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Items: 1 to 50 of 76

1.

A Model for the Hippo Pathway in the Drosophila Wing Disc.

Gou J, Lin L, Othmer HG.

Biophys J. 2018 Jul 11. pii: S0006-3495(18)30764-1. doi: 10.1016/j.bpj.2018.07.002. [Epub ahead of print]

2.

Analysis of a model microswimmer with applications to blebbing cells and mini-robots.

Wang Q, Othmer HG.

J Math Biol. 2018 Jun;76(7):1699-1763. doi: 10.1007/s00285-018-1225-y. Epub 2018 Mar 1.

PMID:
29497820
3.

Getting in shape and swimming: the role of cortical forces and membrane heterogeneity in eukaryotic cells.

Wu H, de León MAP, Othmer HG.

J Math Biol. 2018 Feb 26. doi: 10.1007/s00285-018-1223-0. [Epub ahead of print]

PMID:
29480329
4.

Improving Parameter Inference from FRAP Data: an Analysis Motivated by Pattern Formation in the Drosophila Wing Disc.

Lin L, Othmer HG.

Bull Math Biol. 2017 Mar;79(3):448-497. doi: 10.1007/s11538-016-0241-6. Epub 2017 Jan 18.

5.

Obituary: Hans Meinhardt (1938-2016).

Maini PK, Othmer HG, Deutsch A.

Bull Math Biol. 2017 Feb;79(2):383-388. doi: 10.1007/s11538-016-0243-4. Epub 2017 Jan 4. No abstract available.

PMID:
28054166
6.
7.

A multi-time-scale analysis of chemical reaction networks: II. Stochastic systems.

Kan X, Lee CH, Othmer HG.

J Math Biol. 2016 Nov;73(5):1081-1129. Epub 2016 Mar 5.

PMID:
26945582
8.

The performance of discrete models of low Reynolds number swimmers.

Wang Q, Othmer HG.

Math Biosci Eng. 2015 Dec;12(6):1303-20. doi: 10.3934/mbe.2015.12.1303.

PMID:
26775865
9.

Hybrid models of cell and tissue dynamics in tumor growth.

Kim Y, Othmer HG.

Math Biosci Eng. 2015 Dec;12(6):1141-56. doi: 10.3934/mbe.2015.12.1141. Review.

PMID:
26775860
10.

Computational analysis of amoeboid swimming at low Reynolds number.

Wang Q, Othmer HG.

J Math Biol. 2016 Jun;72(7):1893-926. doi: 10.1007/s00285-015-0925-9. Epub 2015 Sep 11.

PMID:
26362281
11.

Constant-complexity stochastic simulation algorithm with optimal binning.

Sanft KR, Othmer HG.

J Chem Phys. 2015 Aug 21;143(7):074108. doi: 10.1063/1.4928635.

12.

A mathematical model of salt-sensitive hypertension: the neurogenic hypothesis.

Averina VA, Othmer HG, Fink GD, Osborn JW.

J Physiol. 2015 Jul 15;593(14):3065-75. doi: 10.1113/jphysiol.2014.278317. Epub 2014 Oct 27. Review.

13.

The role of mathematical models in understanding pattern formation in developmental biology.

Umulis DM, Othmer HG.

Bull Math Biol. 2015 May;77(5):817-45. doi: 10.1007/s11538-014-0019-7. Epub 2014 Oct 4.

14.

Editorial: special issue on stochastic modelling of reaction-diffusion processes in biology.

Erban R, Othmer HG.

Bull Math Biol. 2014 Apr;76(4):761-5. doi: 10.1007/s11538-013-9929-z. No abstract available.

15.

Mechanisms of scaling in pattern formation.

Umulis DM, Othmer HG.

Development. 2013 Dec;140(24):4830-43. doi: 10.1242/dev.100511. Review.

16.

A continuum model of actin waves in Dictyostelium discoideum.

Khamviwath V, Hu J, Othmer HG.

PLoS One. 2013 May 31;8(5):e64272. doi: 10.1371/journal.pone.0064272. Print 2013.

17.

Reply from V. A. Averina, H. G. Othmer, G. D. Fink and J. W. Osborn.

Averina VA, Othmer HG, Fink GD, Osborn JW.

J Physiol. 2013 Jun 1;591(11):2965. doi: 10.1113/jphysiol.2013.254607. No abstract available.

18.

Stochastic analysis of reaction-diffusion processes.

Hu J, Kang HW, Othmer HG.

Bull Math Biol. 2014 Apr;76(4):854-94. doi: 10.1007/s11538-013-9849-y. Epub 2013 May 30.

19.

Excitation and adaptation in bacteria-a model signal transduction system that controls taxis and spatial pattern formation.

Othmer HG, Xin X, Xue C.

Int J Mol Sci. 2013 Apr 26;14(5):9205-48. doi: 10.3390/ijms14059205.

20.

A hybrid model of tumor-stromal interactions in breast cancer.

Kim Y, Othmer HG.

Bull Math Biol. 2013 Aug;75(8):1304-50. doi: 10.1007/s11538-012-9787-0. Epub 2013 Jan 5.

PMID:
23292359
21.

The importance of geometry in mathematical models of developing systems.

Umulis DM, Othmer HG.

Curr Opin Genet Dev. 2012 Dec;22(6):547-52. doi: 10.1016/j.gde.2012.09.007. Epub 2012 Oct 27. Review.

22.

A new conceptual paradigm for the haemodynamics of salt-sensitive hypertension: a mathematical modelling approach.

Averina VA, Othmer HG, Fink GD, Osborn JW.

J Physiol. 2012 Dec 1;590(23):5975-92. doi: 10.1113/jphysiol.2012.228619. Epub 2012 Aug 13.

23.

A "trimer of dimers"-based model for the chemotactic signal transduction network in bacterial chemotaxis.

Xin X, Othmer HG.

Bull Math Biol. 2012 Oct;74(10):2339-82. doi: 10.1007/s11538-012-9756-7. Epub 2012 Aug 4.

24.

The effect of the signalling scheme on the robustness of pattern formation in development.

Kang HW, Zheng L, Othmer HG.

Interface Focus. 2012 Aug 6;2(4):465-86. doi: 10.1098/rsfs.2011.0116. Epub 2012 Mar 21.

25.

Radial and spiral stream formation in Proteus mirabilis colonies.

Xue C, Budrene EO, Othmer HG.

PLoS Comput Biol. 2011 Dec;7(12):e1002332. doi: 10.1371/journal.pcbi.1002332. Epub 2011 Dec 29.

26.

A new method for choosing the computational cell in stochastic reaction-diffusion systems.

Kang HW, Zheng L, Othmer HG.

J Math Biol. 2012 Dec;65(6-7):1017-99. doi: 10.1007/s00285-011-0469-6. Epub 2011 Nov 10.

27.

The role of the microenvironment in tumor growth and invasion.

Kim Y, Stolarska MA, Othmer HG.

Prog Biophys Mol Biol. 2011 Aug;106(2):353-79. doi: 10.1016/j.pbiomolbio.2011.06.006. Epub 2011 Jun 28. Review.

28.

A theoretical analysis of filament length fluctuations in actin and other polymers.

Hu J, Othmer HG.

J Math Biol. 2011 Dec;63(6):1001-49. doi: 10.1007/s00285-010-0400-6. Epub 2011 Jan 14.

29.

Organism-scale modeling of early Drosophila patterning via bone morphogenetic proteins.

Umulis DM, Shimmi O, O'Connor MB, Othmer HG.

Dev Cell. 2010 Feb 16;18(2):260-74. doi: 10.1016/j.devcel.2010.01.006.

30.

The Intersection of Theory and Application in Elucidating Pattern Formation in Developmental Biology.

Othmer HG, Painter K, Umulis D, Xue C.

Math Model Nat Phenom. 2009 Jan 1;4(4):3-82.

31.

Spatiotemporal characteristics of calcium dynamics in astrocytes.

Kang M, Othmer HG.

Chaos. 2009 Sep;19(3):037116. doi: 10.1063/1.3206698.

32.

MULTISCALE MODELS OF TAXIS-DRIVEN PATTERNING IN BACTERIAL POPULATIONS.

Xue C, Othmer HG.

SIAM J Appl Math. 2009;70(1):133-169.

33.

Multi-scale models of cell and tissue dynamics.

Stolarska MA, Kim Y, Othmer HG.

Philos Trans A Math Phys Eng Sci. 2009 Sep 13;367(1902):3525-53. doi: 10.1098/rsta.2009.0095.

34.

A multi-time-scale analysis of chemical reaction networks: I. Deterministic systems.

Lee CH, Othmer HG.

J Math Biol. 2010 Mar;60(3):387-450. doi: 10.1007/s00285-009-0269-4. Epub 2009 Apr 7.

PMID:
19350241
35.

The variety of cytosolic calcium responses and possible roles of PLC and PKC.

Kang M, Othmer HG.

Phys Biol. 2007 Dec 13;4(4):325-43. doi: 10.1088/1478-3975/4/4/009.

PMID:
18185010
36.

Robustness of embryonic spatial patterning in Drosophila melanogaster.

Umulis D, O'Connor MB, Othmer HG.

Curr Top Dev Biol. 2008;81:65-111. Review. No abstract available.

PMID:
18023724
37.

A stochastic analysis of actin polymerization in the presence of twinfilin and gelsolin.

Matzavinos A, Othmer HG.

J Theor Biol. 2007 Dec 21;249(4):723-36. Epub 2007 Aug 28.

PMID:
17931658
38.

The effect of heterogeneously-distributed RyR channels on calcium dynamics in cardiac myocytes.

Spiro PA, Othmer HG.

Bull Math Biol. 1999 Jul;61(4):651-81.

PMID:
17883219
39.

Taxis equations for amoeboid cells.

Erban R, Othmer HG.

J Math Biol. 2007 Jun;54(6):847-85. Epub 2007 Feb 2.

PMID:
17273880
40.

Robust, bistable patterning of the dorsal surface of the Drosophila embryo.

Umulis DM, Serpe M, O'Connor MB, Othmer HG.

Proc Natl Acad Sci U S A. 2006 Aug 1;103(31):11613-8. Epub 2006 Jul 24.

41.

A model for a G-protein-mediated mechanism for synaptic channel modulation.

Soto G, Othmer HG.

Math Biosci. 2006 Apr;200(2):188-213. Epub 2006 Mar 15.

PMID:
16540128
42.

Shaping BMP morphogen gradients in the Drosophila embryo and pupal wing.

O'Connor MB, Umulis D, Othmer HG, Blair SS.

Development. 2006 Jan;133(2):183-93. Review.

43.

A stochastic analysis of first-order reaction networks.

Gadgil C, Lee CH, Othmer HG.

Bull Math Biol. 2005 Sep;67(5):901-46. Epub 2005 Jan 19.

PMID:
15998488
44.
45.

Mathematical modeling of tumor-induced angiogenesis.

Mantzaris NV, Webb S, Othmer HG.

J Math Biol. 2004 Aug;49(2):111-87. Epub 2004 Feb 6. Review. No abstract available.

PMID:
15293017
46.
47.

A continuum model of motility in ameboid cells.

Gracheva ME, Othmer HG.

Bull Math Biol. 2004 Jan;66(1):167-93.

PMID:
14670535
48.

Short- and long-range effects of Sonic hedgehog in limb development.

Dillon R, Gadgil C, Othmer HG.

Proc Natl Acad Sci U S A. 2003 Sep 2;100(18):10152-7. Epub 2003 Aug 20.

50.

Development and applications of a model for cellular response to multiple chemotactic cues.

Painter KJ, Maini PK, Othmer HG.

J Math Biol. 2000 Oct;41(4):285-314.

PMID:
11103868

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