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Items: 1 to 50 of 94

1.

Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data.

Hughes LC, Ortí G, Huang Y, Sun Y, Baldwin CC, Thompson AW, Arcila D, Betancur-R R, Li C, Becker L, Bellora N, Zhao X, Li X, Wang M, Fang C, Xie B, Zhou Z, Huang H, Chen S, Venkatesh B, Shi Q.

Proc Natl Acad Sci U S A. 2018 Jun 12;115(24):6249-6254. doi: 10.1073/pnas.1719358115. Epub 2018 May 14.

PMID:
29760103
2.

Analysis of relapse after transplantation in acute leukemia: A comparative on second allogeneic hematopoietic cell transplantation and donor lymphocyte infusions.

Ortí G, Sanz J, García-Cadenas I, Sánchez-Ortega I, Alonso L, Jiménez MJ, Sisinni L, Azqueta C, Salamero O, Badell I, Ferra C, de Heredia CD, Parody R, Sanz MA, Sierra J, Piñana JL, Querol S, Valcárcel D.

Exp Hematol. 2018 Jun;62:24-32. doi: 10.1016/j.exphem.2018.03.002. Epub 2018 Mar 8.

PMID:
29526774
3.

Correction to: An analysis of the kinetics of molecular response during the first trimester of treatment with nilotinib in newly diagnosed chronic myeloid leukemia patients in chronic phase.

Steegmann JL, Colomer D, Gómez-Casares MT, García-Gutiérrez V, Ortí G, Ramírez-Payer A, Olavarria E, Vall-Llovera F, Giraldo P, Conde E, Vallansot R, López-Lorenzo JL, Palomera L, Álvarez-Larrán A, Conesa V, Bautista G, Casas L, Giles F, Hochhaus A, Casado-Montero LF.

J Cancer Res Clin Oncol. 2018 Jan;144(1):187-188. doi: 10.1007/s00432-017-2532-1.

4.

Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life.

Arcila D, Ortí G, Vari R, Armbruster JW, Stiassny MLJ, Ko KD, Sabaj MH, Lundberg J, Revell LJ, Betancur-R R.

Nat Ecol Evol. 2017 Jan 13;1(2):20. doi: 10.1038/s41559-016-0020.

PMID:
28812610
5.

Transcriptomic differentiation underlying marine-to-freshwater transitions in the South American silversides Odontesthes argentinensis and O. bonariensis (Atheriniformes).

Hughes LC, Somoza GM, Nguyen BN, Bernot JP, González-Castro M, Díaz de Astarloa JM, Ortí G.

Ecol Evol. 2017 Jun 7;7(14):5258-5268. doi: 10.1002/ece3.3133. eCollection 2017 Jul.

6.

Phylogenetic classification of bony fishes.

Betancur-R R, Wiley EO, Arratia G, Acero A, Bailly N, Miya M, Lecointre G, Ortí G.

BMC Evol Biol. 2017 Jul 6;17(1):162. doi: 10.1186/s12862-017-0958-3.

7.

Microanatomical diversification of the zona pellucida in aplochelioid killifishes.

Thompson AW, Furness AI, Stone C, Rade CM, Ortí G.

J Fish Biol. 2017 Jul;91(1):126-143. doi: 10.1111/jfb.13332. Epub 2017 May 28.

PMID:
28555871
8.

An analysis of the kinetics of molecular response during the first trimester of treatment with nilotinib in newly diagnosed chronic myeloid leukemia patients in chronic phase.

Steegmann JL, Colomer D, Gómez-Casares MT, García-Gutiérrez V, Ortí G, Ramírez-Payer A, Olavarria E, Vall-Llovera F, Giraldo P, Conde E, Vallansot R, López-Lorenzo JL, Palomera L, Álvarez-Larrán A, Conesa V, Bautista G, Casas L, Giles F, Hochhaus A, Casado-Montero LF.

J Cancer Res Clin Oncol. 2017 Oct;143(10):2059-2066. doi: 10.1007/s00432-017-2445-z. Epub 2017 May 27. Erratum in: J Cancer Res Clin Oncol. 2018 Jan;144(1):187-188.

9.

Donor lymphocyte infusions in AML and MDS: Enhancing the graft-versus-leukemia effect.

Orti G, Barba P, Fox L, Salamero O, Bosch F, Valcarcel D.

Exp Hematol. 2017 Apr;48:1-11. doi: 10.1016/j.exphem.2016.12.004. Epub 2016 Dec 24. Review.

PMID:
28027963
10.

The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry.

Shao C, Bao B, Xie Z, Chen X, Li B, Jia X, Yao Q, Ortí G, Li W, Li X, Hamre K, Xu J, Wang L, Chen F, Tian Y, Schreiber AM, Wang N, Wei F, Zhang J, Dong Z, Gao L, Gai J, Sakamoto T, Mo S, Chen W, Shi Q, Li H, Xiu Y, Li Y, Xu W, Shi Z, Zhang G, Power DM, Wang Q, Schartl M, Chen S.

Nat Genet. 2017 Jan;49(1):119-124. doi: 10.1038/ng.3732. Epub 2016 Dec 5.

PMID:
27918537
11.

Kisspeptin system in pejerrey fish (Odontesthes bonariensis). Characterization and gene expression pattern during early developmental stages.

Tovar Bohórquez MO, Mechaly AS, Hughes LC, Campanella D, Ortí G, Canosa LF, Somoza GM.

Comp Biochem Physiol A Mol Integr Physiol. 2017 Feb;204:146-156. doi: 10.1016/j.cbpa.2016.11.014. Epub 2016 Nov 23.

PMID:
27887945
12.

Tacrolimus plus sirolimus with or without ATG as GVHD prophylaxis in HLA-mismatched unrelated donor allogeneic stem cell transplantation.

Kharfan-Dabaja MA, Parody R, Perkins J, Lopez-Godino O, Lopez-Corral L, Vazquez L, Caballero D, Falantes J, Shapiro J, Ortí G, Barba P, Valcárcel D, Esquirol A, Martino R, Piñana JL, Solano C, Tsalatsanis A, Pidala J, Anasetti C, Perez-Simón JA.

Bone Marrow Transplant. 2017 Mar;52(3):438-444. doi: 10.1038/bmt.2016.269. Epub 2016 Nov 7.

PMID:
27819684
13.

Patterns of infection and infection-related mortality in patients with steroid-refractory acute graft versus host disease.

García-Cadenas I, Rivera I, Martino R, Esquirol A, Barba P, Novelli S, Orti G, Briones J, Brunet S, Valcarcel D, Sierra J.

Bone Marrow Transplant. 2017 Jan;52(1):107-113. doi: 10.1038/bmt.2016.225. Epub 2016 Sep 5.

PMID:
27595281
14.

Annual Killifish Transcriptomics and Candidate Genes for Metazoan Diapause.

Thompson AW, Ortí G.

Mol Biol Evol. 2016 Sep;33(9):2391-5. doi: 10.1093/molbev/msw110. Epub 2016 Jun 13.

PMID:
27297470
15.

Fish-T1K (Transcriptomes of 1,000 Fishes) Project: large-scale transcriptome data for fish evolution studies.

Sun Y, Huang Y, Li X, Baldwin CC, Zhou Z, Yan Z, Crandall KA, Zhang Y, Zhao X, Wang M, Wong A, Fang C, Zhang X, Huang H, Lopez JV, Kilfoyle K, Zhang Y, Ortí G, Venkatesh B, Shi Q.

Gigascience. 2016 May 3;5:18. doi: 10.1186/s13742-016-0124-7. eCollection 2016.

16.

Erratum to: Molecular phylogeny of the subfamily Stevardiinae Gill, 1858 (Characiformes: Characidae): classification and the evolution of reproductive traits.

Thomaz AT, Arcila D, Ortí G, Malabarba LR.

BMC Evol Biol. 2015 Dec 3;15:269. doi: 10.1186/s12862-015-0489-8. No abstract available.

17.

Outcome of Second Allogeneic Hematopoietic Cell Transplantation after Relapse of Myeloid Malignancies following Allogeneic Hematopoietic Cell Transplantation: A Retrospective Cohort on Behalf of the Grupo Español de Trasplante Hematopoyetico.

Orti G, Sanz J, Bermudez A, Caballero D, Martinez C, Sierra J, Cabrera Marin JR, Espigado I, Solano C, Ferrà C, García-Noblejas A, Jimenez S, Sampol A, Yañez L, García-Gutiérrez V, Pascual MJ, Jurado M, Moraleda JM, Valcarcel D, Sanz MA, Carreras E, Duarte RF.

Biol Blood Marrow Transplant. 2016 Mar;22(3):584-8. doi: 10.1016/j.bbmt.2015.11.012. Epub 2015 Nov 26.

18.

Molecular phylogeny of the subfamily Stevardiinae Gill, 1858 (Characiformes: Characidae): classification and the evolution of reproductive traits.

Thomaz AT, Arcila D, Ortí G, Malabarba LR.

BMC Evol Biol. 2015 Jul 21;15:146. doi: 10.1186/s12862-015-0403-4. Erratum in: BMC Evol Biol. 2015;15:269.

19.

Validation of a new integrated prognostic score to predict non-relapse mortality in patients undergoing reduced-intensity conditioning allogeneic hematopoietic cell transplantation.

Barba P, Martino R, Orti G, Esquirol A, Perez-Hoyos S, Sierra J, Valcárcel D.

Bone Marrow Transplant. 2015 Oct;50(10):1371-4. doi: 10.1038/bmt.2015.144. Epub 2015 Jun 22. No abstract available.

PMID:
26098954
20.

Concatenation and Species Tree Methods Exhibit Statistically Indistinguishable Accuracy under a Range of Simulated Conditions.

Tonini J, Moore A, Stern D, Shcheglovitova M, Ortí G.

PLoS Curr. 2015 Mar 9;7. pii: ecurrents.tol.34260cc27551a527b124ec5f6334b6be. doi: 10.1371/currents.tol.34260cc27551a527b124ec5f6334b6be.

21.

Bendamustine, thalidomide and dexamethasone combination therapy for relapsed/refractory myeloma patients: results of the MUKone randomized dose selection trial.

Schey S, Brown SR, Tillotson AL, Yong K, Williams C, Davies F, Morgan G, Cavenagh J, Cook G, Cook M, Orti G, Morris C, Sherratt D, Flanagan L, Gregory W, Cavet J; Myeloma UK Early Phase Clinical Trial Network.

Br J Haematol. 2015 Aug;170(3):336-48. doi: 10.1111/bjh.13435. Epub 2015 Apr 20.

PMID:
25891006
22.

Fossil-based comparative analyses reveal ancient marine ancestry erased by extinction in ray-finned fishes.

Betancur-R R, Ortí G, Pyron RA.

Ecol Lett. 2015 May;18(5):441-50. doi: 10.1111/ele.12423. Epub 2015 Mar 23.

PMID:
25808114
23.

Multi-locus fossil-calibrated phylogeny of Atheriniformes (Teleostei, Ovalentaria).

Campanella D, Hughes LC, Unmack PJ, Bloom DD, Piller KR, Ortí G.

Mol Phylogenet Evol. 2015 May;86:8-23. doi: 10.1016/j.ympev.2015.03.001. Epub 2015 Mar 10.

PMID:
25769409
24.

Impact of Epstein Barr virus-related complications after high-risk allo-SCT in the era of pre-emptive rituximab.

García-Cadenas I, Castillo N, Martino R, Barba P, Esquirol A, Novelli S, Orti G, Garrido A, Saavedra S, Moreno C, Granell M, Briones J, Brunet S, Navarro F, Ruiz I, Rabella N, Valcárcel D, Sierra J.

Bone Marrow Transplant. 2015 Apr;50(4):579-84. doi: 10.1038/bmt.2014.298. Epub 2015 Jan 12.

PMID:
25581404
25.

An evaluation of fossil tip-dating versus node-age calibrations in tetraodontiform fishes (Teleostei: Percomorphaceae).

Arcila D, Alexander Pyron R, Tyler JC, Ortí G, Betancur-R R.

Mol Phylogenet Evol. 2015 Jan;82 Pt A:131-45. doi: 10.1016/j.ympev.2014.10.011. Epub 2014 Oct 24.

PMID:
25462998
26.

A time-calibrated, multi-locus phylogeny of piranhas and pacus (Characiformes: Serrasalmidae) and a comparison of species tree methods.

Thompson AW, Betancur-R R, López-Fernández H, Ortí G.

Mol Phylogenet Evol. 2014 Dec;81:242-57. doi: 10.1016/j.ympev.2014.06.018. Epub 2014 Sep 28.

PMID:
25261120
27.

Molecular evidence for the monophyly of flatfishes (Carangimorpharia: Pleuronectiformes).

Betancur-R R, Ortí G.

Mol Phylogenet Evol. 2014 Apr;73:18-22. doi: 10.1016/j.ympev.2014.01.006. Epub 2014 Jan 18.

PMID:
24447882
28.

Conserved genes, sampling error, and phylogenomic inference.

Betancur-R R, Naylor GJ, Ortí G.

Syst Biol. 2014 Mar;63(2):257-62. doi: 10.1093/sysbio/syt073. Epub 2013 Nov 30. No abstract available.

PMID:
24293251
29.

Testing mitochondrial capture and deep coalescence in Amazonian cichlid fishes (Cichlidae: Cichla).

Willis SC, Farias IP, Ortí G.

Evolution. 2014 Jan;68(1):256-68. doi: 10.1111/evo.12230. Epub 2013 Oct 10.

PMID:
24116712
30.

Seasonal variation in genetic population structure of sábalo (Prochilodus lineatus) in the Lower Uruguay River.

Rueda EC, Carriquiriborde P, Monzón AM, Somoza GM, Ortí G.

Genetica. 2013 Sep;141(7-9):401-7. doi: 10.1007/s10709-013-9739-0. Epub 2013 Sep 26.

PMID:
24068426
31.

Multi-locus species tree for the Amazonian peacock basses (Cichlidae: Cichla): emergent phylogenetic signal despite limited nuclear variation.

Willis SC, Farias IP, Ortí G.

Mol Phylogenet Evol. 2013 Dec;69(3):479-90. doi: 10.1016/j.ympev.2013.07.031. Epub 2013 Aug 9.

PMID:
23939135
32.

Multi-locus phylogenetic analysis reveals the pattern and tempo of bony fish evolution.

Broughton RE, Betancur-R R, Li C, Arratia G, Ortí G.

PLoS Curr. 2013 Apr 16;5. pii: ecurrents.tol.2ca8041495ffafd0c92756e75247483e. doi: 10.1371/currents.tol.2ca8041495ffafd0c92756e75247483e.

33.

Addressing gene tree discordance and non-stationarity to resolve a multi-locus phylogeny of the flatfishes (Teleostei: Pleuronectiformes).

Betancur-R R, Li C, Munroe TA, Ballesteros JA, Ortí G.

Syst Biol. 2013 Sep;62(5):763-85. doi: 10.1093/sysbio/syt039. Epub 2013 Jun 8.

PMID:
23749787
34.

The tree of life and a new classification of bony fishes.

Betancur-R R, Broughton RE, Wiley EO, Carpenter K, López JA, Li C, Holcroft NI, Arcila D, Sanciangco M, Cureton Ii JC, Zhang F, Buser T, Campbell MA, Ballesteros JA, Roa-Varon A, Willis S, Borden WC, Rowley T, Reneau PC, Hough DJ, Lu G, Grande T, Arratia G, Ortí G.

PLoS Curr. 2013 Apr 18;5. pii: ecurrents.tol.53ba26640df0ccaee75bb165c8c26288. doi: 10.1371/currents.tol.53ba26640df0ccaee75bb165c8c26288.

35.

Composition and interrelationships of a large Neotropical freshwater fish group, the subfamily Cheirodontinae (Characiformes: Characidae): a case study based on mitochondrial and nuclear DNA sequences.

Mariguela TC, Ortí G, Avelino GS, Abe KT, Oliveira C.

Mol Phylogenet Evol. 2013 Jul;68(1):23-34. doi: 10.1016/j.ympev.2013.03.011. Epub 2013 Mar 26.

PMID:
23541838
36.

Mega-Bites: extreme jaw forces of living and extinct piranhas (Serrasalmidae).

Grubich JR, Huskey S, Crofts S, Orti G, Porto J.

Sci Rep. 2012;2:1009. doi: 10.1038/srep01009. Epub 2012 Dec 20.

37.

Permanent genetic resources added to molecular ecology resources database 1 April 2012 - 31 May 2012.

Molecular Ecology Resources Primer Development Consortium, Abelló P, Ai W, Altmann C, Bernardi G, Bonato O, Burchhardt KM, Chen X, Chen Z, Cížková D, Clouet C, Cubeta MA, Garcia-Merchan VH, Gauthier N, Gibson S, Halačka K, Hamdi F, Hankeln T, Hochkirch A, Hrbek T, Jackson AM, Lin C, Lin SM, Macpherson E, Macrander J, Marešová E, Mendel J, Nowak M, Orti G, Palero F, Papoušek I, Pascual M, Schmitt T, Semmens BX, Streito JC, Tian EW, Tseng SP, Veith M, Vetešník L, Wang HY, Weyer J, Willis S, Yu H, Zhou Z.

Mol Ecol Resour. 2012 Sep;12(5):972-4. doi: 10.1111/j.1755-0998.2012.03173.x. Epub 2012 Aug 1.

PMID:
22898144
38.

The fishes of Genome 10K.

Bernardi G, Wiley EO, Mansour H, Miller MR, Orti G, Haussler D, O'Brien SJ, Ryder OA, Venkatesh B.

Mar Genomics. 2012 Sep;7:3-6. doi: 10.1016/j.margen.2012.02.002. Epub 2012 Mar 24.

PMID:
22897955
39.
40.

Apparent signal of competition limiting diversification after ecological transitions from marine to freshwater habitats.

Betancur-R R, Ortí G, Stein AM, Marceniuk AP, Alexander Pyron R.

Ecol Lett. 2012 Aug;15(8):822-30. doi: 10.1111/j.1461-0248.2012.01802.x. Epub 2012 Jun 6.

PMID:
22672567
41.

Four events of host switching in Aspidoderidae (Nematoda) involve convergent lineages of mammals.

Jiménez FA, Gardner SL, Navone G, Ortí G.

J Parasitol. 2012 Dec;98(6):1166-75. doi: 10.1645/GE-3045.1. Epub 2012 Jun 4.

PMID:
22663159
42.

Species-level phylogeny of 'Satan's perches' based on discordant gene trees (Teleostei: Cichlidae: Satanoperca Günther 1862).

Willis SC, López-Fernández H, Montaña CG, Farias IP, Ortí G.

Mol Phylogenet Evol. 2012 Jun;63(3):798-808. doi: 10.1016/j.ympev.2012.02.018. Epub 2012 Mar 2.

PMID:
22406409
43.

Dasatinib as salvage therapy for steroid refractory and imatinib resistant or intolerant sclerotic chronic graft-versus-host disease.

Sánchez-Ortega I, Servitje O, Arnan M, Ortí G, Peralta T, Manresa F, Duarte RF.

Biol Blood Marrow Transplant. 2012 Feb;18(2):318-23. doi: 10.1016/j.bbmt.2011.10.042. Epub 2011 Nov 7.

44.

Isolation and characterization of eight polymorphic microsatellite markers for the migratory characiform fish, Salminus brasiliensis.

Rueda EC, Amavet P, Brancolini F, Sommer J, Ortí G.

J Fish Biol. 2011 Nov;79(5):1370-5. doi: 10.1111/j.1095-8649.2011.03109.x. Epub 2011 Sep 29.

PMID:
22026613
45.

Phylogenetic relationships within the speciose family Characidae (Teleostei: Ostariophysi: Characiformes) based on multilocus analysis and extensive ingroup sampling.

Oliveira C, Avelino GS, Abe KT, Mariguela TC, Benine RC, Ortí G, Vari RP, Corrêa e Castro RM.

BMC Evol Biol. 2011 Sep 26;11:275. doi: 10.1186/1471-2148-11-275.

46.

Invasive aspergillosis complicating pandemic influenza A (H1N1) infection in severely immunocompromised patients.

Garcia-Vidal C, Barba P, Arnan M, Moreno A, Ruiz-Camps I, Gudiol C, Ayats J, Ortí G, Carratalà J.

Clin Infect Dis. 2011 Sep;53(6):e16-9. doi: 10.1093/cid/cir485.

PMID:
21865184
47.

Monophyly and interrelationships of Snook and Barramundi (Centropomidae sensu Greenwood) and five new markers for fish phylogenetics.

Li C, Ricardo BR, Smith WL, Ortí G.

Mol Phylogenet Evol. 2011 Sep;60(3):463-71. doi: 10.1016/j.ympev.2011.05.004. Epub 2011 May 12.

PMID:
21600996
48.

Molecular systematics of the neotropical shovelnose catfish genus Pseudoplatystoma Bleeker 1862 based on nuclear and mtDNA markers.

Carvalho-Costa LF, Piorski NM, Willis SC, Galetti PM Jr, Ortí G.

Mol Phylogenet Evol. 2011 Apr;59(1):177-94. doi: 10.1016/j.ympev.2011.02.005. Epub 2011 Feb 16.

PMID:
21315164
49.

Impact of in vivo alemtuzumab dose before reduced intensity conditioning and HLA-identical sibling stem cell transplantation: pharmacokinetics, GVHD, and immune reconstitution.

Chakraverty R, Orti G, Roughton M, Shen J, Fielding A, Kottaridis P, Milligan D, Collin M, Crawley C, Johnson P, Clark A, Parker A, Bloor A, Pettengell R, Snowden J, Pettitt A, Clark R, Hale G, Peggs K, Thomson K, Morris E, Mackinnon S.

Blood. 2010 Oct 21;116(16):3080-8. doi: 10.1182/blood-2010-05-286856. Epub 2010 Jun 29.

50.

The phylogenetic placement of sinipercid fishes ("Perciformes") revealed by 11 nuclear loci.

Li C, Ortí G, Zhao J.

Mol Phylogenet Evol. 2010 Sep;56(3):1096-104. doi: 10.1016/j.ympev.2010.05.017. Epub 2010 May 28.

PMID:
20546903

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