grim CJ, Ottesen AR, Ramachandran P, Foley SL.

BMC Genomics. 2019 Jun 13;20(1):490. doi: 10.1186/s12864-019-5768-0.


Secretoneurin Is an Endogenous Calcium/Calmodulin-Dependent Protein Kinase II Inhibitor That Attenuates Ca2+-Dependent Arrhythmia.

Ottesen AH, Carlson CR, Eken OS, Sadredini M, Myhre PL, Shen X, Dalhus B, Laver DR, Lunde PK, Kurola J, Lunde M, Hoff JE, Godang K, Sjaastad I, Pettilä V, Stridsberg M, Lehnart SE, Edwards AG, Lunde IG, Omland T, Stokke MK, Christensen G, Røsjø H, Louch WE.

Circ Arrhythm Electrophysiol. 2019 Apr;12(4):e007045. doi: 10.1161/CIRCEP.118.007045.


Microbiota of the Hickey Run Tributary of the Anacostia River.

Cagle R, Ramachandran P, Reed E, Commichaux S, Mammel MK, Lacher DW, Miller D, Lindley S, Pop M, Bazaco MC, Wolpert B, Strain EA, Aker S, Feely J, Ottesen A.

Microbiol Resour Announc. 2019 Mar 21;8(12). pii: e00123-19. doi: 10.1128/MRA.00123-19.


Impact of routine sanitation on the microbiomes in a fresh produce processing facility.

Gu G, Ottesen A, Bolten S, Wang L, Luo Y, Rideout S, Lyu S, Nou X.

Int J Food Microbiol. 2019 Apr 2;294:31-41. doi: 10.1016/j.ijfoodmicro.2019.02.002. Epub 2019 Feb 2.


Circulating Secretoneurin Concentrations After Cardiac Surgery: Data From the FINNish Acute Kidney Injury Heart Study.

Brynildsen J, Petäjä L, Myhre PL, Lyngbakken MN, Nygård S, Stridsberg M, Christensen G, Ottesen AH, Pettilä V, Omland T, Røsjø H.

Crit Care Med. 2019 May;47(5):e412-e419. doi: 10.1097/CCM.0000000000003670.


Metagenome tracking biogeographic agroecology: Phytobiota of tomatoes from Virginia, Maryland, North Carolina and California.

Ottesen A, Ramachandran P, Reed E, Gu G, Gorham S, Ducharme D, Newell M, Rideout S, Turini T, Hill T, Strain E, Brown E.

Food Microbiol. 2019 Jun;79:132-136. doi: 10.1016/ Epub 2018 Dec 5.


Metagenomics of pasteurized and unpasteurized gouda cheese using targeted 16S rDNA sequencing.

Salazar JK, Carstens CK, Ramachandran P, Shazer AG, Narula SS, Reed E, Ottesen A, Schill KM.

BMC Microbiol. 2018 Nov 19;18(1):189. doi: 10.1186/s12866-018-1323-4.


Microbiomes Associated With Foods From Plant and Animal Sources.

Jarvis KG, Daquigan N, White JR, Morin PM, Howard LM, Manetas JE, Ottesen A, Ramachandran P, Grim CJ.

Front Microbiol. 2018 Oct 23;9:2540. doi: 10.3389/fmicb.2018.02540. eCollection 2018.


Agricultural Practices Influence Salmonella Contamination and Survival in Pre-harvest Tomato Production.

Gu G, Strawn LK, Oryang DO, Zheng J, Reed EA, Ottesen AR, Bell RL, Chen Y, Duret S, Ingram DT, Reiter MS, Pfuntner R, Brown EW, Rideout SL.

Front Microbiol. 2018 Oct 16;9:2451. doi: 10.3389/fmicb.2018.02451. eCollection 2018.


Insect exclusion limits variation in bacterial microbiomes of tomato flowers and fruit.

Allard SM, Ottesen AR, Brown EW, Micallef SA.

J Appl Microbiol. 2018 Aug 26. doi: 10.1111/jam.14087. [Epub ahead of print]


Health care policy at a crossroads? A discursive study of patient agency in national health quality strategies between 1993 and 2015.

Lassen I, Ottesen AM, Strunck J.

Nurs Inq. 2018 Oct;25(4):e12252. doi: 10.1111/nin.12252. Epub 2018 Jul 5.


Characterization of the Microbiota of Oyster Larvae (Crassostrea virginica) and Tank Water from an Aquaculture System with High and Low Larval Survival Rates.

Ramachandran P, Reed E, Commichaux S, Strain E, Depaola A, Rikard S, Ottesen A.

Genome Announc. 2018 Jun 21;6(25). pii: e00597-18. doi: 10.1128/genomeA.00597-18.


Sequencing the Vine of the Soul: Full Chloroplast Genome Sequence of Banisteriopsis caapi.

Ramachandran P, Zhang N, McLaughlin WB, Luo Y, Handy S, Duke JA, Vasquez R, Ottesen A.

Genome Announc. 2018 Jun 21;6(25). pii: e00203-18. doi: 10.1128/genomeA.00203-18.


Exploring the Microbiome of Callinectes sapidus (Maryland Blue Crab).

Ramachandran P, Reed E, Ottesen A.

Genome Announc. 2018 May 31;6(22). pii: e00466-18. doi: 10.1128/genomeA.00466-18.


Metagenomic Description of Preenrichment and Postenrichment of Recalled Chapati Atta Flour Using a Shotgun Sequencing Approach.

Lusk Pfefer T, Ramachandran P, Reed E, Kase JA, Ottesen A.

Genome Announc. 2018 May 24;6(21). pii: e00305-18. doi: 10.1128/genomeA.00305-18.


Shifts in spinach microbial communities after chlorine washing and storage at compliant and abusive temperatures.

Gu G, Ottesen A, Bolten S, Ramachandran P, Reed E, Rideout S, Luo Y, Patel J, Brown E, Nou X.

Food Microbiol. 2018 Aug;73:73-84. doi: 10.1016/ Epub 2018 Jan 4.


Genomics of foodborne pathogens for microbial food safety.

Allard MW, Bell R, Ferreira CM, Gonzalez-Escalona N, Hoffmann M, Muruvanda T, Ottesen A, Ramachandran P, Reed E, Sharma S, Stevens E, Timme R, Zheng J, Brown EW.

Curr Opin Biotechnol. 2018 Feb;49:224-229. doi: 10.1016/j.copbio.2017.11.002. Epub 2017 Nov 21. Review.


Glycosylated Chromogranin A: Potential Role in the Pathogenesis of Heart Failure.

Ottesen AH, Christensen G, Omland T, Røsjø H.

Curr Heart Fail Rep. 2017 Dec;14(6):478-488. doi: 10.1007/s11897-017-0360-x. Review.


High-Resolution Microbiome Profiling for Detection and Tracking of Salmonella enterica.

Grim CJ, Daquigan N, Lusk Pfefer TS, Ottesen AR, White JR, Jarvis KG.

Front Microbiol. 2017 Aug 18;8:1587. doi: 10.3389/fmicb.2017.01587. eCollection 2017.


Microbiomes of American Oysters (Crassostrea virginica) Harvested from Two Sites in the Chesapeake Bay.

Ossai S, Ramachandran P, Ottesen A, Reed E, DePaola A, Parveen S.

Genome Announc. 2017 Jul 27;5(30). pii: e00729-17. doi: 10.1128/genomeA.00729-17.


Development of a Reference Standard Library of Chloroplast Genome Sequences, GenomeTrakrCP.

Zhang N, Ramachandran P, Wen J, Duke JA, Metzman H, McLaughlin W, Ottesen AR, Timme RE, Handy SM.

Planta Med. 2017 Dec;83(18):1420-1430. doi: 10.1055/s-0043-113449. Epub 2017 Jun 26.


Reconstructing a herbivore's diet using a novel rbcL DNA mini-barcode for plants.

Erickson DL, Reed E, Ramachandran P, Bourg NA, McShea WJ, Ottesen A.

AoB Plants. 2017 Apr 21;9(3):plx015. doi: 10.1093/aobpla/plx015. eCollection 2017 May.


An analysis of Echinacea chloroplast genomes: Implications for future botanical identification.

Zhang N, Erickson DL, Ramachandran P, Ottesen AR, Timme RE, Funk VA, Luo Y, Handy SM.

Sci Rep. 2017 Mar 16;7(1):216. doi: 10.1038/s41598-017-00321-6.


Glycosylated Chromogranin A in Heart Failure: Implications for Processing and Cardiomyocyte Calcium Homeostasis.

Ottesen AH, Carlson CR, Louch WE, Dahl MB, Sandbu RA, Johansen RF, Jarstadmarken H, Bjørås M, Høiseth AD, Brynildsen J, Sjaastad I, Stridsberg M, Omland T, Christensen G, Røsjø H.

Circ Heart Fail. 2017 Feb;10(2). pii: e003675. doi: 10.1161/CIRCHEARTFAILURE.116.003675.


Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak.

Ottesen A, Ramachandran P, Reed E, White JR, Hasan N, Subramanian P, Ryan G, Jarvis K, Grim C, Daquiqan N, Hanes D, Allard M, Colwell R, Brown E, Chen Y.

BMC Microbiol. 2016 Nov 16;16(1):275.


Avoiding Pandemic Fears in the Subway and Conquering the Platypus.

Gonzalez A, Vázquez-Baeza Y, Pettengill JB, Ottesen A, McDonald D, Knight R.

mSystems. 2016 Jun 28;1(3). pii: e00050-16. eCollection 2016 May-Jun.


Using a Control to Better Understand Phyllosphere Microbiota.

Ottesen AR, Gorham S, Reed E, Newell MJ, Ramachandran P, Canida T, Allard M, Evans P, Brown E, White JR.

PLoS One. 2016 Sep 26;11(9):e0163482. doi: 10.1371/journal.pone.0163482. eCollection 2016.


Solanum lycopersicum (tomato) hosts robust phyllosphere and rhizosphere bacterial communities when grown in soil amended with various organic and synthetic fertilizers.

Allard SM, Walsh CS, Wallis AE, Ottesen AR, Brown EW, Micallef SA.

Sci Total Environ. 2016 Dec 15;573:555-563. doi: 10.1016/j.scitotenv.2016.08.157. Epub 2016 Aug 28.


Prognostic Value of Secretoneurin in Patients with Acute Respiratory Failure: Data from the FINNALI Study.

Myhre PL, Ottesen AH, Okkonen M, Linko R, Stridsberg M, Nygård S, Christensen G, Pettilä V, Omland T, Røsjø H; FINNALI Laboratory Study Group.

Clin Chem. 2016 Oct;62(10):1380-9. doi: 10.1373/clinchem.2016.258764. Epub 2016 Aug 18.


Prognostic Value of Secretoneurin in Critically Ill Patients With Infections.

Røsjø H, Stridsberg M, Ottesen AH, Nygård S, Christensen G, Pettilä V, Linko R, Karlsson S, Varpula T, Ruokonen E, Omland T; FINNSEPSIS and FINNALI Study Groups.

Crit Care Med. 2016 Oct;44(10):1882-90. doi: 10.1097/CCM.0000000000001832.


Comparison of Microbial Communities Isolated from Feces of Asymptomatic Salmonella-Shedding and Non-Salmonella Shedding Dairy Cows.

Haley BJ, Pettengill J, Gorham S, Ottesen A, Karns JS, Van Kessel JA.

Front Microbiol. 2016 Jun 1;7:691. doi: 10.3389/fmicb.2016.00691. eCollection 2016.


Association Between Relative Anemia and Early Functional Recovery After Severe Traumatic Brain Injury (TBI).

Carr KR, Rodriguez M, Ottesen A, Michalek J, Son C, Patel V, Jimenez D, Seifi A.

Neurocrit Care. 2016 Oct;25(2):185-92. doi: 10.1007/s12028-016-0273-7.


Recent and emerging innovations in Salmonella detection: a food and environmental perspective.

Bell RL, Jarvis KG, Ottesen AR, McFarland MA, Brown EW.

Microb Biotechnol. 2016 May;9(3):279-92. doi: 10.1111/1751-7915.12359. Epub 2016 Apr 4. Review.


Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing.

Jarvis KG, White JR, Grim CJ, Ewing L, Ottesen AR, Beaubrun JJ, Pettengill JB, Brown E, Hanes DE.

BMC Microbiol. 2015 Aug 12;15:160. doi: 10.1186/s12866-015-0497-2.


Tracing Origins of the Salmonella Bareilly Strain Causing a Food-borne Outbreak in the United States.

Hoffmann M, Luo Y, Monday SR, Gonzalez-Escalona N, Ottesen AR, Muruvanda T, Wang C, Kastanis G, Keys C, Janies D, Senturk IF, Catalyurek UV, Wang H, Hammack TS, Wolfgang WJ, Schoonmaker-Bopp D, Chu A, Myers R, Haendiges J, Evans PS, Meng J, Strain EA, Allard MW, Brown EW.

J Infect Dis. 2016 Feb 15;213(4):502-8. doi: 10.1093/infdis/jiv297. Epub 2015 May 20.


Secretoneurin is a novel prognostic cardiovascular biomarker associated with cardiomyocyte calcium handling.

Ottesen AH, Louch WE, Carlson CR, Landsverk OJB, Kurola J, Johansen RF, Moe MK, Aronsen JM, Høiseth AD, Jarstadmarken H, Nygård S, Bjørås M, Sjaastad I, Pettilä V, Stridsberg M, Omland T, Christensen G, Røsjø H.

J Am Coll Cardiol. 2015 Feb 3;65(4):339-351. doi: 10.1016/j.jacc.2014.10.065.


The impact of systemic and copper pesticide applications on the phyllosphere microflora of tomatoes.

Ottesen AR, Gorham S, Pettengill JB, Rideout S, Evans P, Brown E.

J Sci Food Agric. 2015 Mar 30;95(5):1116-25. doi: 10.1002/jsfa.7010. Epub 2014 Dec 11.


An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella.

Pettengill JB, Luo Y, Davis S, Chen Y, Gonzalez-Escalona N, Ottesen A, Rand H, Allard MW, Strain E.

PeerJ. 2014 Oct 14;2:e620. doi: 10.7717/peerj.620. eCollection 2014.


Co-enriching microflora associated with culture based methods to detect Salmonella from tomato phyllosphere.

Ottesen AR, Gonzalez A, Bell R, Arce C, Rideout S, Allard M, Evans P, Strain E, Musser S, Knight R, Brown E, Pettengill JB.

PLoS One. 2013 Sep 9;8(9):e73079. doi: 10.1371/journal.pone.0073079. eCollection 2013.


Comparing source of agricultural contact water and the presence of fecal indicator organisms on the surface of 'juliet' grape tomatoes.

Pahl DM, Telias A, Newell M, Ottesen AR, Walsh CS.

J Food Prot. 2013 Jun;76(6):967-74. doi: 10.4315/0362-028X.JFP-12-204.


Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato).

Ottesen AR, González Peña A, White JR, Pettengill JB, Li C, Allard S, Rideout S, Allard M, Hill T, Evans P, Strain E, Musser S, Knight R, Brown E.

BMC Microbiol. 2013 May 24;13:114. doi: 10.1186/1471-2180-13-114.


Genome-wide assessment of the association of rare and common copy number variations to testicular germ cell cancer.

Edsgärd D, Dalgaard MD, Weinhold N, Wesolowska-Andersen A, Rajpert-De Meyts E, Ottesen AM, Juul A, Skakkebæk NE, Skøt Jensen T, Gupta R, Leffers H, Brunak S.

Front Endocrinol (Lausanne). 2013 Jan 29;4:2. doi: 10.3389/fendo.2013.00002. eCollection 2013.


Characterization of microflora in Latin-style cheeses by next-generation sequencing technology.

Lusk TS, Ottesen AR, White JR, Allard MW, Brown EW, Kase JA.

BMC Microbiol. 2012 Nov 7;12:254. doi: 10.1186/1471-2180-12-254.


Using metagenomic analyses to estimate the consequences of enrichment bias for pathogen detection.

Pettengill JB, McAvoy E, White JR, Allard M, Brown E, Ottesen A.

BMC Res Notes. 2012 Jul 27;5:378. doi: 10.1186/1756-0500-5-378.


Pyrosequencing of bacterial symbionts within Axinella corrugata sponges: diversity and seasonal variability.

White JR, Patel J, Ottesen A, Arce G, Blackwelder P, Lopez JV.

PLoS One. 2012;7(6):e38204. doi: 10.1371/journal.pone.0038204. Epub 2012 Jun 12.


[Breastfeeding reduces risk of obesity among children 12 months of age].

Ottesen AS, Mathiesen ER.

Ugeskr Laeger. 2012 Jun 11;174(24):1661-4. Danish.


Secretogranin II; a protein increased in the myocardium and circulation in heart failure with cardioprotective properties.

Røsjø H, Stridsberg M, Florholmen G, Stensløkken KO, Ottesen AH, Sjaastad I, Husberg C, Dahl MB, Øie E, Louch WE, Omland T, Christensen G.

PLoS One. 2012;7(5):e37401. doi: 10.1371/journal.pone.0037401. Epub 2012 May 24.


Differential regulation of MHC II and invariant chain expression during maturation of monocyte-derived dendritic cells.

Landsverk OJ, Ottesen AH, Berg-Larsen A, Appel S, Bakke O.

J Leukoc Biol. 2012 May;91(5):729-37. doi: 10.1189/jlb.0311150. Epub 2012 Feb 27.


Heterozygous deletion at the RLN1 locus in a family with testicular germ cell cancer identified by integrating copy number variation data with phenome and interactome information.

Edsgärd D, Scheel M, Hansen NT, Ralfkiaer U, Jensen TS, Skakkebaek NE, Brunak S, Gupta R, Rajpert-De Meyts E, Ottesen AM.

Int J Androl. 2011 Aug;34(4 Pt 2):e122-32. doi: 10.1111/j.1365-2605.2011.01188.x. Epub 2011 Jun 22.


Bacterial community diversity and variation in spray water sources and the tomato fruit surface.

Telias A, White JR, Pahl DM, Ottesen AR, Walsh CS.

BMC Microbiol. 2011 Apr 21;11:81. doi: 10.1186/1471-2180-11-81.

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