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Items: 45

1.

Transcription factor DUO1 generated by neo-functionalization is associated with evolution of sperm differentiation in plants.

Higo A, Kawashima T, Borg M, Zhao M, López-Vidriero I, Sakayama H, Montgomery SA, Sekimoto H, Hackenberg D, Shimamura M, Nishiyama T, Sakakibara K, Tomita Y, Togawa T, Kunimoto K, Osakabe A, Suzuki Y, Yamato KT, Ishizaki K, Nishihama R, Kohchi T, Franco-Zorrilla JM, Twell D, Berger F, Araki T.

Nat Commun. 2018 Dec 11;9(1):5283. doi: 10.1038/s41467-018-07728-3.

2.

Corrigendum to: Contribution of histone N-terminal tails to the structure and stability of nucleosomes.

Iwasaki W, Miya Y, Horikoshi N, Osakabe A, Taguchi H, Tachiwana H, Shibata T, Kagawa W, Kurumizaka H.

FEBS Open Bio. 2018 Aug 23;8(9):1567. doi: 10.1002/2211-5463.12508. eCollection 2018 Sep.

3.

Histone H2A variants confer specific properties to nucleosomes and impact on chromatin accessibility.

Osakabe A, Lorkovic ZJ, Kobayashi W, Tachiwana H, Yelagandula R, Kurumizaka H, Berger F.

Nucleic Acids Res. 2018 Sep 6;46(15):7675-7685. doi: 10.1093/nar/gky540.

4.

Structural Diversity of Nucleosomes Characterized by Native Mass Spectrometry.

Saikusa K, Osakabe A, Kato D, Fuchigami S, Nagadoi A, Nishimura Y, Kurumizaka H, Akashi S.

Anal Chem. 2018 Jul 3;90(13):8217-8226. doi: 10.1021/acs.analchem.8b01649. Epub 2018 Jun 12.

PMID:
29860831
5.

Synthetic Posttranslational Modifications: Chemical Catalyst-Driven Regioselective Histone Acylation of Native Chromatin.

Amamoto Y, Aoi Y, Nagashima N, Suto H, Yoshidome D, Arimura Y, Osakabe A, Kato D, Kurumizaka H, Kawashima SA, Yamatsugu K, Kanai M.

J Am Chem Soc. 2017 Jun 7;139(22):7568-7576. doi: 10.1021/jacs.7b02138. Epub 2017 May 23.

PMID:
28534629
6.

Genome-Wide Profiling of Histone Modifications and Histone Variants in Arabidopsis thaliana and Marchantia polymorpha.

Yelagandula R, Osakabe A, Axelsson E, Berger F, Kawashima T.

Methods Mol Biol. 2017;1610:93-106. doi: 10.1007/978-1-4939-7003-2_7.

PMID:
28439859
7.

Crystal structure of the overlapping dinucleosome composed of hexasome and octasome.

Kato D, Osakabe A, Arimura Y, Mizukami Y, Horikoshi N, Saikusa K, Akashi S, Nishimura Y, Park SY, Nogami J, Maehara K, Ohkawa Y, Matsumoto A, Kono H, Inoue R, Sugiyama M, Kurumizaka H.

Science. 2017 Apr 14;356(6334):205-208. doi: 10.1126/science.aak9867.

PMID:
28408607
8.

Crystal Structure and Characterization of Novel Human Histone H3 Variants, H3.6, H3.7, and H3.8.

Taguchi H, Xie Y, Horikoshi N, Maehara K, Harada A, Nogami J, Sato K, Arimura Y, Osakabe A, Kujirai T, Iwasaki T, Semba Y, Tachibana T, Kimura H, Ohkawa Y, Kurumizaka H.

Biochemistry. 2017 Apr 25;56(16):2184-2196. doi: 10.1021/acs.biochem.6b01098. Epub 2017 Apr 10.

PMID:
28374988
9.

Polymorphism of apyrimidinic DNA structures in the nucleosome.

Osakabe A, Arimura Y, Matsumoto S, Horikoshi N, Sugasawa K, Kurumizaka H.

Sci Rep. 2017 Jan 31;7:41783. doi: 10.1038/srep41783.

10.

Testis-Specific Histone Variant H3t Gene Is Essential for Entry into Spermatogenesis.

Ueda J, Harada A, Urahama T, Machida S, Maehara K, Hada M, Makino Y, Nogami J, Horikoshi N, Osakabe A, Taguchi H, Tanaka H, Tachiwana H, Yao T, Yamada M, Iwamoto T, Isotani A, Ikawa M, Tachibana T, Okada Y, Kimura H, Ohkawa Y, Kurumizaka H, Yamagata K.

Cell Rep. 2017 Jan 17;18(3):593-600. doi: 10.1016/j.celrep.2016.12.065.

11.

Structure and function of human histone H3.Y nucleosome.

Kujirai T, Horikoshi N, Sato K, Maehara K, Machida S, Osakabe A, Kimura H, Ohkawa Y, Kurumizaka H.

Nucleic Acids Res. 2017 Apr 7;45(6):3612. doi: 10.1093/nar/gkw1219. No abstract available.

12.

Structure and function of human histone H3.Y nucleosome.

Kujirai T, Horikoshi N, Sato K, Maehara K, Machida S, Osakabe A, Kimura H, Ohkawa Y, Kurumizaka H.

Nucleic Acids Res. 2016 Jul 27;44(13):6127-41. doi: 10.1093/nar/gkw202. Epub 2016 Mar 25. Erratum in: Nucleic Acids Res. 2016 Dec 1;:.

13.

C-terminal acidic domain of histone chaperone human NAP1 is an efficient binding assistant for histone H2A-H2B, but not H3-H4.

Ohtomo H, Akashi S, Moriwaki Y, Okuwaki M, Osakabe A, Nagata K, Kurumizaka H, Nishimura Y.

Genes Cells. 2016 Mar;21(3):252-63. doi: 10.1111/gtc.12339. Epub 2016 Feb 4.

14.

Crystal structure of the nucleosome containing ultraviolet light-induced cyclobutane pyrimidine dimer.

Horikoshi N, Tachiwana H, Kagawa W, Osakabe A, Matsumoto S, Iwai S, Sugasawa K, Kurumizaka H.

Biochem Biophys Res Commun. 2016 Feb 26;471(1):117-22. doi: 10.1016/j.bbrc.2016.01.170. Epub 2016 Feb 2.

PMID:
26837048
15.

Histone H3.5 forms an unstable nucleosome and accumulates around transcription start sites in human testis.

Urahama T, Harada A, Maehara K, Horikoshi N, Sato K, Sato Y, Shiraishi K, Sugino N, Osakabe A, Tachiwana H, Kagawa W, Kimura H, Ohkawa Y, Kurumizaka H.

Epigenetics Chromatin. 2016 Jan 15;9:2. doi: 10.1186/s13072-016-0051-y. eCollection 2016.

16.

Influence of polynucleosome preparation methods on sedimentation velocity analysis of chromatin.

Kujirai T, Machida S, Osakabe A, Kurumizaka H.

J Biochem. 2017 Apr 1;161(4):381-388. doi: 10.1093/jb/mvw081.

PMID:
28338761
17.

Structural basis of pyrimidine-pyrimidone (6-4) photoproduct recognition by UV-DDB in the nucleosome.

Osakabe A, Tachiwana H, Kagawa W, Horikoshi N, Matsumoto S, Hasegawa M, Matsumoto N, Toga T, Yamamoto J, Hanaoka F, Thomä NH, Sugasawa K, Iwai S, Kurumizaka H.

Sci Rep. 2015 Nov 17;5:16330. doi: 10.1038/srep16330.

18.

Estrogen Exhibits a Biphasic Effect on Prostate Tumor Growth through the Estrogen Receptor β-KLF5 Pathway.

Nakajima Y, Osakabe A, Waku T, Suzuki T, Akaogi K, Fujimura T, Homma Y, Inoue S, Yanagisawa J.

Mol Cell Biol. 2015 Oct 19;36(1):144-56. doi: 10.1128/MCB.00625-15. Print 2016 Jan 1.

19.

Influence of DNA methylation on positioning and DNA flexibility of nucleosomes with pericentric satellite DNA.

Osakabe A, Adachi F, Arimura Y, Maehara K, Ohkawa Y, Kurumizaka H.

Open Biol. 2015 Oct;5(10). pii: 150128. doi: 10.1098/rsob.150128.

20.

Dynamic changes in CCAN organization through CENP-C during cell-cycle progression.

Nagpal H, Hori T, Furukawa A, Sugase K, Osakabe A, Kurumizaka H, Fukagawa T.

Mol Biol Cell. 2015 Nov 1;26(21):3768-76. doi: 10.1091/mbc.E15-07-0531. Epub 2015 Sep 9.

21.

Corrigendum: Structural basis of a nucleosome containing histone H2A.B/H2A.Bbd that transiently associates with reorganized chromatin.

Arimura Y, Kimura H, Oda T, Sato K, Osakabe A, Tachiwana H, Sato Y, Kinugasa Y, Ikura T, Sugiyama M, Sato M, Kurumizaka H.

Sci Rep. 2015 Jul 13;5:9628. doi: 10.1038/srep09628. No abstract available.

22.

Stable complex formation of CENP-B with the CENP-A nucleosome.

Fujita R, Otake K, Arimura Y, Horikoshi N, Miya Y, Shiga T, Osakabe A, Tachiwana H, Ohzeki J, Larionov V, Masumoto H, Kurumizaka H.

Nucleic Acids Res. 2015 May 26;43(10):4909-22. doi: 10.1093/nar/gkv405. Epub 2015 Apr 27.

23.

Human tNASP promotes in vitro nucleosome assembly with histone H3.3.

Kato D, Osakabe A, Tachiwana H, Tanaka H, Kurumizaka H.

Biochemistry. 2015 Feb 10;54(5):1171-9. doi: 10.1021/bi501307g. Epub 2015 Jan 30.

PMID:
25615412
24.

N-terminal phosphorylation of HP1α increases its nucleosome-binding specificity.

Nishibuchi G, Machida S, Osakabe A, Murakoshi H, Hiragami-Hamada K, Nakagawa R, Fischle W, Nishimura Y, Kurumizaka H, Tagami H, Nakayama J.

Nucleic Acids Res. 2014 Nov 10;42(20):12498-511. doi: 10.1093/nar/gku995. Epub 2014 Oct 20.

25.

DNA binding properties of the actin-related protein Arp8 and its role in DNA repair.

Osakabe A, Takahashi Y, Murakami H, Otawa K, Tachiwana H, Oma Y, Nishijima H, Shibahara KI, Kurumizaka H, Harata M.

PLoS One. 2014 Oct 9;9(10):e108354. doi: 10.1371/journal.pone.0108354. eCollection 2014.

26.

Nap1 stimulates homologous recombination by RAD51 and RAD54 in higher-ordered chromatin containing histone H1.

Machida S, Takaku M, Ikura M, Sun J, Suzuki H, Kobayashi W, Kinomura A, Osakabe A, Tachiwana H, Horikoshi Y, Fukuto A, Matsuda R, Ura K, Tashiro S, Ikura T, Kurumizaka H.

Sci Rep. 2014 May 6;4:4863. doi: 10.1038/srep04863.

27.

Structure of human nucleosome containing the testis-specific histone variant TSH2B.

Urahama T, Horikoshi N, Osakabe A, Tachiwana H, Kurumizaka H.

Acta Crystallogr F Struct Biol Commun. 2014 Apr;70(Pt 4):444-9. doi: 10.1107/S2053230X14004695. Epub 2014 Mar 25.

28.

Structural basis of a nucleosome containing histone H2A.B/H2A.Bbd that transiently associates with reorganized chromatin.

Arimura Y, Kimura H, Oda T, Sato K, Osakabe A, Tachiwana H, Sato Y, Kinugasa Y, Ikura T, Sugiyama M, Sato M, Kurumizaka H.

Sci Rep. 2013 Dec 16;3:3510. doi: 10.1038/srep03510. Erratum in: Sci Rep. 2015;5:9628.

29.

Structural polymorphism in the L1 loop regions of human H2A.Z.1 and H2A.Z.2.

Horikoshi N, Sato K, Shimada K, Arimura Y, Osakabe A, Tachiwana H, Hayashi-Takanaka Y, Iwasaki W, Kagawa W, Harata M, Kimura H, Kurumizaka H.

Acta Crystallogr D Biol Crystallogr. 2013 Dec;69(Pt 12):2431-9. doi: 10.1107/S090744491302252X. Epub 2013 Nov 19.

30.

Contribution of histone N-terminal tails to the structure and stability of nucleosomes.

Iwasaki W, Miya Y, Horikoshi N, Osakabe A, Taguchi H, Tachiwana H, Shibata T, Kagawa W, Kurumizaka H.

FEBS Open Bio. 2013 Aug 22;3:363-9. doi: 10.1016/j.fob.2013.08.007. eCollection 2013. Erratum in: FEBS Open Bio. 2018 Aug 23;8(9):1567.

31.

The centromeric nucleosome-like CENP-T-W-S-X complex induces positive supercoils into DNA.

Takeuchi K, Nishino T, Mayanagi K, Horikoshi N, Osakabe A, Tachiwana H, Hori T, Kurumizaka H, Fukagawa T.

Nucleic Acids Res. 2014 Feb;42(3):1644-55. doi: 10.1093/nar/gkt1124. Epub 2013 Nov 14.

32.

Vertebrate Spt2 is a novel nucleolar histone chaperone that assists in ribosomal DNA transcription.

Osakabe A, Tachiwana H, Takaku M, Hori T, Obuse C, Kimura H, Fukagawa T, Kurumizaka H.

J Cell Sci. 2013 Mar 15;126(Pt 6):1323-32. doi: 10.1242/jcs.112623. Epub 2013 Feb 1.

33.

Nap1 regulates proper CENP-B binding to nucleosomes.

Tachiwana H, Miya Y, Shono N, Ohzeki J, Osakabe A, Otake K, Larionov V, Earnshaw WC, Kimura H, Masumoto H, Kurumizaka H.

Nucleic Acids Res. 2013 Mar 1;41(5):2869-80. doi: 10.1093/nar/gks1464. Epub 2013 Jan 15.

34.

Histone chaperone activity of Fanconi anemia proteins, FANCD2 and FANCI, is required for DNA crosslink repair.

Sato K, Ishiai M, Toda K, Furukoshi S, Osakabe A, Tachiwana H, Takizawa Y, Kagawa W, Kitao H, Dohmae N, Obuse C, Kimura H, Takata M, Kurumizaka H.

EMBO J. 2012 Aug 29;31(17):3524-36. doi: 10.1038/emboj.2012.197. Epub 2012 Jul 24.

35.

Crystal structure of the human centromeric nucleosome containing CENP-A.

Tachiwana H, Kagawa W, Shiga T, Osakabe A, Miya Y, Saito K, Hayashi-Takanaka Y, Oda T, Sato M, Park SY, Kimura H, Kurumizaka H.

Nature. 2011 Jul 10;476(7359):232-5. doi: 10.1038/nature10258.

PMID:
21743476
36.

Structures of human nucleosomes containing major histone H3 variants.

Tachiwana H, Osakabe A, Shiga T, Miya Y, Kimura H, Kagawa W, Kurumizaka H.

Acta Crystallogr D Biol Crystallogr. 2011 Jun;67(Pt 6):578-83. doi: 10.1107/S0907444911014818. Epub 2011 May 17.

PMID:
21636898
37.

Estrogen regulates tumor growth through a nonclassical pathway that includes the transcription factors ERβ and KLF5.

Nakajima Y, Akaogi K, Suzuki T, Osakabe A, Yamaguchi C, Sunahara N, Ishida J, Kako K, Ogawa S, Fujimura T, Homma Y, Fukamizu A, Murayama A, Kimura K, Inoue S, Yanagisawa J.

Sci Signal. 2011 Apr 12;4(168):ra22. doi: 10.1126/scisignal.2001551.

38.

Structural and biochemical analyses of the human PAD4 variant encoded by a functional haplotype gene.

Horikoshi N, Tachiwana H, Saito K, Osakabe A, Sato M, Yamada M, Akashi S, Nishimura Y, Kagawa W, Kurumizaka H.

Acta Crystallogr D Biol Crystallogr. 2011 Feb;67(Pt 2):112-8. doi: 10.1107/S0907444910051711. Epub 2011 Jan 8.

PMID:
21245532
39.

Structural basis of instability of the nucleosome containing a testis-specific histone variant, human H3T.

Tachiwana H, Kagawa W, Osakabe A, Kawaguchi K, Shiga T, Hayashi-Takanaka Y, Kimura H, Kurumizaka H.

Proc Natl Acad Sci U S A. 2010 Jun 8;107(23):10454-9. doi: 10.1073/pnas.1003064107. Epub 2010 May 24.

40.

Nucleosome formation activity of human somatic nuclear autoantigenic sperm protein (sNASP).

Osakabe A, Tachiwana H, Matsunaga T, Shiga T, Nozawa RS, Obuse C, Kurumizaka H.

J Biol Chem. 2010 Apr 16;285(16):11913-21. doi: 10.1074/jbc.M109.083238. Epub 2010 Feb 18.

41.

Nucleosome formation with the testis-specific histone H3 variant, H3t, by human nucleosome assembly proteins in vitro.

Tachiwana H, Osakabe A, Kimura H, Kurumizaka H.

Nucleic Acids Res. 2008 Apr;36(7):2208-18. doi: 10.1093/nar/gkn060. Epub 2008 Feb 16.

42.

In vitro and in vivo antiproliferative and trypanocidal activities of ruthenium NO donors.

Silva JJ, Osakabe AL, Pavanelli WR, Silva JS, Franco DW.

Br J Pharmacol. 2007 Sep;152(1):112-21. Epub 2007 Jul 2.

43.

Extense variant gene family repertoire overlap in Western Amazon Plasmodium falciparum isolates.

Albrecht L, Merino EF, Hoffmann EH, Ferreira MU, de Mattos Ferreira RG, Osakabe AL, Dalla Martha RC, Ramharter M, Durham AM, Ferreira JE, Del Portillo HA, Wunderlich G.

Mol Biochem Parasitol. 2006 Dec;150(2):157-65. Epub 2006 Aug 7.

PMID:
16938359
44.

Origins of sequence diversity in the malaria vaccine candidate merozoite surface protein-2 (MSP-2) in Amazonian isolates of Plasmodium falciparum.

Hoffmann EH, Malafronte RS, Moraes-Avila SL, Osakabe AL, Wunderlich G, Durham AM, Ribolla PE, del Portillo HA, Ferreira MU.

Gene. 2006 Jul 19;376(2):224-30. Epub 2006 Apr 5.

PMID:
16716539
45.

Components of protocyanin, a blue pigment from the blue flowers of Centaurea cyanus.

Takeda K, Osakabe A, Saito S, Furuyama D, Tomita A, Kojima Y, Yamadera M, Sakuta M.

Phytochemistry. 2005 Jul;66(13):1607-13.

PMID:
16005311

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