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Items: 1 to 50 of 96

1.

Hidden genomic evolution in a morphospecies-The landscape of rapidly evolving genes in Tetrahymena.

Xiong J, Yang W, Chen K, Jiang C, Ma Y, Chai X, Yan G, Wang G, Yuan D, Liu Y, Bidwell SL, Zafar N, Hadjithomas M, Krishnakumar V, Coyne RS, Orias E, Miao W.

PLoS Biol. 2019 Jun 3;17(6):e3000294. doi: 10.1371/journal.pbio.3000294. eCollection 2019 Jun.

2.

Resistance to 6-Methylpurine is Conferred by Defective Adenine Phosphoribosyltransferase in Tetrahymena.

Akematsu T, Findlay A, Fukuda Y, Pearlman RE, Loidl J, Orias E, P Hamilton E.

Genes (Basel). 2018 Mar 23;9(4). pii: E179. doi: 10.3390/genes9040179.

3.

A germline-limited piggyBac transposase gene is required for precise excision in Tetrahymena genome rearrangement.

Feng L, Wang G, Hamilton EP, Xiong J, Yan G, Chen K, Chen X, Dui W, Plemens A, Khadr L, Dhanekula A, Juma M, Dang HQ, Kapler GM, Orias E, Miao W, Liu Y.

Nucleic Acids Res. 2017 Sep 19;45(16):9481-9502. doi: 10.1093/nar/gkx652.

4.

Genetics and Epigenetics of Mating Type Determination in Paramecium and Tetrahymena.

Orias E, Singh DP, Meyer E.

Annu Rev Microbiol. 2017 Sep 8;71:133-156. doi: 10.1146/annurev-micro-090816-093342. Epub 2017 Jul 17. Review.

PMID:
28715961
5.

In Memoriam: David L. Nanney (1925-2016): Tetrahymena Genetics Founder and Epigenetics Champion.

Orias E, Frankel J.

Genetics. 2016 Dec;204(4):1633-1634. Epub 2016 Dec 7. No abstract available.

6.

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome.

Hamilton EP, Kapusta A, Huvos PE, Bidwell SL, Zafar N, Tang H, Hadjithomas M, Krishnakumar V, Badger JH, Caler EV, Russ C, Zeng Q, Fan L, Levin JZ, Shea T, Young SK, Hegarty R, Daza R, Gujja S, Wortman JR, Birren BW, Nusbaum C, Thomas J, Carey CM, Pritham EJ, Feschotte C, Noto T, Mochizuki K, Papazyan R, Taverna SD, Dear PH, Cassidy-Hanley DM, Xiong J, Miao W, Orias E, Coyne RS.

Elife. 2016 Nov 28;5. pii: e19090. doi: 10.7554/eLife.19090.

7.

Bioaccumulation of Multiwall Carbon Nanotubes in Tetrahymena thermophila by Direct Feeding or Trophic Transfer.

Mortimer M, Petersen EJ, Buchholz BA, Orias E, Holden PA.

Environ Sci Technol. 2016 Aug 16;50(16):8876-85. doi: 10.1021/acs.est.6b01916. Epub 2016 Jul 26.

8.

Tetrahymena as a Unicellular Model Eukaryote: Genetic and Genomic Tools.

Ruehle MD, Orias E, Pearson CG.

Genetics. 2016 Jun;203(2):649-65. doi: 10.1534/genetics.114.169748. Review.

9.

Correction: Selecting One of Several Mating Types through Gene Segment Joining and Deletion in Tetrahymena thermophila.

Cervantes MD, Hamilton EP, Xiong J, Lawson MJ, Yuan D, Hadjithomas M, Miao W, Orias E.

PLoS Biol. 2015 Oct 21;13(10):e1002284. doi: 10.1371/journal.pbio.1002284. eCollection 2015 Oct. No abstract available.

10.

Membrane fusion: HAP2 protein on a short leash.

Orias E.

Curr Biol. 2014 Sep 22;24(18):R831-R833. doi: 10.1016/j.cub.2014.08.004.

11.

Differential growth of and nanoscale TiO₂ accumulation in Tetrahymena thermophila by direct feeding versus trophic transfer from Pseudomonas aeruginosa.

Mielke RE, Priester JH, Werlin RA, Gelb J, Horst AM, Orias E, Holden PA.

Appl Environ Microbiol. 2013 Sep;79(18):5616-24. doi: 10.1128/AEM.01680-13. Epub 2013 Jul 12.

12.

Selecting one of several mating types through gene segment joining and deletion in Tetrahymena thermophila.

Cervantes MD, Hamilton EP, Xiong J, Lawson MJ, Yuan D, Hadjithomas M, Miao W, Orias E.

PLoS Biol. 2013;11(3):e1001518. doi: 10.1371/journal.pbio.1001518. Epub 2013 Mar 26. Erratum in: PLoS Biol. 2015 Oct;13(10):e1002284.

13.

Tetrahymena thermophila genetics: concepts and applications.

Orias E.

Methods Cell Biol. 2012;109:301-25. doi: 10.1016/B978-0-12-385967-9.00010-4.

PMID:
22444149
14.

Genome-Scale Analysis of Programmed DNA Elimination Sites in Tetrahymena thermophila.

Fass JN, Joshi NA, Couvillion MT, Bowen J, Gorovsky MA, Hamilton EP, Orias E, Hong K, Coyne RS, Eisen JA, Chalker DL, Lin D, Collins K.

G3 (Bethesda). 2011 Nov;1(6):515-22. doi: 10.1534/g3.111.000927. Epub 2011 Nov 1.

15.

Transcriptome analysis of the model protozoan, Tetrahymena thermophila, using Deep RNA sequencing.

Xiong J, Lu X, Zhou Z, Chang Y, Yuan D, Tian M, Zhou Z, Wang L, Fu C, Orias E, Miao W.

PLoS One. 2012;7(2):e30630. doi: 10.1371/journal.pone.0030630. Epub 2012 Feb 7.

16.

Tetrahymena thermophila, a unicellular eukaryote with separate germline and somatic genomes.

Orias E, Cervantes MD, Hamilton EP.

Res Microbiol. 2011 Jul-Aug;162(6):578-86. doi: 10.1016/j.resmic.2011.05.001. Epub 2011 May 18. Review.

17.

Biomagnification of cadmium selenide quantum dots in a simple experimental microbial food chain.

Werlin R, Priester JH, Mielke RE, Krämer S, Jackson S, Stoimenov PK, Stucky GD, Cherr GN, Orias E, Holden PA.

Nat Nanotechnol. 2011 Jan;6(1):65-71. doi: 10.1038/nnano.2010.251. Epub 2010 Dec 19.

PMID:
21170041
18.

Microarray analyses of gene expression during the Tetrahymena thermophila life cycle.

Miao W, Xiong J, Bowen J, Wang W, Liu Y, Braguinets O, Grigull J, Pearlman RE, Orias E, Gorovsky MA.

PLoS One. 2009;4(2):e4429. doi: 10.1371/journal.pone.0004429. Epub 2009 Feb 10.

19.

Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure.

Coyne RS, Thiagarajan M, Jones KM, Wortman JR, Tallon LJ, Haas BJ, Cassidy-Hanley DM, Wiley EA, Smith JJ, Collins K, Lee SR, Couvillion MT, Liu Y, Garg J, Pearlman RE, Hamilton EP, Orias E, Eisen JA, Methé BA.

BMC Genomics. 2008 Nov 26;9:562. doi: 10.1186/1471-2164-9-562.

20.

Tetrahymena metallothioneins fall into two discrete subfamilies.

Díaz S, Amaro F, Rico D, Campos V, Benítez L, Martín-González A, Hamilton EP, Orias E, Gutiérrez JC.

PLoS One. 2007 Mar 14;2(3):e291.

21.

Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote.

Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK Jr, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA, Krieger CJ, del Toro C, Ryder HF, Williamson SC, Barbeau RA, Hamilton EP, Orias E.

PLoS Biol. 2006 Sep;4(9):e286.

22.

Use of HAPPY mapping for the higher order assembly of the Tetrahymena genome.

Hamilton EP, Dear PH, Rowland T, Saks K, Eisen JA, Orias E.

Genomics. 2006 Oct;88(4):443-51. Epub 2006 Jun 19.

24.

The highly conserved family of Tetrahymena thermophila chromosome breakage elements contains an invariant 10-base-pair core.

Hamilton EP, Williamson S, Dunn S, Merriam V, Lin C, Vong L, Russell-Colantonio J, Orias E.

Eukaryot Cell. 2006 Apr;5(4):771-80.

25.

Genome-wide characterization of tetrahymena thermophila chromosome breakage sites. I. Cloning and identification of functional sites.

Hamilton E, Bruns P, Lin C, Merriam V, Orias E, Vong L, Cassidy-Hanley D.

Genetics. 2005 Aug;170(4):1611-21. Epub 2005 Jun 14.

26.

Genome-wide characterization of Tetrahymena thermophila chromosome breakage sites. II. Physical and genetic mapping.

Cassidy-Hanley D, Bisharyan Y, Fridman V, Gerber J, Lin C, Orias E, Orias JD, Ryder H, Vong L, Hamilton EP.

Genetics. 2005 Aug;170(4):1623-31. Epub 2005 Jun 14.

27.

Analysis of expressed sequence tags (ESTs) in the ciliated protozoan Tetrahymena thermophila.

Fillingham JS, Chilcoat ND, Turkewitz AP, Orias E, Reith M, Pearlman RE.

J Eukaryot Microbiol. 2002 Mar-Apr;49(2):99-107.

PMID:
12043965
28.

Functional genomics: the coming of age for Tetrahymena thermophila.

Turkewitz AP, Orias E, Kapler G.

Trends Genet. 2002 Jan;18(1):35-40. Review.

PMID:
11750699
29.

Toward sequencing the Tetrahymena genome: exploiting the gift of nuclear dimorphism.

Orias E.

J Eukaryot Microbiol. 2000 Jul-Aug;47(4):328-33. Review.

PMID:
11140445
30.

Symposium on the genomics of free-living microbial eukaryotes--state of the art and promise: introductory remarks.

Orias E.

J Eukaryot Microbiol. 2000 Jul-Aug;47(4):327. Review. No abstract available.

PMID:
11140444
31.

Autonomously replicating macronuclear DNA pieces are the physical basis of genetic coassortment groups in Tetrahymena thermophila.

Wong L, Klionsky L, Wickert S, Merriam V, Orias E, Hamilton EP.

Genetics. 2000 Jul;155(3):1119-25.

32.
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34.

Genetically mapping new mutants and cloned genes.

Hamilton EP, Orias E.

Methods Cell Biol. 2000;62:265-80. Review. No abstract available.

PMID:
10503197
35.

Genetically sorting a collection of Tetrahymena mutants.

Orias E, Hamilton EP.

Methods Cell Biol. 2000;62:253-63. Review. No abstract available.

PMID:
10503196
36.

Genetic crosses: setting up crosses, testing progeny, and isolating phenotypic assortants.

Hamilton EP, Orias E.

Methods Cell Biol. 2000;62:219-28. Review. No abstract available.

PMID:
10503193
37.

Tetrahymena as a laboratory organism: useful strains, cell culture, and cell line maintenance.

Orias E, Hamilton EP, Orias JD.

Methods Cell Biol. 2000;62:189-211. Review. No abstract available.

PMID:
10503191
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47.

Mapping the mating type locus of Tetrahymena thermophila: meiotic linkage of mat to the ribosomal RNA gene.

Bleyman LK, Baum MP, Bruns PJ, Orias E.

Dev Genet. 1992;13(1):34-40.

PMID:
1395139
48.

Introduction: a tribute to David L Nanney, an experimental ciliatologist.

Allen SL, Orias E.

Dev Genet. 1992;13(1):1-8. No abstract available.

49.

PCR amplification of Tetrahymena rDNA segments starting with individual cells.

Orias E, Hashimoto N, Chau MF, Higashinakagawa T.

J Protozool. 1991 Jul-Aug;38(4):306-11.

PMID:
1787419
50.

Evolution of amitosis of the ciliate macronucleus: gain of the capacity to divide.

Orias E.

J Protozool. 1991 May-Jun;38(3):217-21. Review.

PMID:
1908902

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