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Items: 14

1.

Variation and selection on codon usage bias across an entire subphylum.

Labella AL, Opulente DA, Steenwyk JL, Hittinger CT, Rokas A.

PLoS Genet. 2019 Jul 31;15(7):e1008304. doi: 10.1371/journal.pgen.1008304. [Epub ahead of print]

2.

Multiple Reinventions of Mating-type Switching during Budding Yeast Evolution.

Krassowski T, Kominek J, Shen XX, Opulente DA, Zhou X, Rokas A, Hittinger CT, Wolfe KH.

Curr Biol. 2019 Aug 5;29(15):2555-2562.e8. doi: 10.1016/j.cub.2019.06.056. Epub 2019 Jul 25.

3.

Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts.

Steenwyk JL, Opulente DA, Kominek J, Shen XX, Zhou X, Labella AL, Bradley NP, Eichman BF, Čadež N, Libkind D, DeVirgilio J, Hulfachor AB, Kurtzman CP, Hittinger CT, Rokas A.

PLoS Biol. 2019 May 21;17(5):e3000255. doi: 10.1371/journal.pbio.3000255. eCollection 2019 May.

4.

Pathogenic budding yeasts isolated outside of clinical settings.

Opulente DA, Langdon QK, Buh KV, Haase MAB, Sylvester K, Moriarty RV, Jarzyna M, Considine SL, Schneider RM, Hittinger CT.

FEMS Yeast Res. 2019 May 1;19(3). pii: foz032. doi: 10.1093/femsyr/foz032.

PMID:
31076749
5.

Eukaryotic Acquisition of a Bacterial Operon.

Kominek J, Doering DT, Opulente DA, Shen XX, Zhou X, DeVirgilio J, Hulfachor AB, Groenewald M, Mcgee MA, Karlen SD, Kurtzman CP, Rokas A, Hittinger CT.

Cell. 2019 Mar 7;176(6):1356-1366.e10. doi: 10.1016/j.cell.2019.01.034. Epub 2019 Feb 21.

PMID:
30799038
6.

Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum.

Shen XX, Opulente DA, Kominek J, Zhou X, Steenwyk JL, Buh KV, Haase MAB, Wisecaver JH, Wang M, Doering DT, Boudouris JT, Schneider RM, Langdon QK, Ohkuma M, Endoh R, Takashima M, Manabe RI, Čadež N, Libkind D, Rosa CA, DeVirgilio J, Hulfachor AB, Groenewald M, Kurtzman CP, Hittinger CT, Rokas A.

Cell. 2018 Nov 29;175(6):1533-1545.e20. doi: 10.1016/j.cell.2018.10.023. Epub 2018 Nov 8.

PMID:
30415838
7.

Functional and evolutionary characterization of a secondary metabolite gene cluster in budding yeasts.

Krause DJ, Kominek J, Opulente DA, Shen XX, Zhou X, Langdon QK, DeVirgilio J, Hulfachor AB, Kurtzman CP, Rokas A, Hittinger CT.

Proc Natl Acad Sci U S A. 2018 Oct 23;115(43):11030-11035. doi: 10.1073/pnas.1806268115. Epub 2018 Oct 8.

8.

Evolutionary instability of CUG-Leu in the genetic code of budding yeasts.

Krassowski T, Coughlan AY, Shen XX, Zhou X, Kominek J, Opulente DA, Riley R, Grigoriev IV, Maheshwari N, Shields DC, Kurtzman CP, Hittinger CT, Rokas A, Wolfe KH.

Nat Commun. 2018 May 14;9(1):1887. doi: 10.1038/s41467-018-04374-7.

9.

Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage.

Gonçalves C, Wisecaver JH, Kominek J, Oom MS, Leandro MJ, Shen XX, Opulente DA, Zhou X, Peris D, Kurtzman CP, Hittinger CT, Rokas A, Gonçalves P.

Elife. 2018 Apr 12;7. pii: e33034. doi: 10.7554/eLife.33034.

10.

Factors driving metabolic diversity in the budding yeast subphylum.

Opulente DA, Rollinson EJ, Bernick-Roehr C, Hulfachor AB, Rokas A, Kurtzman CP, Hittinger CT.

BMC Biol. 2018 Mar 2;16(1):26. doi: 10.1186/s12915-018-0498-3.

11.

A Molecular Portrait of De Novo Genes in Yeasts.

Vakirlis N, Hebert AS, Opulente DA, Achaz G, Hittinger CT, Fischer G, Coon JJ, Lafontaine I.

Mol Biol Evol. 2018 Mar 1;35(3):631-645. doi: 10.1093/molbev/msx315.

12.

Efficient engineering of marker-free synthetic allotetraploids of Saccharomyces.

Alexander WG, Peris D, Pfannenstiel BT, Opulente DA, Kuang M, Hittinger CT.

Fungal Genet Biol. 2016 Apr;89:10-17. doi: 10.1016/j.fgb.2015.11.002. Epub 2015 Nov 7.

13.

Coevolution trumps pleiotropy: carbon assimilation traits are independent of metabolic network structure in budding yeast.

Opulente DA, Morales CM, Carey LB, Rest JS.

PLoS One. 2013;8(1):e54403. doi: 10.1371/journal.pone.0054403. Epub 2013 Jan 10.

14.

Nonlinear fitness consequences of variation in expression level of a eukaryotic gene.

Rest JS, Morales CM, Waldron JB, Opulente DA, Fisher J, Moon S, Bullaughey K, Carey LB, Dedousis D.

Mol Biol Evol. 2013 Feb;30(2):448-56. doi: 10.1093/molbev/mss248. Epub 2012 Oct 27.

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