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Items: 1 to 50 of 65

1.

Evolution of nodal and nodal-related genes and the putative composition of the heterodimers that trigger the nodal pathway in vertebrates.

Opazo JC, Kuraku S, Zavala K, Toloza-Villalobos J, Hoffmann FG.

Evol Dev. 2019 Jul;21(4):205-217. doi: 10.1111/ede.12292. Epub 2019 Jun 17.

PMID:
31210006
2.

The Reprimo gene family member, reprimo-like (rprml), is required for blood development in embryonic zebrafish.

Stanic K, Reig G, Wichmann IA, Opazo JC, Owen GI, Corvalán AH, Concha ML, Amigo JD.

Sci Rep. 2019 May 9;9(1):7131. doi: 10.1038/s41598-019-43436-8.

3.

Phylogenetic evidence for independent origins of GDF1 and GDF3 genes in anurans and mammals.

Opazo JC, Zavala K.

Sci Rep. 2018 Sep 11;8(1):13595. doi: 10.1038/s41598-018-31954-w.

4.

The Reprimo Gene Family: A Novel Gene Lineage in Gastric Cancer with Tumor Suppressive Properties.

Amigo JD, Opazo JC, Jorquera R, Wichmann IA, Garcia-Bloj BA, Alarcon MA, Owen GI, Corvalán AH.

Int J Mol Sci. 2018 Jun 25;19(7). pii: E1862. doi: 10.3390/ijms19071862. Review.

5.

An association between differential expression and genetic divergence in the Patagonian olive mouse (Abrothrix olivacea).

Giorello FM, Feijoo M, D'Elía G, Naya DE, Valdez L, Opazo JC, Lessa EP.

Mol Ecol. 2018 Jun 25. doi: 10.1111/mec.14778. [Epub ahead of print]

PMID:
29940092
6.

Evolution of dopamine receptors: phylogenetic evidence suggests a later origin of the DRD2l and DRD4rs dopamine receptor gene lineages.

Opazo JC, Zavala K, Miranda-Rottmann S, Araya R.

PeerJ. 2018 Apr 13;6:e4593. doi: 10.7717/peerj.4593. eCollection 2018.

7.

Expression of RPRM/rprm in the Olfactory System of Embryonic Zebrafish (Danio rerio).

Stanic K, Quiroz A, Lemus CG, Wichmann IA, Corvalán AH, Owen GI, Opazo JC, Concha ML, Amigo JD.

Front Neuroanat. 2018 Mar 27;12:23. doi: 10.3389/fnana.2018.00023. eCollection 2018.

8.

Gene Turnover and Diversification of the α- and β-Globin Gene Families in Sauropsid Vertebrates.

Hoffmann FG, Vandewege MW, Storz JF, Opazo JC.

Genome Biol Evol. 2018 Jan 1;10(1):344-358. doi: 10.1093/gbe/evy001.

9.

Progressive erosion of the Relaxin1 gene in bovids.

Malone L, Opazo JC, Ryan PL, Hoffmann FG.

Gen Comp Endocrinol. 2017 Oct 1;252:12-17. doi: 10.1016/j.ygcen.2017.07.011. Epub 2017 Jul 19.

PMID:
28733228
10.

Evolution of the α2-adrenoreceptors in vertebrates: ADRA2D is absent in mammals and crocodiles.

Céspedes HA, Zavala K, Vandewege MW, Opazo JC.

Gen Comp Endocrinol. 2017 Sep 1;250:85-94. doi: 10.1016/j.ygcen.2017.06.006. Epub 2017 Jun 13.

PMID:
28622977
11.

Reprimo tissue-specific expression pattern is conserved between zebrafish and human.

Figueroa RJ, Carrasco-Avino G, Wichmann IA, Lange M, Owen GI, Siekmann AF, Corvalán AH, Opazo JC, Amigo JD.

PLoS One. 2017 May 31;12(5):e0178274. doi: 10.1371/journal.pone.0178274. eCollection 2017.

12.

Evolution of gremlin 2 in cetartiodactyl mammals: gene loss coincides with lack of upper jaw incisors in ruminants.

Opazo JC, Zavala K, Krall P, Arias RA.

PeerJ. 2017 Jan 26;5:e2901. doi: 10.7717/peerj.2901. eCollection 2017.

13.

Evolution of the β-adrenoreceptors in vertebrates.

Zavala K, Vandewege MW, Hoffmann FG, Opazo JC.

Gen Comp Endocrinol. 2017 Jan 1;240:129-137. doi: 10.1016/j.ygcen.2016.10.005. Epub 2016 Oct 18.

PMID:
27769631
14.

Evolutionary history of the reprimo tumor suppressor gene family in vertebrates with a description of a new reprimo gene lineage.

Wichmann IA, Zavala K, Hoffmann FG, Vandewege MW, Corvalán AH, Amigo JD, Owen GI, Opazo JC.

Gene. 2016 Oct 10;591(1):245-254. doi: 10.1016/j.gene.2016.07.036. Epub 2016 Jul 16.

PMID:
27432065
15.

Lineage-Specific Expansion of the Chalcone Synthase Gene Family in Rosids.

Zavala K, Opazo JC.

PLoS One. 2015 Jul 16;10(7):e0133400. doi: 10.1371/journal.pone.0133400. eCollection 2015.

16.

Characterization of the kidney transcriptome of the long-haired mouse Abrothrix hirta (Rodentia, Sigmodontinae) and comparison with that of the olive mouse A. olivacea.

Valdez L, Giorello F, Feijoo M, Opazo JC, Lessa EP, Naya DE, D'Elía G.

PLoS One. 2015 Apr 10;10(4):e0121148. doi: 10.1371/journal.pone.0121148. eCollection 2015.

17.

Ancient Duplications and Expression Divergence in the Globin Gene Superfamily of Vertebrates: Insights from the Elephant Shark Genome and Transcriptome.

Opazo JC, Lee AP, Hoffmann FG, Toloza-Villalobos J, Burmester T, Venkatesh B, Storz JF.

Mol Biol Evol. 2015 Jul;32(7):1684-94. doi: 10.1093/molbev/msv054. Epub 2015 Mar 4.

18.

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.

Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Gutiérrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, Caballero J, Hubley RM, Smit AF, Platt RN, Lavoie CA, Ramakodi MP, Finger JW Jr, Suh A, Isberg SR, Miles L, Chong AY, Jaratlerdsiri W, Gongora J, Moran C, Iriarte A, McCormack J, Burgess SC, Edwards SV, Lyons E, Williams C, Breen M, Howard JT, Gresham CR, Peterson DG, Schmitz J, Pollock DD, Haussler D, Triplett EW, Zhang G, Irie N, Jarvis ED, Brochu CA, Schmidt CJ, McCarthy FM, Faircloth BC, Hoffmann FG, Glenn TC, Gabaldón T, Paten B, Ray DA.

Science. 2014 Dec 12;346(6215):1254449. doi: 10.1126/science.1254449. Epub 2014 Dec 11.

19.

Comparative genomics reveals insights into avian genome evolution and adaptation.

Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, Wang Z, Jin L, Zhang P, Hu H, Yang W, Hu J, Xiao J, Yang Z, Liu Y, Xie Q, Yu H, Lian J, Wen P, Zhang F, Li H, Zeng Y, Xiong Z, Liu S, Zhou L, Huang Z, An N, Wang J, Zheng Q, Xiong Y, Wang G, Wang B, Wang J, Fan Y, da Fonseca RR, Alfaro-Núñez A, Schubert M, Orlando L, Mourier T, Howard JT, Ganapathy G, Pfenning A, Whitney O, Rivas MV, Hara E, Smith J, Farré M, Narayan J, Slavov G, Romanov MN, Borges R, Machado JP, Khan I, Springer MS, Gatesy J, Hoffmann FG, Opazo JC, Håstad O, Sawyer RH, Kim H, Kim KW, Kim HJ, Cho S, Li N, Huang Y, Bruford MW, Zhan X, Dixon A, Bertelsen MF, Derryberry E, Warren W, Wilson RK, Li S, Ray DA, Green RE, O'Brien SJ, Griffin D, Johnson WE, Haussler D, Ryder OA, Willerslev E, Graves GR, Alström P, Fjeldså J, Mindell DP, Edwards SV, Braun EL, Rahbek C, Burt DW, Houde P, Zhang Y, Yang H, Wang J; Avian Genome Consortium, Jarvis ED, Gilbert MT, Wang J.

Science. 2014 Dec 12;346(6215):1311-20. doi: 10.1126/science.1251385. Epub 2014 Dec 11.

20.

Gene turnover in the avian globin gene families and evolutionary changes in hemoglobin isoform expression.

Opazo JC, Hoffmann FG, Natarajan C, Witt CC, Berenbrink M, Storz JF.

Mol Biol Evol. 2015 Apr;32(4):871-87. doi: 10.1093/molbev/msu341. Epub 2014 Dec 9.

21.

The circadian clock of teleost fish: a comparative analysis reveals distinct fates for duplicated genes.

Toloza-Villalobos J, Arroyo JI, Opazo JC.

J Mol Evol. 2015 Jan;80(1):57-64. doi: 10.1007/s00239-014-9660-x. Epub 2014 Dec 9.

PMID:
25487517
22.

Increased rate of hair keratin gene loss in the cetacean lineage.

Nery MF, Arroyo JI, Opazo JC.

BMC Genomics. 2014 Oct 6;15:869. doi: 10.1186/1471-2164-15-869.

23.

Characterization of the kidney transcriptome of the South American olive mouse Abrothrix olivacea.

Giorello FM, Feijoo M, D'Elía G, Valdez L, Opazo JC, Varas V, Naya DE, Lessa EP.

BMC Genomics. 2014 Jun 8;15:446. doi: 10.1186/1471-2164-15-446.

24.

Evolution of the relaxin/insulin-like gene family in anthropoid primates.

Arroyo JI, Hoffmann FG, Opazo JC.

Genome Biol Evol. 2014 Mar;6(3):491-9. doi: 10.1093/gbe/evu023.

25.
26.

[Combined norms for the prevention of vertical transmission of HIV and syphillis infection].

Programa Nacional de Prevención y Control de la infección por VIH/SIDA; ITS División de Prevención y Control de Enfermedades Subsecretaría de Salud Pública Ministerio de Salud, Toriello PV, Menichetti CP, Buendía CB, Hupat EW, Larrañaga CL, Riquelme JM, Saldías CS, Guzmán CB, Schilcrot FF, Lizama AS, Cabello ES, Pérez SB, Díaz RB, Jiménez AR, Polanco AC, Valenzuela SS, Letelier MI, Illanes CG, López GP, Muñoz SV, Tagle MA, Cruciani RC, Molina LU, Opazo JC, Aillapán MV, Venegas AM, Marín MR, Galindo BG, Ramírez PR, Burton KC, Ochoa MG, Opazo MG, Pizarro JN, Camus FA, Nannig PM, Vargas AP, Peña JD, Campbell GB, Couratier CP.

Rev Chilena Infectol. 2013 Jun;30(3):259-302. doi: 10.4067/S0716-10182013000300004. Spanish. No abstract available.

27.

Accelerated evolutionary rate of the myoglobin gene in long-diving whales.

Nery MF, Arroyo JI, Opazo JC.

J Mol Evol. 2013 Jun;76(6):380-7. doi: 10.1007/s00239-013-9572-1. Epub 2013 Jul 16.

PMID:
23857304
28.

How to Make a Dolphin: Molecular Signature of Positive Selection in Cetacean Genome.

Nery MF, González DJ, Opazo JC.

PLoS One. 2013 Jun 19;8(6):e65491. doi: 10.1371/journal.pone.0065491. Print 2013.

29.
30.

INSL4 pseudogenes help define the relaxin family repertoire in the common ancestor of placental mammals.

Arroyo JI, Hoffmann FG, Good S, Opazo JC.

J Mol Evol. 2012 Aug;75(1-2):73-8. doi: 10.1007/s00239-012-9517-0. Epub 2012 Sep 9.

PMID:
22961112
31.

Whole-genome duplication and the functional diversification of teleost fish hemoglobins.

Opazo JC, Butts GT, Nery MF, Storz JF, Hoffmann FG.

Mol Biol Evol. 2013 Jan;30(1):140-53. doi: 10.1093/molbev/mss212. Epub 2012 Sep 4.

32.

Gene duplication, genome duplication, and the functional diversification of vertebrate globins.

Storz JF, Opazo JC, Hoffmann FG.

Mol Phylogenet Evol. 2013 Feb;66(2):469-78. doi: 10.1016/j.ympev.2012.07.013. Epub 2012 Jul 27. Review.

33.

Resolution of the laurasiatherian phylogeny: evidence from genomic data.

Nery MF, González DJ, Hoffmann FG, Opazo JC.

Mol Phylogenet Evol. 2012 Sep;64(3):685-9. doi: 10.1016/j.ympev.2012.04.012. Epub 2012 Apr 24.

PMID:
22560954
34.

Gene turnover and differential retention in the relaxin/insulin-like gene family in primates.

Arroyo JI, Hoffmann FG, Opazo JC.

Mol Phylogenet Evol. 2012 Jun;63(3):768-76. doi: 10.1016/j.ympev.2012.02.011. Epub 2012 Mar 1.

PMID:
22405815
35.

Gene duplication and positive selection explains unusual physiological roles of the relaxin gene in the European rabbit.

Arroyo JI, Hoffmann FG, Opazo JC.

J Mol Evol. 2012 Feb;74(1-2):52-60. doi: 10.1007/s00239-012-9487-2. Epub 2012 Feb 22.

PMID:
22354201
36.

Evolution of the globin gene family in deuterostomes: lineage-specific patterns of diversification and attrition.

Hoffmann FG, Opazo JC, Hoogewijs D, Hankeln T, Ebner B, Vinogradov SN, Bailly X, Storz JF.

Mol Biol Evol. 2012 Jul;29(7):1735-45. doi: 10.1093/molbev/mss018. Epub 2012 Jan 24.

37.

Silencing, positive selection and parallel evolution: busy history of primate cytochromes C.

Pierron D, Opazo JC, Heiske M, Papper Z, Uddin M, Chand G, Wildman DE, Romero R, Goodman M, Grossman LI.

PLoS One. 2011;6(10):e26269. doi: 10.1371/journal.pone.0026269. Epub 2011 Oct 18.

38.

Whole-genome duplications spurred the functional diversification of the globin gene superfamily in vertebrates.

Hoffmann FG, Opazo JC, Storz JF.

Mol Biol Evol. 2012 Jan;29(1):303-12. doi: 10.1093/molbev/msr207. Epub 2011 Sep 30.

39.

Differential loss and retention of cytoglobin, myoglobin, and globin-E during the radiation of vertebrates.

Hoffmann FG, Opazo JC, Storz JF.

Genome Biol Evol. 2011;3:588-600. doi: 10.1093/gbe/evr055. Epub 2011 Jun 21.

40.

Using new tools to solve an old problem: the evolution of endothermy in vertebrates.

Nespolo RF, Bacigalupe LD, Figueroa CC, Koteja P, Opazo JC.

Trends Ecol Evol. 2011 Aug;26(8):414-23. doi: 10.1016/j.tree.2011.04.004. Epub 2011 May 14. Review.

PMID:
21571391
41.

Phylogenetic diversification of the globin gene superfamily in chordates.

Storz JF, Opazo JC, Hoffmann FG.

IUBMB Life. 2011 May;63(5):313-22. doi: 10.1002/iub.482. Epub 2011 May 9. Review.

42.

Developmental regulation of hemoglobin synthesis in the green anole lizard Anolis carolinensis.

Storz JF, Hoffmann FG, Opazo JC, Sanger TJ, Moriyama H.

J Exp Biol. 2011 Feb 15;214(Pt 4):575-81. doi: 10.1242/jeb.050443.

43.

Evolution of the relaxin/insulin-like gene family in placental mammals: implications for its early evolution.

Hoffmann FG, Opazo JC.

J Mol Evol. 2011 Jan;72(1):72-9. doi: 10.1007/s00239-010-9403-6. Epub 2010 Nov 17.

PMID:
21082170
44.

Gene cooption and convergent evolution of oxygen transport hemoglobins in jawed and jawless vertebrates.

Hoffmann FG, Opazo JC, Storz JF.

Proc Natl Acad Sci U S A. 2010 Aug 10;107(32):14274-9. doi: 10.1073/pnas.1006756107. Epub 2010 Jul 26.

45.

Lineage-specific patterns of functional diversification in the alpha- and beta-globin gene families of tetrapod vertebrates.

Hoffmann FG, Storz JF, Gorr TA, Opazo JC.

Mol Biol Evol. 2010 May;27(5):1126-38. doi: 10.1093/molbev/msp325. Epub 2010 Jan 4.

46.

A fully resolved genus level phylogeny of neotropical primates (Platyrrhini).

Wildman DE, Jameson NM, Opazo JC, Yi SV.

Mol Phylogenet Evol. 2009 Dec;53(3):694-702. doi: 10.1016/j.ympev.2009.07.019. Epub 2009 Jul 24.

PMID:
19632342
47.

Origin and ascendancy of a chimeric fusion gene: the beta/delta-globin gene of paenungulate mammals.

Opazo JC, Sloan AM, Campbell KL, Storz JF.

Mol Biol Evol. 2009 Jul;26(7):1469-78. doi: 10.1093/molbev/msp064. Epub 2009 Mar 30.

48.

Molecular evolution of cytochrome b in high- and low-altitude deer mice (genus Peromyscus).

Gering EJ, Opazo JC, Storz JF.

Heredity (Edinb). 2009 Mar;102(3):226-35. doi: 10.1038/hdy.2008.124. Epub 2008 Dec 24.

49.

New genes originated via multiple recombinational pathways in the beta-globin gene family of rodents.

Hoffmann FG, Opazo JC, Storz JF.

Mol Biol Evol. 2008 Dec;25(12):2589-600. doi: 10.1093/molbev/msn200. Epub 2008 Sep 9.

50.

Differential loss of embryonic globin genes during the radiation of placental mammals.

Opazo JC, Hoffmann FG, Storz JF.

Proc Natl Acad Sci U S A. 2008 Sep 2;105(35):12950-5. doi: 10.1073/pnas.0804392105. Epub 2008 Aug 28.

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