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Items: 50

1.

Ecology of Subseafloor Crustal Biofilms.

Ramírez GA, Garber AI, Lecoeuvre A, D'Angelo T, Wheat CG, Orcutt BN.

Front Microbiol. 2019 Aug 28;10:1983. doi: 10.3389/fmicb.2019.01983. eCollection 2019.

2.

Corrigendum: Low Energy Subsurface Environments as Extraterrestrial Analogs.

Jones RM, Goordial JM, Orcutt BN.

Front Microbiol. 2019 Aug 27;10:1959. doi: 10.3389/fmicb.2019.01959. eCollection 2019.

3.

Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere.

Carr SA, Jungbluth SP, Eloe-Fadrosh EA, Stepanauskas R, Woyke T, Rappé MS, Orcutt BN.

ISME J. 2019 Jun;13(6):1457-1468. doi: 10.1038/s41396-019-0352-9. Epub 2019 Feb 7.

4.

Low Energy Subsurface Environments as Extraterrestrial Analogs.

Jones RM, Goordial JM, Orcutt BN.

Front Microbiol. 2018 Jul 18;9:1605. doi: 10.3389/fmicb.2018.01605. eCollection 2018. Review. Erratum in: Front Microbiol. 2019 Aug 27;10:1959.

5.

Sediment Microbial Communities Influenced by Cool Hydrothermal Fluid Migration.

Zinke LA, Reese BK, McManus J, Wheat CG, Orcutt BN, Amend JP.

Front Microbiol. 2018 Jun 13;9:1249. doi: 10.3389/fmicb.2018.01249. eCollection 2018.

6.

Influence of Igneous Basement on Deep Sediment Microbial Diversity on the Eastern Juan de Fuca Ridge Flank.

Labonté JM, Lever MA, Edwards KJ, Orcutt BN.

Front Microbiol. 2017 Aug 2;8:1434. doi: 10.3389/fmicb.2017.01434. eCollection 2017.

7.

Editorial: Recent Advances in Geomicrobiology of the Ocean Crust.

Orcutt BN, Sylvan JB, Santelli CM.

Front Microbiol. 2017 Jul 21;8:1368. doi: 10.3389/fmicb.2017.01368. eCollection 2017. No abstract available.

8.

Assessing Marine Microbial Induced Corrosion at Santa Catalina Island, California.

Ramírez GA, Hoffman CL, Lee MD, Lesniewski RA, Barco RA, Garber A, Toner BM, Wheat CG, Edwards KJ, Orcutt BN.

Front Microbiol. 2016 Oct 25;7:1679. eCollection 2016.

9.

Nitrogen Stimulates the Growth of Subsurface Basalt-associated Microorganisms at the Western Flank of the Mid-Atlantic Ridge.

Zhang X, Fang J, Bach W, Edwards KJ, Orcutt BN, Wang F.

Front Microbiol. 2016 May 3;7:633. doi: 10.3389/fmicb.2016.00633. eCollection 2016.

10.

Temperature and Redox Effect on Mineral Colonization in Juan de Fuca Ridge Flank Subsurface Crustal Fluids.

Baquiran JP, Ramírez GA, Haddad AG, Toner BM, Hulme S, Wheat CG, Edwards KJ, Orcutt BN.

Front Microbiol. 2016 Mar 31;7:396. doi: 10.3389/fmicb.2016.00396. eCollection 2016.

11.

Microbial Communities on Seafloor Basalts at Dorado Outcrop Reflect Level of Alteration and Highlight Global Lithic Clades.

Lee MD, Walworth NG, Sylvan JB, Edwards KJ, Orcutt BN.

Front Microbiol. 2015 Dec 23;6:1470. doi: 10.3389/fmicb.2015.01470. eCollection 2015.

12.

Carbon fixation by basalt-hosted microbial communities.

Orcutt BN, Sylvan JB, Rogers DR, Delaney J, Lee RW, Girguis PR.

Front Microbiol. 2015 Sep 7;6:904. doi: 10.3389/fmicb.2015.00904. eCollection 2015.

13.

Abundant Atribacteria in deep marine sediment from the Adélie Basin, Antarctica.

Carr SA, Orcutt BN, Mandernack KW, Spear JR.

Front Microbiol. 2015 Aug 26;6:872. doi: 10.3389/fmicb.2015.00872. eCollection 2015.

14.

New Insight into Microbial Iron Oxidation as Revealed by the Proteomic Profile of an Obligate Iron-Oxidizing Chemolithoautotroph.

Barco RA, Emerson D, Sylvan JB, Orcutt BN, Jacobson Meyers ME, Ramírez GA, Zhong JD, Edwards KJ.

Appl Environ Microbiol. 2015 Sep 1;81(17):5927-37. doi: 10.1128/AEM.01374-15. Epub 2015 Jun 19.

15.

Oxygen consumption rates in subseafloor basaltic crust derived from a reaction transport model.

Orcutt BN, Wheat CG, Rouxel O, Hulme S, Edwards KJ, Bach W.

Nat Commun. 2013;4:2539. doi: 10.1038/ncomms3539.

PMID:
24071791
16.

Microbial activity in the marine deep biosphere: progress and prospects.

Orcutt BN, Larowe DE, Biddle JF, Colwell FS, Glazer BT, Reese BK, Kirkpatrick JB, Lapham LL, Mills HJ, Sylvan JB, Wankel SD, Wheat CG.

Front Microbiol. 2013 Jul 11;4:189. doi: 10.3389/fmicb.2013.00189. eCollection 2013.

17.

Resource burden associated with contact precautions for methicillin-resistant Staphylococcus aureus and vancomycin-resistant Enterococcus: the patient access managers' perspective.

Shenoy ES, Walensky RP, Lee H, Orcutt B, Hooper DC.

Infect Control Hosp Epidemiol. 2012 Aug;33(8):849-52. doi: 10.1086/666629. Epub 2012 Jun 26.

18.

Microbial communities at the borehole observatory on the Costa Rica Rift flank (Ocean Drilling Program Hole 896A).

Nigro LM, Harris K, Orcutt BN, Hyde A, Clayton-Luce S, Becker K, Teske A.

Front Microbiol. 2012 Jun 29;3:232. doi: 10.3389/fmicb.2012.00232. eCollection 2012.

19.

Bacteriogenic Fe(III) (oxyhydr)oxides characterized by synchrotron microprobe coupled with spatially resolved phylogenetic analysis.

Mitsunobu S, Shiraishi F, Makita H, Orcutt BN, Kikuchi S, Jorgensen BB, Takahashi Y.

Environ Sci Technol. 2012 Mar 20;46(6):3304-11. doi: 10.1021/es203860m. Epub 2012 Mar 8.

PMID:
22360427
20.

Microbial ecology of the dark ocean above, at, and below the seafloor.

Orcutt BN, Sylvan JB, Knab NJ, Edwards KJ.

Microbiol Mol Biol Rev. 2011 Jun;75(2):361-422. doi: 10.1128/MMBR.00039-10. Review.

21.

Colonization of subsurface microbial observatories deployed in young ocean crust.

Orcutt BN, Bach W, Becker K, Fisher AT, Hentscher M, Toner BM, Wheat CG, Edwards KJ.

ISME J. 2011 Apr;5(4):692-703. doi: 10.1038/ismej.2010.157. Epub 2010 Nov 25.

22.

An interlaboratory comparison of 16S rRNA gene-based terminal restriction fragment length polymorphism and sequencing methods for assessing microbial diversity of seafloor basalts.

Orcutt B, Bailey B, Staudigel H, Tebo BM, Edwards KJ.

Environ Microbiol. 2009 Jul;11(7):1728-35. doi: 10.1111/j.1462-2920.2009.01899.x. Epub 2009 Mar 11.

23.

Abundance and diversity of microbial life in ocean crust.

Santelli CM, Orcutt BN, Banning E, Bach W, Moyer CL, Sogin ML, Staudigel H, Edwards KJ.

Nature. 2008 May 29;453(7195):653-6. doi: 10.1038/nature06899.

PMID:
18509444
24.

On the relationship between methane production and oxidation by anaerobic methanotrophic communities from cold seeps of the Gulf of Mexico.

Orcutt B, Samarkin V, Boetius A, Joye S.

Environ Microbiol. 2008 May;10(5):1108-17. doi: 10.1111/j.1462-2920.2007.01526.x. Epub 2008 Jan 23.

PMID:
18218032
25.

Ecological genomics of marine Roseobacters.

Moran MA, Belas R, Schell MA, González JM, Sun F, Sun S, Binder BJ, Edmonds J, Ye W, Orcutt B, Howard EC, Meile C, Palefsky W, Goesmann A, Ren Q, Paulsen I, Ulrich LE, Thompson LS, Saunders E, Buchan A.

Appl Environ Microbiol. 2007 Jul;73(14):4559-69. Epub 2007 May 25.

26.

Asphalt volcanism and chemosynthetic life in the Campeche Knolls, Gulf of Mexico.

MacDonald IR, Bohrmann G, Escobar E, Abegg F, Blanchon P, Blinova V, Brückmann W, Drews M, Eisenhauer A, Han X, Heeschen K, Meier F, Mortera C, Naehr T, Orcutt B, Bernard B, Brooks J, de Faragó M.

Science. 2004 May 14;304(5673):999-1002.

27.

The Protein Information Resource: an integrated public resource of functional annotation of proteins.

Wu CH, Huang H, Arminski L, Castro-Alvear J, Chen Y, Hu ZZ, Ledley RS, Lewis KC, Mewes HW, Orcutt BC, Suzek BE, Tsugita A, Vinayaka CR, Yeh LS, Zhang J, Barker WC.

Nucleic Acids Res. 2002 Jan 1;30(1):35-7.

28.

PIR: a new resource for bioinformatics.

McGarvey PB, Huang H, Barker WC, Orcutt BC, Garavelli JS, Srinivasarao GY, Yeh LS, Xiao C, Wu CH.

Bioinformatics. 2000 Mar;16(3):290-1.

PMID:
10869023
29.

Protein Information Resource: a community resource for expert annotation of protein data.

Barker WC, Garavelli JS, Hou Z, Huang H, Ledley RS, McGarvey PB, Mewes HW, Orcutt BC, Pfeiffer F, Tsugita A, Vinayaka CR, Xiao C, Yeh LS, Wu C.

Nucleic Acids Res. 2001 Jan 1;29(1):29-32.

30.

The protein information resource (PIR).

Barker WC, Garavelli JS, Huang H, McGarvey PB, Orcutt BC, Srinivasarao GY, Xiao C, Yeh LS, Ledley RS, Janda JF, Pfeiffer F, Mewes HW, Tsugita A, Wu C.

Nucleic Acids Res. 2000 Jan 1;28(1):41-4.

31.

PIR-ALN: a database of protein sequence alignments.

Srinivasarao GY, Yeh LS, Marzec CR, Orcutt BC, Barker WC.

Bioinformatics. 1999 May;15(5):382-90.

PMID:
10366659
32.

Database of protein sequence alignments: PIR-ALN.

Srinivasarao GY, Yeh LS, Marzec CR, Orcutt BC, Barker WC, Pfeiffer F.

Nucleic Acids Res. 1999 Jan 1;27(1):284-5.

33.

The PIR-International Protein Sequence Database.

Barker WC, Garavelli JS, McGarvey PB, Marzec CR, Orcutt BC, Srinivasarao GY, Yeh LS, Ledley RS, Mewes HW, Pfeiffer F, Tsugita A, Wu C.

Nucleic Acids Res. 1999 Jan 1;27(1):39-43.

34.

The PIR-International Protein Sequence Database.

Barker WC, Garavelli JS, Haft DH, Hunt LT, Marzec CR, Orcutt BC, Srinivasarao GY, Yeh LS, Ledley RS, Mewes HW, Pfeiffer F, Tsugita A.

Nucleic Acids Res. 1998 Jan 1;26(1):27-32.

35.

The Protein Information Resource (PIR) and the PIR-International Protein Sequence Database.

George DG, Dodson RJ, Garavelli JS, Haft DH, Hunt LT, Marzec CR, Orcutt BC, Sidman KE, Srinivasarao GY, Yeh LS, Arminski LM, Ledley RS, Tsugita A, Barker WC.

Nucleic Acids Res. 1997 Jan 1;25(1):24-8.

36.

Searching the protein sequence database.

Orcutt BC, Barker WC.

Bull Math Biol. 1984;46(4):545-52. No abstract available.

PMID:
6509231
37.

Nucleic Acid Sequence Database V: completely sequenced genomes.

Chen HR, Dayhoff MO, Barker WC, Hunt LT, Yeh LS, George DG, Orcutt BC.

DNA. 1983;2(4):275-80. No abstract available.

PMID:
6420132
38.

Protein and Nucleic Acid Sequence Database Systems.

Orcutt BC, George DG, Dayhoff MO.

Annu Rev Biophys Bioeng. 1983;12:419-41. Review. No abstract available.

PMID:
6347043
39.

Nucleic acid sequence database computer system.

Orcutt BC, George DG, Fredrickson JA, Dayhoff MO.

Nucleic Acids Res. 1982 Jan 11;10(1):157-74. No abstract available.

40.

Nucleic acid sequence database IV.

Chen HR, Dayhoff MO, Barker WC, Hunt LT, Yeh LS, George DG, Orcutt BC.

DNA. 1982;1(4):365-74. No abstract available.

PMID:
7169012
41.

Nucleic acid sequence database III.

Chen HR, Dayhoff MO, Barker WC, Hunt LT, Yeh LS, George DG, Orcutt BC.

DNA. 1982;1(3):273. No abstract available.

PMID:
7169011
42.

Sequence bank update. Nucleic acid sequence database II.

Chen HR, Dayhoff MO, Barker WC, Hunt LT, Yeh LS, George DG, Orcutt BC.

DNA. 1982;1(2):103-8. No abstract available.

PMID:
7166095
43.

Data bank.

Dayhoff MO, Schwartz RM, Chen HR, Hunt LT, Barker WC, Orcutt BC.

Nature. 1981 Mar 5;290(5801):8. No abstract available.

PMID:
6163085
44.

Nucleic acid sequence database.

Dayhoff MO, Schwartz RM, Chen HR, Barker WC, Hunt LT, Orcutt BC.

DNA. 1981;1(1):51-8. No abstract available.

PMID:
7349842
45.

Nucleic acid sequence bank.

Dayhoff MO, Schwartz RM, Chen HR, Hunt LT, Barker WC, Orcutt BC.

Science. 1980 Sep 12;209(4462):1182.

PMID:
7403878
46.

Methods for identifying proteins by using partial sequences.

Dayhoff MO, Orcutt BC.

Proc Natl Acad Sci U S A. 1979 May;76(5):2170-4.

47.

Comparison of histologic and functional recovery after peripheral nerve repair.

Jabaley ME, Burns JE, Orcutt BS, Bryant M.

J Hand Surg Am. 1976 Sep;1(2):119-30.

PMID:
1018079
48.

Flexibility of an active center in sodium-plus-potassium adenosine triphosphatase.

Post RL, Kume S, Tobin T, Orcutt B, Sen AK.

J Gen Physiol. 1969 Jul 1;54(1):306-26.

49.

Modifying effect of linoleic acid on articular aging and osteoarthrosis in lard-fed mice.

Silberberg M, Silberberg R, Orcutt B.

Gerontologia. 1965;11(3):179-87. No abstract available.

PMID:
5865221
50.

ANCHORING EFFECTS IN SEQUENTIAL CLINICAL JUDGMENTS.

BIERI J, ORCUTT BA, LEAMAN R.

J Abnorm Psychol. 1963 Dec;67:616-23. No abstract available.

PMID:
14084771

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