Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 40

1.

Complete Genome Sequences of Four Microbacterium Strains Isolated from Metal- and Radionuclide-Rich Soils.

Ortet P, Gallois N, Long J, Zirah S, Berthomieu C, Armengaud J, Alpha-Bazin B, Barakat M, Chapon V.

Microbiol Resour Announc. 2019 Oct 17;8(42). pii: e00846-19. doi: 10.1128/MRA.00846-19.

PMID:
31624160
2.

Plant hosts control microbial denitrification activity.

Achouak W, Abrouk D, Guyonnet J, Barakat M, Ortet P, Simon L, Lerondelle C, Heulin T, Haichar FEZ.

FEMS Microbiol Ecol. 2019 Mar 1;95(3). pii: fiz021. doi: 10.1093/femsec/fiz021.

PMID:
30726948
3.

Plant Nutrient Resource Use Strategies Shape Active Rhizosphere Microbiota Through Root Exudation.

Guyonnet JP, Guillemet M, Dubost A, Simon L, Ortet P, Barakat M, Heulin T, Achouak W, Haichar FEZ.

Front Plant Sci. 2018 Nov 23;9:1662. doi: 10.3389/fpls.2018.01662. eCollection 2018.

4.

Proteomics data for characterizing Microbacterium oleivorans A9, an uranium-tolerant actinobacterium isolated near the Chernobyl nuclear power plant.

Gallois N, Piette L, Ortet P, Bakarat M, Long J, Berthomieu C, Armengaud J, Chapon V, Alpha-Bazin B.

Data Brief. 2018 Oct 30;21:1125-1129. doi: 10.1016/j.dib.2018.10.136. eCollection 2018 Dec.

5.

Two New Secreted Proteases Generate a Casein-Derived Antimicrobial Peptide in Bacillus cereus Food Born Isolate Leading to Bacterial Competition in Milk.

Ouertani A, Chaabouni I, Mosbah A, Long J, Barakat M, Mansuelle P, Mghirbi O, Najjari A, Ouzari HI, Masmoudi AS, Maresca M, Ortet P, Gigmes D, Mabrouk K, Cherif A.

Front Microbiol. 2018 Jun 4;9:1148. doi: 10.3389/fmicb.2018.01148. eCollection 2018.

6.

Sequencing, De Novo Assembly, and Annotation of the Complete Genome of a New Thraustochytrid Species, Strain CCAP_4062/3.

Seddiki K, Godart F, Aiese Cigliano R, Sanseverino W, Barakat M, Ortet P, Rébeillé F, Maréchal E, Cagnac O, Amato A.

Genome Announc. 2018 Mar 15;6(11). pii: e01335-17. doi: 10.1128/genomeA.01335-17.

7.

Proteogenomic insights into uranium tolerance of a Chernobyl's Microbacterium bacterial isolate.

Gallois N, Alpha-Bazin B, Ortet P, Barakat M, Piette L, Long J, Berthomieu C, Armengaud J, Chapon V.

J Proteomics. 2018 Apr 15;177:148-157. doi: 10.1016/j.jprot.2017.11.021. Epub 2017 Dec 6.

PMID:
29223802
8.

Modifications at K31 on the lateral surface of histone H4 contribute to genome structure and expression in apicomplexan parasites.

Sindikubwabo F, Ding S, Hussain T, Ortet P, Barakat M, Baumgarten S, Cannella D, Palencia A, Bougdour A, Belmudes L, Couté Y, Tardieux I, Botté CY, Scherf A, Hakimi MA.

Elife. 2017 Nov 4;6. pii: e29391. doi: 10.7554/eLife.29391.

9.

Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale.

Bernardo P, Charles-Dominique T, Barakat M, Ortet P, Fernandez E, Filloux D, Hartnady P, Rebelo TA, Cousins SR, Mesleard F, Cohez D, Yavercovski N, Varsani A, Harkins GW, Peterschmitt M, Malmstrom CM, Martin DP, Roumagnac P.

ISME J. 2018 Jan;12(1):173-184. doi: 10.1038/ismej.2017.155. Epub 2017 Oct 20.

10.

Pearl Millet Genetic Traits Shape Rhizobacterial Diversity and Modulate Rhizosphere Aggregation.

Ndour PMS, Gueye M, Barakat M, Ortet P, Bertrand-Huleux M, Pablo AL, Dezette D, Chapuis-Lardy L, Assigbetsé K, Kane NA, Vigouroux Y, Achouak W, Ndoye I, Heulin T, Cournac L.

Front Plant Sci. 2017 Jul 27;8:1288. doi: 10.3389/fpls.2017.01288. eCollection 2017.

11.

Evidence that Soil Properties and Organic Coating Drive the Phytoavailability of Cerium Oxide Nanoparticles.

Layet C, Auffan M, Santaella C, Chevassus-Rosset C, Montes M, Ortet P, Barakat M, Collin B, Legros S, Bravin MN, Angeletti B, Kieffer I, Proux O, Hazemann JL, Doelsch E.

Environ Sci Technol. 2017 Sep 5;51(17):9756-9764. doi: 10.1021/acs.est.7b02397. Epub 2017 Aug 18.

PMID:
28777564
12.

Soil prokaryotic communities in Chernobyl waste disposal trench T22 are modulated by organic matter and radionuclide contamination.

Theodorakopoulos N, Février L, Barakat M, Ortet P, Christen R, Piette L, Levchuk S, Beaugelin-Seiller K, Sergeant C, Berthomieu C, Chapon V.

FEMS Microbiol Ecol. 2017 Aug 1;93(8). doi: 10.1093/femsec/fix079.

PMID:
28645185
13.

Draft Genome Sequence of Microbacterium oleivorans Strain A9, a Bacterium Isolated from Chernobyl Radionuclide-Contaminated Soil.

Ortet P, Gallois N, Piette L, Long J, Berthomieu C, Armengaud J, Barakat M, Chapon V.

Genome Announc. 2017 Apr 6;5(14). pii: e00092-17. doi: 10.1128/genomeA.00092-17.

14.

Design Defines the Effects of Nanoceria at a Low Dose on Soil Microbiota and the Potentiation of Impacts by the Canola Plant.

Hamidat M, Barakat M, Ortet P, Chanéac C, Rose J, Bottero JY, Heulin T, Achouak W, Santaella C.

Environ Sci Technol. 2016 Jul 5;50(13):6892-901. doi: 10.1021/acs.est.6b01056. Epub 2016 Jun 14.

PMID:
27243334
15.

Isolation and identification of Pseudomonas syringae facilitated by a PCR targeting the whole P. syringae group.

Guilbaud C, Morris CE, Barakat M, Ortet P, Berge O.

FEMS Microbiol Ecol. 2016 Jan;92(1). pii: fiv146. doi: 10.1093/femsec/fiv146. Epub 2015 Nov 25.

PMID:
26610434
16.

Microbiote shift in the Medicago sativa rhizosphere in response to cyanotoxins extract exposure.

El Khalloufi F, Oufdou K, Bertrand M, Lahrouni M, Oudra B, Ortet P, Barakat M, Heulin T, Achouak W.

Sci Total Environ. 2016 Jan 1;539:135-142. doi: 10.1016/j.scitotenv.2015.08.127. Epub 2015 Sep 8.

PMID:
26356186
17.

P2CS: updates of the prokaryotic two-component systems database.

Ortet P, Whitworth DE, Santaella C, Achouak W, Barakat M.

Nucleic Acids Res. 2015 Jan;43(Database issue):D536-41. doi: 10.1093/nar/gku968. Epub 2014 Oct 16.

18.

P2RP: a Web-based framework for the identification and analysis of regulatory proteins in prokaryotic genomes.

Barakat M, Ortet P, Whitworth DE.

BMC Genomics. 2013 Apr 20;14:269. doi: 10.1186/1471-2164-14-269.

19.

Host cell subversion by Toxoplasma GRA16, an exported dense granule protein that targets the host cell nucleus and alters gene expression.

Bougdour A, Durandau E, Brenier-Pinchart MP, Ortet P, Barakat M, Kieffer S, Curt-Varesano A, Curt-Bertini RL, Bastien O, Coute Y, Pelloux H, Hakimi MA.

Cell Host Microbe. 2013 Apr 17;13(4):489-500. doi: 10.1016/j.chom.2013.03.002.

20.

Reversible oxygen-tolerant hydrogenase carried by free-living N2-fixing bacteria isolated from the rhizospheres of rice, maize, and wheat.

Roumagnac P, Richaud P, Barakat M, Ortet P, Roncato MA, Heulin T, Peltier G, Achouak W, Cournac L.

Microbiologyopen. 2012 Dec;1(4):349-61. doi: 10.1002/mbo3.37. Epub 2012 Sep 12.

21.

P2TF: a comprehensive resource for analysis of prokaryotic transcription factors.

Ortet P, De Luca G, Whitworth DE, Barakat M.

BMC Genomics. 2012 Nov 15;13:628. doi: 10.1186/1471-2164-13-628.

22.

Multiple transcription-activating sequences regulate the RsmZ regulatory small RNA of Pseudomonas brassicacearum.

Lalaouna D, Fochesato S, Barakat M, Ortet P, Achouak W.

J Bacteriol. 2012 Sep;194(18):4888-93. doi: 10.1128/JB.00408-12. Epub 2012 Jul 6.

23.

Modulation of metabolism and switching to biofilm prevail over exopolysaccharide production in the response of Rhizobium alamii to cadmium.

Schue M, Fekete A, Ortet P, Brutesco C, Heulin T, Schmitt-Kopplin P, Achouak W, Santaella C.

PLoS One. 2011;6(11):e26771. doi: 10.1371/journal.pone.0026771. Epub 2011 Nov 9.

24.

The cyst-dividing bacterium Ramlibacter tataouinensis TTB310 genome reveals a well-stocked toolbox for adaptation to a desert environment.

De Luca G, Barakat M, Ortet P, Fochesato S, Jourlin-Castelli C, Ansaldi M, Py B, Fichant G, Coutinho PM, Voulhoux R, Bastien O, Maréchal E, Henrissat B, Quentin Y, Noirot P, Filloux A, Méjean V, DuBow MS, Barras F, Barbe V, Weissenbach J, Mihalcescu I, Verméglio A, Achouak W, Heulin T.

PLoS One. 2011;6(9):e23784. doi: 10.1371/journal.pone.0023784. Epub 2011 Sep 1.

25.

Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum.

Ortet P, Barakat M, Lalaouna D, Fochesato S, Barbe V, Vacherie B, Santaella C, Heulin T, Achouak W.

J Bacteriol. 2011 Jun;193(12):3146. doi: 10.1128/JB.00411-11. Epub 2011 Apr 22.

26.

Where does the alignment score distribution shape come from?

Ortet P, Bastien O.

Evol Bioinform Online. 2010 Dec 12;6:159-87. doi: 10.4137/EBO.S5875.

27.

P2CS: a database of prokaryotic two-component systems.

Barakat M, Ortet P, Whitworth DE.

Nucleic Acids Res. 2011 Jan;39(Database issue):D771-6. doi: 10.1093/nar/gkq1023. Epub 2010 Nov 4.

28.

A complex small RNA repertoire is generated by a plant/fungal-like machinery and effected by a metazoan-like Argonaute in the single-cell human parasite Toxoplasma gondii.

Braun L, Cannella D, Ortet P, Barakat M, Sautel CF, Kieffer S, Garin J, Bastien O, Voinnet O, Hakimi MA.

PLoS Pathog. 2010 May 27;6(5):e1000920. doi: 10.1371/journal.ppat.1000920.

29.

Structure, function, and evolution of the Thiomonas spp. genome.

Arsène-Ploetze F, Koechler S, Marchal M, Coppée JY, Chandler M, Bonnefoy V, Brochier-Armanet C, Barakat M, Barbe V, Battaglia-Brunet F, Bruneel O, Bryan CG, Cleiss-Arnold J, Cruveiller S, Erhardt M, Heinrich-Salmeron A, Hommais F, Joulian C, Krin E, Lieutaud A, Lièvremont D, Michel C, Muller D, Ortet P, Proux C, Siguier P, Roche D, Rouy Z, Salvignol G, Slyemi D, Talla E, Weiss S, Weissenbach J, Médigue C, Bertin PN.

PLoS Genet. 2010 Feb 26;6(2):e1000859. doi: 10.1371/journal.pgen.1000859.

30.

Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons.

Baudet M, Ortet P, Gaillard JC, Fernandez B, Guérin P, Enjalbal C, Subra G, de Groot A, Barakat M, Dedieu A, Armengaud J.

Mol Cell Proteomics. 2010 Feb;9(2):415-26. doi: 10.1074/mcp.M900359-MCP200. Epub 2009 Oct 29.

31.

P2CS: a two-component system resource for prokaryotic signal transduction research.

Barakat M, Ortet P, Jourlin-Castelli C, Ansaldi M, Méjean V, Whitworth DE.

BMC Genomics. 2009 Jul 15;10:315. doi: 10.1186/1471-2164-10-315.

32.

Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti.

de Groot A, Dulermo R, Ortet P, Blanchard L, Guérin P, Fernandez B, Vacherie B, Dossat C, Jolivet E, Siguier P, Chandler M, Barakat M, Dedieu A, Barbe V, Heulin T, Sommer S, Achouak W, Armengaud J.

PLoS Genet. 2009 Mar;5(3):e1000434. doi: 10.1371/journal.pgen.1000434. Epub 2009 Mar 27.

33.

Drug inhibition of HDAC3 and epigenetic control of differentiation in Apicomplexa parasites.

Bougdour A, Maubon D, Baldacci P, Ortet P, Bastien O, Bouillon A, Barale JC, Pelloux H, Ménard R, Hakimi MA.

J Exp Med. 2009 Apr 13;206(4):953-66. doi: 10.1084/jem.20082826. Epub 2009 Apr 6.

34.

The histone methylase KMTox interacts with the redox-sensor peroxiredoxin-1 and targets genes involved in Toxoplasma gondii antioxidant defences.

Sautel CF, Ortet P, Saksouk N, Kieffer S, Garin J, Bastien O, Hakimi MA.

Mol Microbiol. 2009 Jan;71(1):212-26. doi: 10.1111/j.1365-2958.2008.06519.x. Epub 2008 Nov 5.

35.

ProTISA: a comprehensive resource for translation initiation site annotation in prokaryotic genomes.

Hu GQ, Zheng X, Yang YF, Ortet P, She ZS, Zhu H.

Nucleic Acids Res. 2008 Jan;36(Database issue):D114-9. Epub 2007 Oct 16.

36.

ATM-mediated transcriptional and developmental responses to gamma-rays in Arabidopsis.

Ricaud L, Proux C, Renou JP, Pichon O, Fochesato S, Ortet P, Montané MH.

PLoS One. 2007 May 9;2(5):e430.

37.

A tale of two oxidation states: bacterial colonization of arsenic-rich environments.

Muller D, Médigue C, Koechler S, Barbe V, Barakat M, Talla E, Bonnefoy V, Krin E, Arsène-Ploetze F, Carapito C, Chandler M, Cournoyer B, Cruveiller S, Dossat C, Duval S, Heymann M, Leize E, Lieutaud A, Lièvremont D, Makita Y, Mangenot S, Nitschke W, Ortet P, Perdrial N, Schoepp B, Siguier P, Simeonova DD, Rouy Z, Segurens B, Turlin E, Vallenet D, Van Dorsselaer A, Weiss S, Weissenbach J, Lett MC, Danchin A, Bertin PN.

PLoS Genet. 2007 Apr 13;3(4):e53. Epub 2007 Mar 5.

38.

Integration and mining of malaria molecular, functional and pharmacological data: how far are we from a chemogenomic knowledge space?

Birkholtz LM, Bastien O, Wells G, Grando D, Joubert F, Kasam V, Zimmermann M, Ortet P, Jacq N, Saïdani N, Roy S, Hofmann-Apitius M, Breton V, Louw AI, Maréchal E.

Malar J. 2006 Nov 17;5:110. Review.

39.

A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation.

Misson J, Raghothama KG, Jain A, Jouhet J, Block MA, Bligny R, Ortet P, Creff A, Somerville S, Rolland N, Doumas P, Nacry P, Herrerra-Estrella L, Nussaume L, Thibaud MC.

Proc Natl Acad Sci U S A. 2005 Aug 16;102(33):11934-9. Epub 2005 Aug 5.

Supplemental Content

Support Center