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Items: 13

1.

A novel sequencing-based vaginal health assay combining self-sampling, HPV detection and genotyping, STI detection, and vaginal microbiome analysis.

Bik EM, Bird SW, Bustamante JP, Leon LE, Nieto PA, Addae K, Alegría-Mera V, Bravo C, Bravo D, Cardenas JP, Carson GA, Caughey A, Covarrubias PC, Pérez-Donoso J, Gass G, Gupta SL, Harman K, Hongo DMB, Jiménez JC, Kraal L, Melis-Arcos F, Morales EH, Morton A, Navas CF, Nuñez H, Olivares E, Órdenes-Aenishanslins N, Ossandon FJ, Phan R, Pino R, Soto-Liebe K, Varas I, Vera-Wolf P, Walton NA, Almonacid DE, Goddard AD, Ugalde JA, Zneimer S, Richman J, Apte ZS.

PLoS One. 2019 May 1;14(5):e0215945. doi: 10.1371/journal.pone.0215945. eCollection 2019.

2.

Correction: 16S rRNA gene sequencing and healthy reference ranges for 28 clinically relevant microbial taxa from the human gut microbiome.

Almonacid DE, Kraal L, Ossandon FJ, Budovskaya YV, Cardenas JP, Bik EM, Goddard AD, Richman J, Apte ZS.

PLoS One. 2019 Feb 12;14(2):e0212474. doi: 10.1371/journal.pone.0212474. eCollection 2019.

3.

16S rRNA gene sequencing and healthy reference ranges for 28 clinically relevant microbial taxa from the human gut microbiome.

Almonacid DE, Kraal L, Ossandon FJ, Budovskaya YV, Cardenas JP, Bik EM, Goddard AD, Richman J, Apte ZS.

PLoS One. 2017 May 3;12(5):e0176555. doi: 10.1371/journal.pone.0176555. eCollection 2017. Erratum in: PLoS One. 2019 Feb 12;14(2):e0212474.

4.

Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile.

Issotta F, Galleguillos PA, Moya-Beltrán A, Davis-Belmar CS, Rautenbach G, Covarrubias PC, Acosta M, Ossandon FJ, Contador Y, Holmes DS, Marín-Eliantonio S, Quatrini R, Demergasso C.

Stand Genomic Sci. 2016 Feb 27;11:19. doi: 10.1186/s40793-016-0142-1. eCollection 2016.

5.

Genome Analysis of the Biotechnologically Relevant Acidophilic Iron Oxidising Strain JA12 Indicates Phylogenetic and Metabolic Diversity within the Novel Genus "Ferrovum".

Ullrich SR, Poehlein A, Tischler JS, González C, Ossandon FJ, Daniel R, Holmes DS, Schlömann M, Mühling M.

PLoS One. 2016 Jan 25;11(1):e0146832. doi: 10.1371/journal.pone.0146832. eCollection 2016.

6.

Metagenomic analysis reveals adaptations to a cold-adapted lifestyle in a low-temperature acid mine drainage stream.

Liljeqvist M, Ossandon FJ, González C, Rajan S, Stell A, Valdes J, Holmes DS, Dopson M.

FEMS Microbiol Ecol. 2015 Apr;91(4). pii: fiv011. doi: 10.1093/femsec/fiv011. Epub 2015 Jan 27.

PMID:
25764459
7.

Draft Genome Sequence of the Iron-Oxidizing Acidophile Leptospirillum ferriphilum Type Strain DSM 14647.

Cárdenas JP, Lazcano M, Ossandon FJ, Corbett M, Holmes DS, Watkin E.

Genome Announc. 2014 Nov 6;2(6). pii: e01153-14. doi: 10.1128/genomeA.01153-14.

8.

Draft Genome Sequence of the Iron-Oxidizing, Acidophilic, and Halotolerant "Thiobacillus prosperus" Type Strain DSM 5130.

Ossandon FJ, Cárdenas JP, Corbett M, Quatrini R, Holmes DS, Watkin E.

Genome Announc. 2014 Oct 23;2(5). pii: e01042-14. doi: 10.1128/genomeA.01042-14.

9.

Draft Genome Sequence of the Nominated Type Strain of "Ferrovum myxofaciens," an Acidophilic, Iron-Oxidizing Betaproteobacterium.

Moya-Beltrán A, Cárdenas JP, Covarrubias PC, Issotta F, Ossandon FJ, Grail BM, Holmes DS, Quatrini R, Johnson DB.

Genome Announc. 2014 Aug 21;2(4). pii: e00834-14. doi: 10.1128/genomeA.00834-14.

10.

Metal resistance or tolerance? Acidophiles confront high metal loads via both abiotic and biotic mechanisms.

Dopson M, Ossandon FJ, Lövgren L, Holmes DS.

Front Microbiol. 2014 Apr 9;5:157. doi: 10.3389/fmicb.2014.00157. eCollection 2014.

11.

Analysis of the intronic single nucleotide polymorphism rs#466452 of the nephrin gene in patients with diabetic nephropathy.

González R, Tirado A, Rojas LA, Ossandón FJ, Alvo M, Wolff C, Seelenfreund D, Durruty P, Lobos S.

Biol Res. 2009;42(2):189-98. doi: /S0716-97602009000200007. Epub 2009 Aug 20.

12.

Reprimo as a potential biomarker for early detection in gastric cancer.

Bernal C, Aguayo F, Villarroel C, Vargas M, Díaz I, Ossandon FJ, Santibáñez E, Palma M, Aravena E, Barrientos C, Corvalan AH.

Clin Cancer Res. 2008 Oct 1;14(19):6264-9. doi: 10.1158/1078-0432.CCR-07-4522.

13.

In silico analysis of gastric carcinoma Serial Analysis of Gene Expression libraries reveals different profiles associated with ethnicity.

Ossandon FJ, Villarroel C, Aguayo F, Santibanez E, Oue N, Yasui W, Corvalan AH.

Mol Cancer. 2008 Feb 27;7:22. doi: 10.1186/1476-4598-7-22.

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