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Items: 47

1.

Influence of the spacer region between the Shine-Dalgarno box and the start codon for fine-tuning of the translation efficiency in Escherichia coli.

Komarova ES, Chervontseva ZS, Osterman IA, Evfratov SA, Rubtsova MP, Zatsepin TS, Semashko TA, Kostryukova ES, Bogdanov AA, Gelfand MS, Dontsova OA, Sergiev PV.

Microb Biotechnol. 2020 Mar 23. doi: 10.1111/1751-7915.13561. [Epub ahead of print]

2.

Erratum for Khabibullina et al., "Structure of Dirithromycin Bound to the Bacterial Ribosome Suggests New Ways for Rational Improvement of Macrolides".

Khabibullina NF, Tereshchenkov AG, Komarova ES, Syroegin EA, Shiriaev DI, Paleskava A, Kartsev VG, Bogdanov AA, Konevega AL, Dontsova OA, Sergiev PV, Osterman IA, Polikanov YS.

Antimicrob Agents Chemother. 2020 Jan 27;64(2). pii: e02360-19. doi: 10.1128/AAC.02360-19. Print 2020 Jan 27. No abstract available.

3.

Exploitation of Potentially New Antibiotics from Mangrove Actinobacteria in Maowei Sea by Combination of Multiple Discovery Strategies.

Lu QP, Ye JJ, Huang YM, Liu D, Liu LF, Dong K, Razumova EA, Osterman IA, Sergiev PV, Dontsova OA, Jia SH, Huang DL, Sun CH.

Antibiotics (Basel). 2019 Nov 27;8(4). pii: E236. doi: 10.3390/antibiotics8040236.

4.

Structure of ribosome-bound azole-modified peptide phazolicin rationalizes its species-specific mode of bacterial translation inhibition.

Travin DY, Watson ZL, Metelev M, Ward FR, Osterman IA, Khven IM, Khabibullina NF, Serebryakova M, Mergaert P, Polikanov YS, Cate JHD, Severinov K.

Nat Commun. 2019 Oct 8;10(1):4563. doi: 10.1038/s41467-019-12589-5.

5.

Substituted Furanocoumarins as Novel Class of Antibacterial Translation Inhibitors.

Ivanenkov YA, Yamidanov RS, Osterman IA, Sergiev PV, Ayginin AA, Aladinskiy VA, Aladinskaya AV, Terentiev VA, Veselov MS, Skvortsov DA, Komarova KS, Chemeris AV, Zainullina LF, Maximova MA, Zileeva ZR, Vakhitova YV, Baymiev AK, Baymiev AK, Sofronova AA, Machulkin AE, Petrov RA, Bezrukov DS, Puchinina MM, Lukianov DA, Dontsova OA.

Comb Chem High Throughput Screen. 2019;22(6):400-410. doi: 10.2174/1386207322666190723110539.

PMID:
31573876
6.

Oligoglutamylation of E. coli ribosomal protein S6 is under growth phase control.

Pletnev PI, Nesterchuk MV, Rubtsova MP, Serebryakova MV, Dmitrieva K, Osterman IA, Bogdanov AA, Sergiev PV.

Biochimie. 2019 Dec;167:61-67. doi: 10.1016/j.biochi.2019.09.008. Epub 2019 Sep 11.

PMID:
31520657
7.

Identification of Novel Antibacterials Using Machine Learning Techniques.

Ivanenkov YA, Zhavoronkov A, Yamidanov RS, Osterman IA, Sergiev PV, Aladinskiy VA, Aladinskaya AV, Terentiev VA, Veselov MS, Ayginin AA, Kartsev VG, Skvortsov DA, Chemeris AV, Baimiev AK, Sofronova AA, Malyshev AS, Filkov GI, Bezrukov DS, Zagribelnyy BA, Putin EO, Puchinina MM, Dontsova OA.

Front Pharmacol. 2019 Aug 27;10:913. doi: 10.3389/fphar.2019.00913. eCollection 2019.

8.

2-Pyrazol-1-yl-thiazole derivatives as novel highly potent antibacterials.

Ivanenkov YA, Yamidanov RS, Osterman IA, Sergiev PV, Aladinskiy VA, Aladinskaya AV, Terentiev VA, Veselov MS, Ayginin AA, Skvortsov DA, Komarova KS, Sadovnikov SV, Matniyazov R, Sofronova AA, Malyshev AS, Machulkin AE, Petrov RA, Lukianov D, Iarovenko S, Bezrukov DS, Baymiev AK, Dontsova OA.

J Antibiot (Tokyo). 2019 Nov;72(11):827-833. doi: 10.1038/s41429-019-0211-y. Epub 2019 Jul 29.

PMID:
31358913
9.

Studies on Antibacterial Activity and Diversity of Cultivable Actinobacteria Isolated from Mangrove Soil in Futian and Maoweihai of China.

Li F, Liu S, Lu Q, Zheng H, Osterman IA, Lukyanov DA, Sergiev PV, Dontsova OA, Liu S, Ye J, Huang D, Sun C.

Evid Based Complement Alternat Med. 2019 Jun 9;2019:3476567. doi: 10.1155/2019/3476567. eCollection 2019.

10.

Large-scale high-throughput screening revealed 5'-(carbonylamino)-2,3'-bithiophene-4'-carboxylate as novel template for antibacterial agents.

Ivanenkov YA, Yamidanov RS, Osterman IA, Sergiev PV, Aladinskiy VA, Aladinskaya AV, Terentiev VA, Veselov MS, Ayginin AA, Skvortsov DA, Komarova KS, Zagribelnyy BA, Baimiev AK, Shvetc KY, Baimiev AK, Sofronova AA, Machulkin AE, Petrov RA, Zainullina LF, Maximova MA, Zileeva ZR, Vakhitova YV, Bezrukov DS, Puchinina MM, Dontsova OA.

Curr Drug Discov Technol. 2019 Jun 2. doi: 10.2174/1570163816666190603095521. [Epub ahead of print]

PMID:
31161993
11.

eIF4G2 balances its own mRNA translation via a PCBP2-based feedback loop.

Smirnova VV, Shestakova ED, Bikmetov DV, Chugunova AA, Osterman IA, Serebryakova MV, Sergeeva OV, Zatsepin TS, Shatsky IN, Terenin IM.

RNA. 2019 Jul;25(7):757-767. doi: 10.1261/rna.065623.118. Epub 2019 Apr 22.

PMID:
31010886
12.

Identification of N-Substituted Triazolo-azetidines as Novel Antibacterials using pDualrep2 HTS Platform.

Ivanenkov YA, Yamidanov RS, Osterman IA, Sergiev PV, Aladinskiy VA, Aladinskaya AV, Terentiev VA, Veselov MS, Ayginin AA, Skvortsov DA, Komarova KS, Chemeris AV, Baimiev AK, Sofronova AA, Malyshev AS, Machulkin AE, Petrov RA, Bezrukov DS, Filkov GI, Puchinina MM, Zainullina LF, Maximova MA, Zileeva ZR, Vakhitova YV, Dontsova OA.

Comb Chem High Throughput Screen. 2019 Aug 8;22(5):346-354. doi: 10.2174/1386207322666190412165316.

PMID:
30987560
13.

Identification of pyrrolo-pyridine derivatives as novel class of antibacterials.

Veselov MS, Ivanenkov YA, Yamidanov RS, Osterman IA, Sergiev PV, Aladinskiy VA, Aladinskaya AV, Terentiev VA, Ayginin AA, Skvortsov DA, Komarova KS, Chemeris AV, Baimiev AK, Sofronova AA, Machulkin AE, Petrov RA, Maklakova SY, Bezrukov DS, Filkov GI, Zainullina LF, Maximova MA, Zileeva ZR, Kartsev VG, Vakhitova YV, Dontsova OA.

Mol Divers. 2020 Feb;24(1):233-239. doi: 10.1007/s11030-019-09946-3. Epub 2019 Apr 4.

PMID:
30949901
14.

Structure of Dirithromycin Bound to the Bacterial Ribosome Suggests New Ways for Rational Improvement of Macrolides.

Khabibullina NF, Tereshchenkov AG, Komarova ES, Syroegin EA, Shiriaev DI, Paleskava A, Kartsev VG, Bogdanov AA, Konevega AL, Dontsova OA, Sergiev PV, Osterman IA, Polikanov YS.

Antimicrob Agents Chemother. 2019 May 24;63(6). pii: e02266-18. doi: 10.1128/AAC.02266-18. Print 2019 Jun. Erratum in: Antimicrob Agents Chemother. 2020 Jan 27;64(2):.

15.

Nybomycin-producing Streptomyces isolated from carpenter ant Camponotus vagus.

Zakalyukina YV, Birykov MV, Lukianov DA, Shiriaev DI, Komarova ES, Skvortsov DA, Kostyukevich Y, Tashlitsky VN, Polshakov VI, Nikolaev E, Sergiev PV, Osterman IA.

Biochimie. 2019 May;160:93-99. doi: 10.1016/j.biochi.2019.02.010. Epub 2019 Feb 21.

PMID:
30797881
16.

Synthesis and evaluation of biological activity for dual-acting antibiotics on the basis of azithromycin and glycopeptides.

Tevyashova AN, Bychkova EN, Korolev AM, Isakova EB, Mirchink EP, Osterman IA, Erdei R, Szücs Z, Batta G.

Bioorg Med Chem Lett. 2019 Jan 15;29(2):276-280. doi: 10.1016/j.bmcl.2018.11.038. Epub 2018 Nov 20.

PMID:
30473176
17.

High-Throughput Screening of Biodiversity for Antibiotic Discovery.

Terekhov SS, Osterman IA, Smirnov IV.

Acta Naturae. 2018 Jul-Sep;10(3):23-29.

18.

Synthesis and evaluation of biological activity of benzoxaborole derivatives of azithromycin.

Tevyashova AN, Korolev AM, Mirchink EP, Isakova EB, Osterman IA.

J Antibiot (Tokyo). 2019 Jan;72(1):22-33. doi: 10.1038/s41429-018-0107-2. Epub 2018 Oct 12.

PMID:
30315257
19.

Ultrahigh-throughput functional profiling of microbiota communities.

Terekhov SS, Smirnov IV, Malakhova MV, Samoilov AE, Manolov AI, Nazarov AS, Danilov DV, Dubiley SA, Osterman IA, Rubtsova MP, Kostryukova ES, Ziganshin RH, Kornienko MA, Vanyushkina AA, Bukato ON, Ilina EN, Vlasov VV, Severinov KV, Gabibov AG, Altman S.

Proc Natl Acad Sci U S A. 2018 Sep 18;115(38):9551-9556. doi: 10.1073/pnas.1811250115. Epub 2018 Sep 4.

20.

NMR assignments of the WBSCR27 protein related to Williams-Beuren syndrome.

Mariasina SS, Petrova OA, Osterman IA, Sergeeva OV, Efimov SV, Klochkov VV, Sergiev PV, Dontsova OA, Huang TH, Chang CF, Polshakov VI.

Biomol NMR Assign. 2018 Oct;12(2):303-308. doi: 10.1007/s12104-018-9827-2. Epub 2018 Jun 4.

PMID:
29868988
21.

Diversity, Novelty, and Antimicrobial Activity of Endophytic Actinobacteria From Mangrove Plants in Beilun Estuary National Nature Reserve of Guangxi, China.

Jiang ZK, Tuo L, Huang DL, Osterman IA, Tyurin AP, Liu SW, Lukyanov DA, Sergiev PV, Dontsova OA, Korshun VA, Li FN, Sun CH.

Front Microbiol. 2018 May 4;9:868. doi: 10.3389/fmicb.2018.00868. eCollection 2018.

22.

Biosynthesis of Translation Inhibitor Klebsazolicin Proceeds through Heterocyclization and N-Terminal Amidine Formation Catalyzed by a Single YcaO Enzyme.

Travin DY, Metelev M, Serebryakova M, Komarova ES, Osterman IA, Ghilarov D, Severinov K.

J Am Chem Soc. 2018 Apr 25;140(16):5625-5633. doi: 10.1021/jacs.8b02277. Epub 2018 Apr 11.

PMID:
29601195
23.

Binding and Action of Amino Acid Analogs of Chloramphenicol upon the Bacterial Ribosome.

Tereshchenkov AG, Dobosz-Bartoszek M, Osterman IA, Marks J, Sergeeva VA, Kasatsky P, Komarova ES, Stavrianidi AN, Rodin IA, Konevega AL, Sergiev PV, Sumbatyan NV, Mankin AS, Bogdanov AA, Polikanov YS.

J Mol Biol. 2018 Mar 16;430(6):842-852. doi: 10.1016/j.jmb.2018.01.016. Epub 2018 Feb 2.

24.

Klebsazolicin inhibits 70S ribosome by obstructing the peptide exit tunnel.

Metelev M, Osterman IA, Ghilarov D, Khabibullina NF, Yakimov A, Shabalin K, Utkina I, Travin DY, Komarova ES, Serebryakova M, Artamonova T, Khodorkovskii M, Konevega AL, Sergiev PV, Severinov K, Polikanov YS.

Nat Chem Biol. 2017 Oct;13(10):1129-1136. doi: 10.1038/nchembio.2462. Epub 2017 Aug 28.

25.

Madumycin II inhibits peptide bond formation by forcing the peptidyl transferase center into an inactive state.

Osterman IA, Khabibullina NF, Komarova ES, Kasatsky P, Kartsev VG, Bogdanov AA, Dontsova OA, Konevega AL, Sergiev PV, Polikanov YS.

Nucleic Acids Res. 2017 Jul 7;45(12):7507-7514. doi: 10.1093/nar/gkx413.

26.

Mitochondria-targeted antioxidants as highly effective antibiotics.

Nazarov PA, Osterman IA, Tokarchuk AV, Karakozova MV, Korshunova GA, Lyamzaev KG, Skulachev MV, Kotova EA, Skulachev VP, Antonenko YN.

Sci Rep. 2017 May 3;7(1):1394. doi: 10.1038/s41598-017-00802-8.

27.

2-Guanidino-quinazolines as a novel class of translation inhibitors.

Komarova Andreyanova ES, Osterman IA, Pletnev PI, Ivanenkov YA, Majouga AG, Bogdanov AA, Sergiev PV.

Biochimie. 2017 Feb;133:45-55. doi: 10.1016/j.biochi.2016.11.008. Epub 2016 Dec 21.

PMID:
28011211
28.

Application of sorting and next generation sequencing to study 5΄-UTR influence on translation efficiency in Escherichia coli.

Evfratov SA, Osterman IA, Komarova ES, Pogorelskaya AM, Rubtsova MP, Zatsepin TS, Semashko TA, Kostryukova ES, Mironov AA, Burnaev E, Krymova E, Gelfand MS, Govorun VM, Bogdanov AA, Sergiev PV, Dontsova OA.

Nucleic Acids Res. 2017 Apr 7;45(6):3487-3502. doi: 10.1093/nar/gkw1141.

29.

Sorting Out Antibiotics' Mechanisms of Action: a Double Fluorescent Protein Reporter for High-Throughput Screening of Ribosome and DNA Biosynthesis Inhibitors.

Osterman IA, Komarova ES, Shiryaev DI, Korniltsev IA, Khven IM, Lukyanov DA, Tashlitsky VN, Serebryakova MV, Efremenkova OV, Ivanenkov YA, Bogdanov AA, Sergiev PV, Dontsova OA.

Antimicrob Agents Chemother. 2016 Nov 21;60(12):7481-7489. Print 2016 Dec.

30.

Techniques for Screening Translation Inhibitors.

Osterman IA, Bogdanov AA, Dontsova OA, Sergiev PV.

Antibiotics (Basel). 2016 Jun 24;5(3). pii: E22. doi: 10.3390/antibiotics5030022. Review.

31.

Amicoumacin A induces cancer cell death by targeting the eukaryotic ribosome.

Prokhorova IV, Akulich KA, Makeeva DS, Osterman IA, Skvortsov DA, Sergiev PV, Dontsova OA, Yusupova G, Yusupov MM, Dmitriev SE.

Sci Rep. 2016 Jun 14;6:27720. doi: 10.1038/srep27720.

32.

[Application of reporter strains for new antibiotic screening].

Sergiev PV, Osterman IA, Golovina AY, Laptev IG, Pletnev PI, Evfratov SA, Marusich EI, Leonov SV, Ivanenkov YA, Bogdanov AA, Dontsova OA.

Biomed Khim. 2016 Mar-Apr;62(2):117-23. doi: 10.18097/PBMC20166202117. Review. Russian.

PMID:
27143367
33.

[Common features of antibacterial compounds: an analysis of 104 compounds library].

Veselov MS, Sergiev PV, Osterman IA, Skvortsov DA, Golovina AY, Andreyanova ES, Laptev IG, Pletnev PI, Evfratov SA, Marusich EI, Leonov SV, Ivanenkov YA, Bogdanov AA, Dontsova OA.

Biomed Khim. 2015 Nov-Dec;61(6):785-90. doi: 10.18097/PBMC20156106785. Russian.

PMID:
26716754
34.

N6-Methylated Adenosine in RNA: From Bacteria to Humans.

Sergiev PV, Golovina AY, Osterman IA, Nesterchuk MV, Sergeeva OV, Chugunova AA, Evfratov SA, Andreianova ES, Pletnev PI, Laptev IG, Petriukov KS, Navalayeu TI, Koteliansky VE, Bogdanov AA, Dontsova OA.

J Mol Biol. 2016 May 22;428(10 Pt B):2134-45. doi: 10.1016/j.jmb.2015.12.013. Epub 2015 Dec 19. Review.

PMID:
26707202
35.

Regulation of Flagellar Gene Expression in Bacteria.

Osterman IA, Dikhtyar YY, Bogdanov AA, Dontsova OA, Sergiev PV.

Biochemistry (Mosc). 2015 Nov;80(11):1447-56. doi: 10.1134/S000629791511005X. Review.

PMID:
26615435
36.

A bacterial homolog YciH of eukaryotic translation initiation factor eIF1 regulates stress-related gene expression and is unlikely to be involved in translation initiation fidelity.

Osterman IA, Evfratov SA, Dzama MM, Pletnev PI, Kovalchuk SI, Butenko IO, Pobeguts OV, Golovina AY, Govorun VM, Bogdanov AA, Sergiev PV, Dontsova OA.

RNA Biol. 2015;12(9):966-71. doi: 10.1080/15476286.2015.1069464.

37.

Amicoumacin a inhibits translation by stabilizing mRNA interaction with the ribosome.

Polikanov YS, Osterman IA, Szal T, Tashlitsky VN, Serebryakova MV, Kusochek P, Bulkley D, Malanicheva IA, Efimenko TA, Efremenkova OV, Konevega AL, Shaw KJ, Bogdanov AA, Rodnina MV, Dontsova OA, Mankin AS, Steitz TA, Sergiev PV.

Mol Cell. 2014 Nov 20;56(4):531-40. doi: 10.1016/j.molcel.2014.09.020. Epub 2014 Oct 9.

38.

Ribosome-controlled transcription termination is essential for the production of antibiotic microcin C.

Zukher I, Novikova M, Tikhonov A, Nesterchuk MV, Osterman IA, Djordjevic M, Sergiev PV, Sharma CM, Severinov K.

Nucleic Acids Res. 2014 Oct 29;42(19):11891-902. doi: 10.1093/nar/gku880. Epub 2014 Oct 1.

39.

Modified nucleotides m(2)G966/m(5)C967 of Escherichia coli 16S rRNA are required for attenuation of tryptophan operon.

Prokhorova IV, Osterman IA, Burakovsky DE, Serebryakova MV, Galyamina MA, Pobeguts OV, Altukhov I, Kovalchuk S, Alexeev DG, Govorun VM, Bogdanov AA, Sergiev PV, Dontsova OA.

Sci Rep. 2013 Nov 18;3:3236. doi: 10.1038/srep03236.

40.

Investigation of activity of recombinant mengovirus RNA-dependent RNA polymerase and its mutants.

Shatskaya GS, Drutsa VL, Koroleva ON, Osterman IA, Dmitrieva TM.

Biochemistry (Mosc). 2013 Jan;78(1):96-101. doi: 10.1134/S0006297913010124.

PMID:
23379565
41.

A nascent proteome study combining click chemistry with 2DE.

Osterman IA, Ustinov AV, Evdokimov DV, Korshun VA, Sergiev PV, Serebryakova MV, Demina IA, Galyamina MA, Govorun VM, Dontsova OA.

Proteomics. 2013 Jan;13(1):17-21. doi: 10.1002/pmic.201200393. Epub 2012 Dec 15.

PMID:
23161590
42.

Comparison of mRNA features affecting translation initiation and reinitiation.

Osterman IA, Evfratov SA, Sergiev PV, Dontsova OA.

Nucleic Acids Res. 2013 Jan 7;41(1):474-86. doi: 10.1093/nar/gks989. Epub 2012 Oct 23.

43.

The last rRNA methyltransferase of E. coli revealed: the yhiR gene encodes adenine-N6 methyltransferase specific for modification of A2030 of 23S ribosomal RNA.

Golovina AY, Dzama MM, Osterman IA, Sergiev PV, Serebryakova MV, Bogdanov AA, Dontsova OA.

RNA. 2012 Sep;18(9):1725-34. doi: 10.1261/rna.034207.112. Epub 2012 Jul 30.

44.

How much can we learn about the function of bacterial rRNA modification by mining large-scale experimental datasets?

Sergiev PV, Golovina AY, Sergeeva OV, Osterman IA, Nesterchuk MV, Bogdanov AA, Dontsova OA.

Nucleic Acids Res. 2012 Jul;40(12):5694-705. doi: 10.1093/nar/gks219. Epub 2012 Mar 12.

45.

Attenuation-based dual-fluorescent-protein reporter for screening translation inhibitors.

Osterman IA, Prokhorova IV, Sysoev VO, Boykova YV, Efremenkova OV, Svetlov MS, Kolb VA, Bogdanov AA, Sergiev PV, Dontsova OA.

Antimicrob Agents Chemother. 2012 Apr;56(4):1774-83. doi: 10.1128/AAC.05395-11. Epub 2012 Jan 17.

46.

[Systems biology approach to the functional role of enzymatic modification of bacterial ribosome].

Sergiev PV, Osterman IA, Prokhorova IV, Nesterchuk MV, Sergeeva OV, Golovina AIa, Demina IA, Galiamina MA, Serebriakova MV, Dontsova OA.

Bioorg Khim. 2011 Jan-Feb;37(1):81-90. Russian.

PMID:
21460884
47.

Methylated 23S rRNA nucleotide m2G1835 of Escherichia coli ribosome facilitates subunit association.

Osterman IA, Sergiev PV, Tsvetkov PO, Makarov AA, Bogdanov AA, Dontsova OA.

Biochimie. 2011 Apr;93(4):725-9. doi: 10.1016/j.biochi.2010.12.016. Epub 2011 Jan 13.

PMID:
21237242

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