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Items: 40

1.

Thiocyanate Degradation by a Highly Enriched Culture of the Neutrophilic Halophile Thiohalobacter thiocyanaticus FOKN1 from Activated Sludge and Genomic Insights into Thiocyanate Metabolism.

Oshiki M, Fukushima T, Kawano S, Kasahara Y, Nakagawa J.

Microbes Environ. 2019 Oct 19. doi: 10.1264/jsme2.ME19068. [Epub ahead of print]

2.

Temporal variation of eukaryotic community structures in UASB reactor treating domestic sewage as revealed by 18S rRNA gene sequencing.

Hirakata Y, Hatamoto M, Oshiki M, Watari T, Kuroda K, Araki N, Yamaguchi T.

Sci Rep. 2019 Sep 4;9(1):12783. doi: 10.1038/s41598-019-49290-y.

3.

Dual nitrogen and oxygen isotope fractionation during anaerobic ammonium oxidation by anammox bacteria.

Kobayashi K, Makabe A, Yano M, Oshiki M, Kindaichi T, Casciotti KL, Okabe S.

ISME J. 2019 Oct;13(10):2426-2436. doi: 10.1038/s41396-019-0440-x. Epub 2019 May 28.

PMID:
31138875
4.

Nitric Oxide Production from Nitrite Reduction and Hydroxylamine Oxidation by Copper-containing Dissimilatory Nitrite Reductase (NirK) from the Aerobic Ammonia-oxidizing Archaeon, Nitrososphaera viennensis.

Kobayashi S, Hira D, Yoshida K, Toyofuku M, Shida Y, Ogasawara W, Yamaguchi T, Araki N, Oshiki M.

Microbes Environ. 2018 Dec 28;33(4):428-434. doi: 10.1264/jsme2.ME18058. Epub 2018 Oct 12.

5.

Synergistic inhibition of anaerobic ammonium oxidation (anammox) activity by phenol and thiocyanate.

Oshiki M, Masuda Y, Yamaguchi T, Araki N.

Chemosphere. 2018 Dec;213:498-506. doi: 10.1016/j.chemosphere.2018.09.055. Epub 2018 Sep 10.

PMID:
30245226
6.

Microfluidic PCR Amplification and MiSeq Amplicon Sequencing Techniques for High-Throughput Detection and Genotyping of Human Pathogenic RNA Viruses in Human Feces, Sewage, and Oysters.

Oshiki M, Miura T, Kazama S, Segawa T, Ishii S, Hatamoto M, Yamaguchi T, Kubota K, Iguchi A, Tagawa T, Okubo T, Uemura S, Harada H, Kobayashi N, Araki N, Sano D.

Front Microbiol. 2018 Apr 27;9:830. doi: 10.3389/fmicb.2018.00830. eCollection 2018.

7.

Ureolytic Prokaryotes in Soil: Community Abundance and Diversity.

Oshiki M, Araki M, Hirakata Y, Hatamoto M, Yamaguchi T, Araki N.

Microbes Environ. 2018 Jul 4;33(2):230-233. doi: 10.1264/jsme2.ME17188. Epub 2018 Apr 28.

8.

Experimental Evidence for in Situ Nitric Oxide Production in Anaerobic Ammonia-Oxidizing Bacterial Granules.

Rathnayake RMLD, Oshiki M, Ishii S, Segawa T, Satoh H, Okabe S.

Environ Sci Technol. 2018 May 15;52(10):5744-5752. doi: 10.1021/acs.est.8b00876. Epub 2018 Apr 30.

PMID:
29678110
9.

Nitrogen Cycle Evaluation (NiCE) Chip for Simultaneous Analysis of Multiple N Cycle-Associated Genes.

Oshiki M, Segawa T, Ishii S.

Appl Environ Microbiol. 2018 Apr 2;84(8). pii: e02615-17. doi: 10.1128/AEM.02615-17. Print 2018 Apr 15.

10.

Genetic diversity of marine anaerobic ammonium-oxidizing bacteria as revealed by genomic and proteomic analyses of 'Candidatus Scalindua japonica'.

Oshiki M, Mizuto K, Kimura ZI, Kindaichi T, Satoh H, Okabe S.

Environ Microbiol Rep. 2017 Oct;9(5):550-561. doi: 10.1111/1758-2229.12586. Epub 2017 Oct 6.

PMID:
28892310
11.

Microbial competition among anammox bacteria in nitrite-limited bioreactors.

Zhang L, Narita Y, Gao L, Ali M, Oshiki M, Ishii S, Okabe S.

Water Res. 2017 Nov 15;125:249-258. doi: 10.1016/j.watres.2017.08.052. Epub 2017 Aug 26.

PMID:
28865374
12.

Draft Genome Sequence of Thiohalobacter thiocyanaticus Strain FOKN1, a Neutrophilic Halophile Capable of Thiocyanate Degradation.

Oshiki M, Fukushima T, Kawano S, Nakagawa J.

Genome Announc. 2017 Aug 10;5(32). pii: e00799-17. doi: 10.1128/genomeA.00799-17.

13.

Improvement of a Phosphate Ion-selective Microsensor Using Bis(dibromophenylstannyl)methane as a Carrier.

Satoh H, Miyazaki Y, Taniuchi S, Oshiki M, Rathnayake RMLD, Takahashi M, Okabe S.

Anal Sci. 2017;33(7):825-830. doi: 10.2116/analsci.33.825.

14.

Maximum specific growth rate of anammox bacteria revisited.

Zhang L, Narita Y, Gao L, Ali M, Oshiki M, Okabe S.

Water Res. 2017 Jun 1;116:296-303. doi: 10.1016/j.watres.2017.03.027. Epub 2017 Mar 14.

PMID:
28347953
15.

Removal of human pathogenic viruses in a down-flow hanging sponge (DHS) reactor treating municipal wastewater and health risks associated with utilization of the effluent for agricultural irrigation.

Kobayashi N, Oshiki M, Ito T, Segawa T, Hatamoto M, Kato T, Yamaguchi T, Kubota K, Takahashi M, Iguchi A, Tagawa T, Okubo T, Uemura S, Harada H, Motoyama T, Araki N, Sano D.

Water Res. 2017 Mar 1;110:389-398. doi: 10.1016/j.watres.2016.10.054. Epub 2016 Oct 22.

PMID:
28038763
16.

High-cell-density cultivation of Nitrosomonas europaea in a membrane bioreactor for performing protein purification and characterization studies.

Oshiki M, Takagi R, Hatamoto M, Yamaguchi T, Araki N.

J Gen Appl Microbiol. 2017 Jan 25;62(6):330-333. doi: 10.2323/jgam.2016.05.003. Epub 2016 Oct 21. No abstract available.

17.

Effects of Predation by Protists on Prokaryotic Community Function, Structure, and Diversity in Anaerobic Granular Sludge.

Hirakata Y, Oshiki M, Kuroda K, Hatamoto M, Kubota K, Yamaguchi T, Harada H, Araki N.

Microbes Environ. 2016 Sep 29;31(3):279-87. doi: 10.1264/jsme2.ME16067. Epub 2016 Jul 12.

18.

Hydroxylamine-dependent anaerobic ammonium oxidation (anammox) by "Candidatus Brocadia sinica".

Oshiki M, Ali M, Shinyako-Hata K, Satoh H, Okabe S.

Environ Microbiol. 2016 Sep;18(9):3133-43. doi: 10.1111/1462-2920.13355. Epub 2016 Jun 3.

PMID:
27112128
19.

Identification and Detection of Prokaryotic Symbionts in the Ciliate Metopus from Anaerobic Granular Sludge.

Hirakata Y, Oshiki M, Kuroda K, Hatamoto M, Kubota K, Yamaguchi T, Harada H, Araki N.

Microbes Environ. 2015;30(4):335-8. doi: 10.1264/jsme2.ME15154. Epub 2015 Dec 4.

20.

Ecology and physiology of anaerobic ammonium oxidizing bacteria.

Oshiki M, Satoh H, Okabe S.

Environ Microbiol. 2016 Sep;18(9):2784-96. doi: 10.1111/1462-2920.13134. Epub 2016 Jan 18. Review.

PMID:
26616750
21.

Effects of dissolved oxygen and pH on nitrous oxide production rates in autotrophic partial nitrification granules.

Rathnayake RM, Oshiki M, Ishii S, Segawa T, Satoh H, Okabe S.

Bioresour Technol. 2015 Dec;197:15-22. doi: 10.1016/j.biortech.2015.08.054. Epub 2015 Aug 21.

22.

Rapid and successful start-up of anammox process by immobilizing the minimal quantity of biomass in PVA-SA gel beads.

Ali M, Oshiki M, Rathnayake L, Ishii S, Satoh H, Okabe S.

Water Res. 2015 Aug 1;79:147-57. doi: 10.1016/j.watres.2015.04.024. Epub 2015 Apr 29.

PMID:
25980915
23.

Draft Genome Sequence of an Anaerobic Ammonium-Oxidizing Bacterium, "Candidatus Brocadia sinica".

Oshiki M, Shinyako-Hata K, Satoh H, Okabe S.

Genome Announc. 2015 Apr 16;3(2). pii: e00267-15. doi: 10.1128/genomeA.00267-15.

24.

Physiological characterization of anaerobic ammonium oxidizing bacterium 'Candidatus Jettenia caeni'.

Ali M, Oshiki M, Awata T, Isobe K, Kimura Z, Yoshikawa H, Hira D, Kindaichi T, Satoh H, Fujii T, Okabe S.

Environ Microbiol. 2015 Jun;17(6):2172-89. doi: 10.1111/1462-2920.12674. Epub 2014 Dec 17.

PMID:
25367004
25.

Simple, rapid and effective preservation and reactivation of anaerobic ammonium oxidizing bacterium "Candidatus Brocadia sinica".

Ali M, Oshiki M, Okabe S.

Water Res. 2014 Jun 15;57:215-22. doi: 10.1016/j.watres.2014.03.036. Epub 2014 Mar 27.

PMID:
24726991
26.

Cultivation of planktonic anaerobic ammonium oxidation (anammox) bacteria using membrane bioreactor.

Oshiki M, Awata T, Kindaichi T, Satoh H, Okabe S.

Microbes Environ. 2013;28(4):436-43. Epub 2013 Nov 8.

27.

Source identification of nitrous oxide on autotrophic partial nitrification in a granular sludge reactor.

Rathnayake RM, Song Y, Tumendelger A, Oshiki M, Ishii S, Satoh H, Toyoda S, Yoshida N, Okabe S.

Water Res. 2013 Dec 1;47(19):7078-86. doi: 10.1016/j.watres.2013.07.055. Epub 2013 Oct 23.

28.

Nitrate-dependent ferrous iron oxidation by anaerobic ammonium oxidation (anammox) bacteria.

Oshiki M, Ishii S, Yoshida K, Fujii N, Ishiguro M, Satoh H, Okabe S.

Appl Environ Microbiol. 2013 Jul;79(13):4087-93. doi: 10.1128/AEM.00743-13. Epub 2013 Apr 26.

29.

Physiological characterization of an anaerobic ammonium-oxidizing bacterium belonging to the "Candidatus scalindua" group.

Awata T, Oshiki M, Kindaichi T, Ozaki N, Ohashi A, Okabe S.

Appl Environ Microbiol. 2013 Jul;79(13):4145-8. doi: 10.1128/AEM.00056-13. Epub 2013 Apr 12.

30.
31.

Revealing microbial community structures in large- and small-scale activated sludge systems by barcoded pyrosequencing of 16S rRNA gene.

Ranasinghe PD, Satoh H, Oshiki M, Oshima K, Suda W, Hattori M, Mino T.

Water Sci Technol. 2012;66(10):2155-61. doi: 10.2166/wst.2012.428.

PMID:
22949246
32.

NATO Special Operations Forces Medical Engagements and Partnering Course: Initial Curriculum Recommendations from the NSHQ SOFMEP Committee.

Alderman SM, Arvidsson CJ, Boedecker BH, Durck CH, Ferguson JL, Harreld CE, House JH, Irizarry DJ, Oshiki MS, Sanchack KE, Torres JE.

J Spec Oper Med. 2012 Summer;12(2):27-32.

PMID:
22707022
33.
34.

N2O emission from a partial nitrification-anammox process and identification of a key biological process of N2O emission from anammox granules.

Okabe S, Oshiki M, Takahashi Y, Satoh H.

Water Res. 2011 Dec 1;45(19):6461-70. doi: 10.1016/j.watres.2011.09.040. Epub 2011 Sep 29.

PMID:
21996609
35.

Development of long-term stable partial nitrification and subsequent anammox process.

Okabe S, Oshiki M, Takahashi Y, Satoh H.

Bioresour Technol. 2011 Jul;102(13):6801-7. doi: 10.1016/j.biortech.2011.04.011. Epub 2011 Apr 9.

PMID:
21530243
36.

Physiological characteristics of the anaerobic ammonium-oxidizing bacterium 'Candidatus Brocadia sinica'.

Oshiki M, Shimokawa M, Fujii N, Satoh H, Okabe S.

Microbiology. 2011 Jun;157(Pt 6):1706-13. doi: 10.1099/mic.0.048595-0. Epub 2011 Apr 7.

PMID:
21474538
37.
38.

Separation of PHA-accumulating cells in activated sludge based on differences in buoyant density.

Oshiki M, Onuki M, Satoh H, Mino T.

J Gen Appl Microbiol. 2010 Apr;56(2):163-7. No abstract available.

39.

A great leap forward in microbial ecology.

Okabe S, Oshiki M, Kamagata Y, Yamaguchi N, Toyofuku M, Yawata Y, Tashiro Y, Nomura N, Ohta H, Ohkuma M, Hiraishi A, Minamisawa K.

Microbes Environ. 2010;25(4):230-40. Review.

40.

PHA-accumulating microorganisms in full-scale wastewater treatment plants.

Oshiki M, Onuki M, Satoh H, Mino T.

Water Sci Technol. 2008;58(1):13-20. doi: 10.2166/wst.2008.652.

PMID:
18653931

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