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Items: 1 to 50 of 62

1.

Computer genomics research at the bioinformatics conference series in Novosibirsk.

Orlov YL, Galieva ER, Melerzanov AV.

BMC Genomics. 2019 Jul 11;20(Suppl 7):537. doi: 10.1186/s12864-019-5846-3. No abstract available.

2.

Medical genetics studies at BGRS conference series.

Baranova AV, Skoblov MY, Voropaeva EN, Shanmughavel P, Orlov YL.

BMC Med Genet. 2019 Apr 9;20(Suppl 1):50. doi: 10.1186/s12881-019-0769-z. No abstract available.

3.

Computational models in genetics at BGRS-2018.

Orlov YL, Tatarinova TV, Kochetov AV.

BMC Genet. 2019 Mar 18;20(Suppl 1):28. doi: 10.1186/s12863-019-0724-1. No abstract available.

4.

Medical genomics research at BGRS-2018.

Baranova AV, Klimontov VV, Letyagin AY, Orlov YL.

BMC Med Genomics. 2019 Mar 13;12(Suppl 2):36. doi: 10.1186/s12920-019-0480-0. No abstract available.

5.

Clinical aspects of TP53 gene inactivation in diffuse large B-cell lymphoma.

Voropaeva EN, Pospelova TI, Voevoda MI, Maksimov VN, Orlov YL, Seregina OB.

BMC Med Genomics. 2019 Mar 13;12(Suppl 2):35. doi: 10.1186/s12920-019-0484-9.

6.

Bioinformatics research at BGRS \ SB-2018.

Orlov YL, Hofestädt R, Tatarinova TV.

J Bioinform Comput Biol. 2019 Feb;17(1):1902001. doi: 10.1142/S0219720019020013. No abstract available.

PMID:
30866731
7.

Systems biology research at BGRS-2018.

Orlov YL, Hofestädt R, Baranova AV.

BMC Syst Biol. 2019 Mar 5;13(Suppl 1):21. doi: 10.1186/s12918-019-0685-z. No abstract available.

8.

Evolutionary biology and biodiversity research at BGRS-2018.

Orlov YL, Baranova AV, Kolchanov NA, Moroz LL.

BMC Evol Biol. 2019 Feb 26;19(Suppl 1):43. doi: 10.1186/s12862-019-1368-5. No abstract available.

9.

Plant biology research at BGRS-2018.

Orlov YL, Salina EA, Eslami G, Kochetov AV.

BMC Plant Biol. 2019 Feb 15;19(Suppl 1):56. doi: 10.1186/s12870-019-1634-0. No abstract available.

10.

Bioinformatics research at BGRS-2018.

Tatarinova TV, Chen M, Orlov YL.

BMC Bioinformatics. 2019 Feb 5;20(Suppl 1):33. doi: 10.1186/s12859-018-2566-7. No abstract available.

11.

Neuroscience researches at Belyaev conference-2017.

Orlov YL, Moroz LL, Baranova AV.

BMC Neurosci. 2018 Apr 19;19(Suppl 1):14. doi: 10.1186/s12868-018-0410-7. No abstract available.

12.

Genomics at Belyaev conference - 2017.

Orlov YL, Baranova AV, Hofestädt R, Kolchanov NA.

BMC Genomics. 2018 Feb 9;19(Suppl 3):79. doi: 10.1186/s12864-018-4476-5. No abstract available.

13.

Medical genomics at Belyaev Conference - 2017.

Orlov YL, Fernandez-Masso JR, Chen M, Baranova AV.

BMC Med Genomics. 2018 Feb 13;11(Suppl 1):11. doi: 10.1186/s12920-018-0324-3. No abstract available.

14.

Novel read density distribution score shows possible aligner artefacts, when mapping a single chromosome.

Naumenko FM, Abnizova II, Beka N, Genaev MA, Orlov YL.

BMC Genomics. 2018 Feb 9;19(Suppl 3):92. doi: 10.1186/s12864-018-4475-6.

15.

Introduction to the 9th Young Scientists School on Systems Biology and Bioinformatics (SBB'2017).

Orlov YL, Tatarinova TV, Zakhartsev MV, Kolchanov NA.

J Bioinform Comput Biol. 2018 Feb;16(1):1802001. doi: 10.1142/S0219720018020018. Epub 2018 Feb 13. No abstract available.

PMID:
29439645
16.

Plant Biology at Belyaev Conference - 2017.

Orlov YL, Baranova AV, Chen M, Salina EA.

BMC Plant Biol. 2017 Dec 28;17(Suppl 2):257. doi: 10.1186/s12870-017-1189-x. No abstract available.

17.

Evolutionary Biology at Belyaev Conference - 2017.

Orlov YL, Baranova AV, Herbeck YE.

BMC Evol Biol. 2017 Dec 28;17(Suppl 2):260. doi: 10.1186/s12862-017-1102-0. No abstract available.

18.

Genetics at Belyaev Conference - 2017: introductory note.

Orlov YL, Baranova AV, Tatarinova TV, Kolchanov NA.

BMC Genet. 2017 Dec 28;18(Suppl 1):116. doi: 10.1186/s12863-017-0577-4. No abstract available.

19.

[Differential alternative splicing in brain regions of rats selected for aggressive behavior].

Babenko VN, Bragin AO, Chadaeva IV, Markel AL, Orlov YL.

Mol Biol (Mosk). 2017 Sep-Oct;51(5):870-880. doi: 10.7868/S0026898417050159. Russian.

20.

[Computer methods of analysis of chromosome contacts in the cell nucleus based on sequencing technology data].

Orlov YL, Thierry O, Bogomolov AG, Tsukanov AV, Kulakova EV, Galieva ER, Bragin AO, Li G.

Biomed Khim. 2017 Oct;63(5):418-422. doi: 10.18097/PBMC20176305418. Russian.

PMID:
29080874
21.

Non-coding RNAs and Their Roles in Stress Response in Plants.

Wang J, Meng X, Dobrovolskaya OB, Orlov YL, Chen M.

Genomics Proteomics Bioinformatics. 2017 Oct;15(5):301-312. doi: 10.1016/j.gpb.2017.01.007. Epub 2017 Oct 7. Review.

22.

Computer Analysis of Glioma Transcriptome Profiling: Alternative Splicing Events.

Babenko VN, Gubanova NV, Bragin AO, Chadaeva IV, Vasiliev GV, Medvedeva IV, Gaytan AS, Krivoshapkin AL, Orlov YL.

J Integr Bioinform. 2017 Sep 18;14(3). pii: /j/jib.2017.14.issue-3/jib-2017-0022/jib-2017-0022.xml. doi: 10.1515/jib-2017-0022.

23.

[Serotonergic genes in the development of anxiety/depression-like state and pathology of aggressive behavior in male mice: RNA-seq data].

Kudryavtseva NN, Smagin DA, Kovalenko IL, Galyamina AG, Vishnivetskaya GB, Babenko VN, Orlov YL.

Mol Biol (Mosk). 2017 Mar-Apr;51(2):288-300. doi: 10.7868/S0026898417020136. Russian.

24.

Editorial - Bioinformatics development at the BGRS\SB conference series: 10th anniversary.

Orlov YL, Kolchanov NA, Hofestädt R, Wong L.

J Bioinform Comput Biol. 2017 Apr;15(2):1702001. doi: 10.1142/S0219720017020012. Epub 2017 Mar 20. No abstract available.

PMID:
28317416
25.

Genomic landscape of CpG rich elements in human.

Babenko VN, Chadaeva IV, Orlov YL.

BMC Evol Biol. 2017 Feb 7;17(Suppl 1):19. doi: 10.1186/s12862-016-0864-0.

26.

Evolutionary biology at BGRS\SB-2016.

Baranova AV, Orlov YL.

BMC Evol Biol. 2017 Feb 7;17(Suppl 1):21. doi: 10.1186/s12862-016-0869-8. No abstract available.

27.

Analysis of differential gene expression by RNA-seq data in brain areas of laboratory animals.

Babenko VN, Bragin AO, Spitsina AM, Chadaeva IV, Galieva ER, Orlova GV, Medvedeva IV, Orlov YL.

J Integr Bioinform. 2016 Dec 18;13(4):292. doi: 10.2390/biecoll-jib-2016-292.

PMID:
28187408
28.

Computational plant bioscience at BGRS\SB-2016: introductory note.

Orlov YL, Baranova AV, Salina EA.

BMC Plant Biol. 2016 Nov 16;16(Suppl 3):243. doi: 10.1186/s12870-016-0923-0. No abstract available.

29.

Computational models in genetics at BGRS\SB-2016: introductory note.

Orlov YL, Baranova AV, Markel AL.

BMC Genet. 2016 Dec 22;17(Suppl 3):155. doi: 10.1186/s12863-016-0465-3. No abstract available.

30.

Computational genomics at BGRS\SB-2016: introductory note.

Orlov YL, Baranova AV, Hofestädt R, Kolchanov NA.

BMC Genomics. 2016 Dec 28;17(Suppl 14):996. doi: 10.1186/s12864-016-3350-6. No abstract available.

31.

Heterogeneity of Brain Ribosomal Genes Expression Following Positive Fighting Experience in Male Mice as Revealed by RNA-Seq.

Smagin DA, Kovalenko IL, Galyamina AG, Orlov YL, Babenko VN, Kudryavtseva NN.

Mol Neurobiol. 2018 Jan;55(1):390-401. doi: 10.1007/s12035-016-0327-z. Epub 2016 Dec 12.

PMID:
27957683
32.

[Changes in the Expression of Dopaminergic Genes in Brain Structures of Male Mice Exposed to Chronic Social Defeat Stress: An RNA-seq Study].

Kovalenko IL, Smagin DA, Galyamina AG, Orlov YL, Kudryavtseva NN.

Mol Biol (Mosk). 2016 Jan-Feb;50(1):184-7. doi: 10.7868/S0026898416010080. Russian.

33.

Dysfunction in Ribosomal Gene Expression in the Hypothalamus and Hippocampus following Chronic Social Defeat Stress in Male Mice as Revealed by RNA-Seq.

Smagin DA, Kovalenko IL, Galyamina AG, Bragin AO, Orlov YL, Kudryavtseva NN.

Neural Plast. 2016;2016:3289187. doi: 10.1155/2016/3289187. Epub 2015 Dec 29.

34.

The papers presented at 7th Young Scientists School "Systems Biology and Bioinformatics" (SBB'15): Introductory Note. Introduction.

Baranova AV, Orlov YL.

BMC Genet. 2016 Jan 27;17 Suppl 1:20. doi: 10.1186/s12863-015-0326-5. No abstract available.

35.

Regulatory single nucleotide polymorphisms at the beginning of intron 2 of the human KRAS gene.

Antontseva EV, Matveeva MY, Bondar NP, Kashina EV, Leberfarb EY, Bryzgalov LO, Gervas PA, Ponomareva AA, Cherdyntseva NV, Orlov YL, Merkulova TI.

J Biosci. 2015 Dec;40(5):873-83.

PMID:
26648033
36.

Association Analysis of Genetic Variants with Type 2 Diabetes in a Mongolian Population in China.

Bai H, Liu H, Suyalatu S, Guo X, Chu S, Chen Y, Lan T, Borjigin B, Orlov YL, Posukh OL, Yang X, Guilan G, Osipova LP, Wu Q, Narisu N.

J Diabetes Res. 2015;2015:613236. doi: 10.1155/2015/613236. Epub 2015 Jul 28.

37.

[Regulatory Genomics: Integrated Experimental and Computer Approaches].

Ignatieva EV, Podkolodnaya OA, Orlov YL, Vasiliev GV, Kolchanov NA.

Genetika. 2015 Apr;51(4):409-29. Review. Russian.

PMID:
26087618
38.

Introductory note for BGRS\SB-2014 special issue.

Orlov YL, Hofestädt RM, Kolchanov NA.

J Bioinform Comput Biol. 2015 Feb;13(1):1502001. doi: 10.1142/S0219720015020011. No abstract available.

PMID:
25666651
39.

FRIZZY PANICLE drives supernumerary spikelets in bread wheat.

Dobrovolskaya O, Pont C, Sibout R, Martinek P, Badaeva E, Murat F, Chosson A, Watanabe N, Prat E, Gautier N, Gautier V, Poncet C, Orlov YL, Krasnikov AA, Bergès H, Salina E, Laikova L, Salse J.

Plant Physiol. 2015 Jan;167(1):189-99. doi: 10.1104/pp.114.250043. Epub 2014 Nov 14.

40.

Association of AMD-like retinopathy development with an Alzheimer's disease metabolic pathway in OXYS rats.

Kozhevnikova OS, Korbolina EE, Stefanova NA, Muraleva NA, Orlov YL, Kolosova NG.

Biogerontology. 2013 Dec;14(6):753-62. doi: 10.1007/s10522-013-9439-2.

PMID:
23959258
41.

INTRODUCTORY NOTE FOR BGRS-2012 SPECIAL ISSUE.

Kolchanov NA, Orlov YL.

J Bioinform Comput Biol. 2013 Feb;11(1):1302001. doi: 10.1142/S0219720013020010. Epub 2013 Jan 28. No abstract available.

PMID:
28847203
42.

Translation efficiency in yeasts correlates with nucleosome formation in promoters.

Matushkin YG, Levitsky VG, Orlov YL, Likhoshvai VA, Kolchanov NA.

J Biomol Struct Dyn. 2013;31(1):96-102. doi: 10.1080/07391102.2012.691366. Epub 2012 Jul 18.

PMID:
22803765
43.

Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation.

Li G, Ruan X, Auerbach RK, Sandhu KS, Zheng M, Wang P, Poh HM, Goh Y, Lim J, Zhang J, Sim HS, Peh SQ, Mulawadi FH, Ong CT, Orlov YL, Hong S, Zhang Z, Landt S, Raha D, Euskirchen G, Wei CL, Ge W, Wang H, Davis C, Fisher-Aylor KI, Mortazavi A, Gerstein M, Gingeras T, Wold B, Sun Y, Fullwood MJ, Cheung E, Liu E, Sung WK, Snyder M, Ruan Y.

Cell. 2012 Jan 20;148(1-2):84-98. doi: 10.1016/j.cell.2011.12.014.

44.

Graded Nodal/Activin signaling titrates conversion of quantitative phospho-Smad2 levels into qualitative embryonic stem cell fate decisions.

Lee KL, Lim SK, Orlov YL, Yit le Y, Yang H, Ang LT, Poellinger L, Lim B.

PLoS Genet. 2011 Jun;7(6):e1002130. doi: 10.1371/journal.pgen.1002130. Epub 2011 Jun 23.

45.

Integrative model of genomic factors for determining binding site selection by estrogen receptor-α.

Joseph R, Orlov YL, Huss M, Sun W, Kong SL, Ukil L, Pan YF, Li G, Lim M, Thomsen JS, Ruan Y, Clarke ND, Prabhakar S, Cheung E, Liu ET.

Mol Syst Biol. 2010 Dec 21;6:456. doi: 10.1038/msb.2010.109.

46.

Transcription factors for the modulation of pluripotency and reprogramming.

Heng JC, Orlov YL, Ng HH.

Cold Spring Harb Symp Quant Biol. 2010;75:237-44. doi: 10.1101/sqb.2010.75.003. Epub 2010 Nov 3. Review.

PMID:
21047904
47.

A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity.

Chia NY, Chan YS, Feng B, Lu X, Orlov YL, Moreau D, Kumar P, Yang L, Jiang J, Lau MS, Huss M, Soh BS, Kraus P, Li P, Lufkin T, Lim B, Clarke ND, Bard F, Ng HH.

Nature. 2010 Nov 11;468(7321):316-20. doi: 10.1038/nature09531. Epub 2010 Oct 17.

PMID:
20953172
48.

Repeats, longevity and the sources of mtDNA deletions: evidence from 'deletional spectra'.

Guo X, Popadin KY, Markuzon N, Orlov YL, Kraytsberg Y, Krishnan KJ, Zsurka G, Turnbull DM, Kunz WS, Khrapko K.

Trends Genet. 2010 Aug;26(8):340-3. doi: 10.1016/j.tig.2010.05.006. Epub 2010 Jun 28.

49.

Tbx3 improves the germ-line competency of induced pluripotent stem cells.

Han J, Yuan P, Yang H, Zhang J, Soh BS, Li P, Lim SL, Cao S, Tay J, Orlov YL, Lufkin T, Ng HH, Tam WL, Lim B.

Nature. 2010 Feb 25;463(7284):1096-100. doi: 10.1038/nature08735. Epub 2010 Feb 7.

50.

The nuclear receptor Nr5a2 can replace Oct4 in the reprogramming of murine somatic cells to pluripotent cells.

Heng JC, Feng B, Han J, Jiang J, Kraus P, Ng JH, Orlov YL, Huss M, Yang L, Lufkin T, Lim B, Ng HH.

Cell Stem Cell. 2010 Feb 5;6(2):167-74. doi: 10.1016/j.stem.2009.12.009. Epub 2010 Jan 21.

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